Pregenerated sensors for HOXB7 (Homo sapiens)
Ensembl gene IDs: ENSG00000260027Ensembl transcript IDs: ENST00000239165.9
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AAGCAAGAAGCAGCAGCCAGGCGCTTGGGGAACACGCGAGTGGTAGGTTTTGGGTTCAGTTCCCAGAGCTaGGCTTCTCTTCCTCTCCCT | + |
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Preference number: 2 (lower is better) Translates to: KQEAAARRLGNTRVVGFGFSSQS*ASLPLP Trigger: AGGGAGAGGAAGAGAAGCCCAGCTCTGGGAACTGAA...CCCAAAACCTACCACTCGCGTGTTCCCCAAGCGCCTGGCTGCTGCTTCTTGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| 3UTR-3UTR CAA 90 bp | GTCCACAAAGACAGCATTAAAGAGGGCTTACAAAACTGCAAGATTTTACAAAGAACTTCCCTATTCGATTaGAGTTTCCTGATTCAGTTC | + |
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Preference number: 3 (lower is better) Translates to: VHKDSIKEGLQNCKILQRTSLFD*SFLIQF Trigger: GAACTGAATCAGGAAACTCAAATCGAATAGGGAAGT...TCTTTGTAAAATCTTGCAGTTTTGTAAGCCCTCTTTAATGCTGTCTTTGTGGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CCA 90 bp | TTGGGGCTCCCTAAGGCCCCTTGGTGCCGCTGCTGGGAAGGCGGAGGCTCAGGACCCTGTCTTGGCCGGTaGTCCCCGGGCCCGCGGTCT | + |
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Preference number: 4 (lower is better) Translates to: LGLPKAPWCRCWEGGGSGPCLGR*SPGPRS Trigger: AGACCGCGGGCCCGGGGACCACCGGCCAAGACAGGG...TCCTGAGCCTCCGCCTTCCCAGCAGCGGCACCAAGGGGCCTTAGGGAGCCCCAA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR GCA 90 bp | TTGGGGCTCCCTAAGGCCCCTTGGTGCCGCTGCTGGGAAGGCGGAGGCTCAGGAGCCCCTTGGTGCCGCTaGTGGGAAGGCGGAGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: LGLPKAPWCRCWEGGGSGAPWCR*WEGGGS Trigger: TGAGCCTCCGCCTTCCCAGCAGCGGCACCAAGGGGC...TCCTGAGCCTCCGCCTTCCCAGCAGCGGCACCAAGGGGCCTTAGGGAGCCCCAA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CCA 90 bp | TTGGGGCTCCCTAAGGCCCCTTGGTGCCGCTGCTGGGAAGGCGGAGGCTCAGGACCTTGGTGCCGCTGCTaGGAAGGCGGAGGCTCAGGA | + |
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Preference number: 4 (lower is better) Translates to: LGLPKAPWCRCWEGGGSGPWCRC*EGGGSG Trigger: TCCTGAGCCTCCGCCTTCCCAGCAGCGGCACCAAGG...TCCTGAGCCTCCGCCTTCCCAGCAGCGGCACCAAGGGGCCTTAGGGAGCCCCAA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR TCA 90 bp | TTGGGGCTCCCTAAGGCCCCTTGGTGCCGCTGCTGGGAAGGCGGAGGCTCAGGAGCGCGCAGTGCATGTTaGAGGAACTCGGCTCGAGCC | + |
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Preference number: 4 (lower is better) Translates to: LGLPKAPWCRCWEGGGSGARSAC*RNSARA Trigger: GGCTCGAGCCGAGTTCCTTCAACATGCACTGCGCGC...TCCTGAGCCTCCGCCTTCCCAGCAGCGGCACCAAGGGGCCTTAGGGAGCCCCAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CCA 90 bp | AAGCAAGAAGCAGCAGCCAGGCGCTTGGGGAACACGCGAGTGGTAGGTTTTGGGGCTTCAGCCCTGTCTTaGCCGGTGGTCCCCGGGCCC | + |
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Preference number: 4 (lower is better) Translates to: KQEAAARRLGNTRVVGFGASALS*PVVPGP Trigger: GGGCCCGGGGACCACCGGCCAAGACAGGGCTGAAGC...CCCAAAACCTACCACTCGCGTGTTCCCCAAGCGCCTGGCTGCTGCTTCTTGCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CCA 90 bp | TTGGGGCTCCCTAAGGCCCCTTGGTGCCGCTGCTGGGAAGGCGGAGGCTCAGGAGCGAGTGGTAGGTTTTaGGGCTCCCTAAGGCCCCTT | + |
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Preference number: 4 (lower is better) Translates to: LGLPKAPWCRCWEGGGSGASGRF*GSLRPL Trigger: AAGGGGCCTTAGGGAGCCCCAAAACCTACCACTCGC...TCCTGAGCCTCCGCCTTCCCAGCAGCGGCACCAAGGGGCCTTAGGGAGCCCCAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR GCA 90 bp | AAGCAAGAAGCAGCAGCCAGGCGCTTGGGGAACACGCGAGTGGTAGGTTTTGGGCCTAAGGCCCCTTGGTaGCGCTGCTGGGAAGGCGGA | + |
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Preference number: 4 (lower is better) Translates to: KQEAAARRLGNTRVVGFGPKAPW*RCWEGG Trigger: TCCGCCTTCCCAGCAGCGGCACCAAGGGGCCTTAGG...CCCAAAACCTACCACTCGCGTGTTCCCCAAGCGCCTGGCTGCTGCTTCTTGCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CCA 90 bp | TTGGGGCTCCCTAAGGCCCCTTGGTGCCGCTGCTGGGAAGGCGGAGGCTCAGGATTCAGTTCCCAGAGCTaGGCTTCTCTTCCTCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: LGLPKAPWCRCWEGGGSGFSSQS*ASLPLP Trigger: AGGGAGAGGAAGAGAAGCCCAGCTCTGGGAACTGAA...TCCTGAGCCTCCGCCTTCCCAGCAGCGGCACCAAGGGGCCTTAGGGAGCCCCAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR TCA 90 bp | TTGGGGCTCCCTAAGGCCCCTTGGTGCCGCTGCTGGGAAGGCGGAGGCTCAGGACATAATTTGGCCGGATaGTTTGTAGGCAGGGACGTT | + |
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Preference number: 4 (lower is better) Translates to: LGLPKAPWCRCWEGGGSGHNLAG*FVGRDV Trigger: AACGTCCCTGCCTACAAATCATCCGGCCAAATTATG...TCCTGAGCCTCCGCCTTCCCAGCAGCGGCACCAAGGGGCCTTAGGGAGCCCCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR GCA 90 bp | AAGCAAGAAGCAGCAGCCAGGCGCTTGGGGAACACGCGAGTGGTAGGTTTTGGGTCAAAGGGCGCGCAGTaGATGTTGAAGGAACTCGGC | + |
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Preference number: 4 (lower is better) Translates to: KQEAAARRLGNTRVVGFGSKGAQ*MLKELG Trigger: GCCGAGTTCCTTCAACATGCACTGCGCGCCCTTTGA...CCCAAAACCTACCACTCGCGTGTTCCCCAAGCGCCTGGCTGCTGCTTCTTGCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR GCA 90 bp | AAGCAAGAAGCAGCAGCCAGGCGCTTGGGGAACACGCGAGTGGTAGGTTTTGGGTTCCTCTTCCTCCTCTaGTTCAGCCCTGTCTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: KQEAAARRLGNTRVVGFGFLFLL*FSPVLA Trigger: GGCCAAGACAGGGCTGAAGCAGAGGAGGAAGAGGAA...CCCAAAACCTACCACTCGCGTGTTCCCCAAGCGCCTGGCTGCTGCTTCTTGCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CCA 90 bp | GTCCACAAAGACAGCATTAAAGAGGGCTTACAAAACTGCAAGATTTTACAAAGATGGCGCCCGCCGCCTTaGCGGAGTCGCCGGGACACA | + |
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Preference number: 4 (lower is better) Translates to: VHKDSIKEGLQNCKILQRWRPPP*RSRRDT Trigger: TGTGTCCCGGCGACTCCGCCAAGGCGGCGGGCGCCA...TCTTTGTAAAATCTTGCAGTTTTGTAAGCCCTCTTTAATGCTGTCTTTGTGGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR GCA 90 bp | GTCCACAAAGACAGCATTAAAGAGGGCTTACAAAACTGCAAGATTTTACAAAGAAAGTCCGAGTCCCTCTaGTCCTTGGCGCCCGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: VHKDSIKEGLQNCKILQRKSESL*SLAPAA Trigger: GGCGGCGGGCGCCAAGGAGCAGAGGGACTCGGACTT...TCTTTGTAAAATCTTGCAGTTTTGTAAGCCCTCTTTAATGCTGTCTTTGTGGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CCA 90 bp | GTCCACAAAGACAGCATTAAAGAGGGCTTACAAAACTGCAAGATTTTACAAAGACTCCCTAAGGCCCCTTaGTGCCGCTGCTGGGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: VHKDSIKEGLQNCKILQRLPKAP*CRCWEG Trigger: GCCTTCCCAGCAGCGGCACCAAGGGGCCTTAGGGAG...TCTTTGTAAAATCTTGCAGTTTTGTAAGCCCTCTTTAATGCTGTCTTTGTGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR GCA 90 bp | GTCCACAAAGACAGCATTAAAGAGGGCTTACAAAACTGCAAGATTTTACAAAGACCGGGGTACAAGCCCTaGATCGAGGCGGCGAAGGAA | + |
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Preference number: 4 (lower is better) Translates to: VHKDSIKEGLQNCKILQRPGYKP*IEAAKE Trigger: TTCCTTCGCCGCCTCGATGCAGGGCTTGTACCCCGG...TCTTTGTAAAATCTTGCAGTTTTGTAAGCCCTCTTTAATGCTGTCTTTGTGGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR GCA 90 bp | GTCCACAAAGACAGCATTAAAGAGGGCTTACAAAACTGCAAGATTTTACAAAGAACCCCGGAGAGGTTCTaGTCAAAGGGCGCGCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: VHKDSIKEGLQNCKILQRTPERF*SKGAQC Trigger: GCACTGCGCGCCCTTTGAGCAGAACCTCTCCGGGGT...TCTTTGTAAAATCTTGCAGTTTTGTAAGCCCTCTTTAATGCTGTCTTTGTGGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CCA 90 bp | GTCCACAAAGACAGCATTAAAGAGGGCTTACAAAACTGCAAGATTTTACAAAGACCGGGCGCTGGGGGTTaGAAGCAAACGCACAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: VHKDSIKEGLQNCKILQRPGAGG*KQTHKK Trigger: CTTCTTGTGCGTTTGCTTCCAACCCCCAGCGCCCGG...TCTTTGTAAAATCTTGCAGTTTTGTAAGCCCTCTTTAATGCTGTCTTTGTGGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CCA 90 bp | GTCCACAAAGACAGCATTAAAGAGGGCTTACAAAACTGCAAGATTTTACAAAGAAAGGGAGCATGGGGCTaGGGGACGGGAAGCAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: VHKDSIKEGLQNCKILQRKGAWG*GTGSKK Trigger: CTTCTTGCTTCCCGTCCCCCAGCCCCATGCTCCCTT...TCTTTGTAAAATCTTGCAGTTTTGTAAGCCCTCTTTAATGCTGTCTTTGTGGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR GCA 90 bp | GTCCACAAAGACAGCATTAAAGAGGGCTTACAAAACTGCAAGATTTTACAAAGATCTGGCGGCCTCGTTTaGGGTCAGTTCCTGAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: VHKDSIKEGLQNCKILQRSGGLV*GQFLSF Trigger: GAAGCTCAGGAACTGACCGCAAACGAGGCCGCCAGA...TCTTTGTAAAATCTTGCAGTTTTGTAAGCCCTCTTTAATGCTGTCTTTGTGGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR TCA 90 bp | GTCCACAAAGACAGCATTAAAGAGGGCTTACAAAACTGCAAGATTTTACAAAGATTTGCGGTCAGTTCCTaGGCTTCGCATCCAGGGGTA | + |
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Preference number: 4 (lower is better) Translates to: VHKDSIKEGLQNCKILQRFAVSS*ASHPGV Trigger: TACCCCTGGATGCGAAGCTCAGGAACTGACCGCAAA...TCTTTGTAAAATCTTGCAGTTTTGTAAGCCCTCTTTAATGCTGTCTTTGTGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CCA 90 bp | GTCCACAAAGACAGCATTAAAGAGGGCTTACAAAACTGCAAGATTTTACAAAGAACAAGAAGTTTGTTCTaGGAAGGCTCCGGTAGCGAA | + |
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Preference number: 4 (lower is better) Translates to: VHKDSIKEGLQNCKILQRTRSLF*EGSGSE Trigger: TTCGCTACCGGAGCCTTCCCAGAACAAACTTCTTGT...TCTTTGTAAAATCTTGCAGTTTTGTAAGCCCTCTTTAATGCTGTCTTTGTGGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR TCA 90 bp | GTCCACAAAGACAGCATTAAAGAGGGCTTACAAAACTGCAAGATTTTACAAAGAAGCGAAAACCGAACTTaGGGCTGGATATTTAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: VHKDSIKEGLQNCKILQRSENRT*GWIFRK Trigger: TTTTCTAAATATCCAGCCTCAAGTTCGGTTTTCGCT...TCTTTGTAAAATCTTGCAGTTTTGTAAGCCCTCTTTAATGCTGTCTTTGTGGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR TCA 90 bp | GTCCACAAAGACAGCATTAAAGAGGGCTTACAAAACTGCAAGATTTTACAAAGAATTCGCATAATACAATaGACTCATAATTTGGCCGGA | + |
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Preference number: 4 (lower is better) Translates to: VHKDSIKEGLQNCKILQRIRIIQ*THNLAG Trigger: TCCGGCCAAATTATGAGTTCATTGTATTATGCGAAT...TCTTTGTAAAATCTTGCAGTTTTGTAAGCCCTCTTTAATGCTGTCTTTGTGGAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CAA 90 bp | TTGGGGCTCCCTAAGGCCCCTTGGTGCCGCTGCTGGGAAGGCGGAGGCTCAGGATTGGCGCCCGCCGCCTaGGCGGAGTCGCCGGGACAC | + |
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Preference number: 5 (lower is better) Translates to: LGLPKAPWCRCWEGGGSGLAPAA*AESPGH Trigger: GTGTCCCGGCGACTCCGCCAAGGCGGCGGGCGCCAA...TCCTGAGCCTCCGCCTTCCCAGCAGCGGCACCAAGGGGCCTTAGGGAGCCCCAA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS CCA 90 bp | CGGCCGCCAAGTCCGAGTCCCTCTGCTCCTTGGCGCCCGCCGCCTTaGCGGAGTCGCCGGGACACACCCCGGAGAGGTTCTGCTCAAAGG | + |
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Preference number: 5 (lower is better) Translates to: RPPSPSPSAPWRPPP*RSRRDTPRRGSAQR Trigger: CCTTTGAGCAGAACCTCTCCGGGGTGTGTCCCGGCGACTCCGCCAAGGCGGCGGGCGCCAAGGAGCAGAGGGACTCGGACTTGGCGGCCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CAA 90 bp | TTGGGGCTCCCTAAGGCCCCTTGGTGCCGCTGCTGGGAAGGCGGAGGCTCAGGATGCTTCAGCCCTGTCTaGGCCGGTGGTCCCCGGGCC | + |
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Preference number: 5 (lower is better) Translates to: LGLPKAPWCRCWEGGGSGCFSPV*AGGPRA Trigger: GGCCCGGGGACCACCGGCCAAGACAGGGCTGAAGCA...TCCTGAGCCTCCGCCTTCCCAGCAGCGGCACCAAGGGGCCTTAGGGAGCCCCAA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS GCA 90 bp | CCCGCCGCCTTGGCGGAGTCGCCGGGACACACCCCGGAGAGGTTCTaGTCAAAGGGCGCGCAGTGCATGTTGAAGGAACTCGGCTCGAGC | + |
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Preference number: 5 (lower is better) Translates to: PAALAESPGHTPERF*SKGAQCMLKELGSS Trigger: GCTCGAGCCGAGTTCCTTCAACATGCACTGCGCGCCCTTTGAGCAGAACCTCTCCGGGGTGTGTCCCGGCGACTCCGCCAAGGCGGCGGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CAA 90 bp | TTGGGGCTCCCTAAGGCCCCTTGGTGCCGCTGCTGGGAAGGCGGAGGCTCAGGACCCGGGCGCTGGGGGTaGGAAGCAAACGCACAAGAA | + |
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Preference number: 5 (lower is better) Translates to: LGLPKAPWCRCWEGGGSGPGRWG*EANAQE Trigger: TTCTTGTGCGTTTGCTTCCAACCCCCAGCGCCCGGG...TCCTGAGCCTCCGCCTTCCCAGCAGCGGCACCAAGGGGCCTTAGGGAGCCCCAA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CAA 90 bp | TTGGGGCTCCCTAAGGCCCCTTGGTGCCGCTGCTGGGAAGGCGGAGGCTCAGGAGGCGCGCAGTGCATGTaGAAGGAACTCGGCTCGAGC | + |
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Preference number: 5 (lower is better) Translates to: LGLPKAPWCRCWEGGGSGGAQCM*KELGSS Trigger: GCTCGAGCCGAGTTCCTTCAACATGCACTGCGCGCC...TCCTGAGCCTCCGCCTTCCCAGCAGCGGCACCAAGGGGCCTTAGGGAGCCCCAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS TCA 90 bp | GACACACCCCGGAGAGGTTCTGCTCAAAGGGCGCGCAGTGCATGTTaGAGGAACTCGGCTCGAGCCCATAGCCGGCCGCGTAGACGCCGG | + |
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Preference number: 5 (lower is better) Translates to: DTPRRGSAQRARSAC*RNSARAHSRPRRRR Trigger: CCGGCGTCTACGCGGCCGGCTATGGGCTCGAGCCGAGTTCCTTCAACATGCACTGCGCGCCCTTTGAGCAGAACCTCTCCGGGGTGTGTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CAA 90 bp | TTGGGGCTCCCTAAGGCCCCTTGGTGCCGCTGCTGGGAAGGCGGAGGCTCAGGACCCGGGCCCGCGGTCTaGTTCTCCTTTTTCCACTTC | + |
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Preference number: 5 (lower is better) Translates to: LGLPKAPWCRCWEGGGSGPGPAV*FSFFHF Trigger: GAAGTGGAAAAAGGAGAACAAGACCGCGGGCCCGGG...TCCTGAGCCTCCGCCTTCCCAGCAGCGGCACCAAGGGGCCTTAGGGAGCCCCAA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CAA 90 bp | AAGCAAGAAGCAGCAGCCAGGCGCTTGGGGAACACGCGAGTGGTAGGTTTTGGGGCAGCAGCCAGGCGCTaGGGGAACACGCGAGTGGTA | + |
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Preference number: 5 (lower is better) Translates to: KQEAAARRLGNTRVVGFGAAARR*GNTRVV Trigger: TACCACTCGCGTGTTCCCCAAGCGCCTGGCTGCTGC...CCCAAAACCTACCACTCGCGTGTTCCCCAAGCGCCTGGCTGCTGCTTCTTGCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CAA 90 bp | AAGCAAGAAGCAGCAGCCAGGCGCTTGGGGAACACGCGAGTGGTAGGTTTTGGGAAACGCACAAGAAGTTaGTTCTGGGAAGGCTCCGGT | + |
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Preference number: 5 (lower is better) Translates to: KQEAAARRLGNTRVVGFGKRTRS*FWEGSG Trigger: ACCGGAGCCTTCCCAGAACAAACTTCTTGTGCGTTT...CCCAAAACCTACCACTCGCGTGTTCCCCAAGCGCCTGGCTGCTGCTTCTTGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CAA 90 bp | GTCCACAAAGACAGCATTAAAGAGGGCTTACAAAACTGCAAGATTTTACAAAGAGAGTCCCTCTGCTCCTaGGCGCCCGCCGCCTTGGCG | + |
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Preference number: 5 (lower is better) Translates to: VHKDSIKEGLQNCKILQRESLCS*APAALA Trigger: CGCCAAGGCGGCGGGCGCCAAGGAGCAGAGGGACTC...TCTTTGTAAAATCTTGCAGTTTTGTAAGCCCTCTTTAATGCTGTCTTTGTGGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS-3UTR CAA 90 bp | GTCCACAAAGACAGCATTAAAGAGGGCTTACAAAACTGCAAGATTTTACAAAGAGTCTGGCGGCCTCGTTaGCGGTCAGTTCCTGAGCTT | + |
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Preference number: 5 (lower is better) Translates to: VHKDSIKEGLQNCKILQRVWRPR*RSVPEL Trigger: AAGCTCAGGAACTGACCGCAAACGAGGCCGCCAGAC...TCTTTGTAAAATCTTGCAGTTTTGTAAGCCCTCTTTAATGCTGTCTTTGTGGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS GCA 72 bp | CGGAAGTTACTCTCGGCCGCCAAGTCCGAGTCCCTCTaGTCCTTGGCGCCCGCCGCCTTGGCGGAGTCGCCG | + |
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Preference number: 6 (lower is better) Translates to: RKLLSAAKSESL*SLAPAALAESP Trigger: CGGCGACTCCGCCAAGGCGGCGGGCGCCAAGGAGCAGAGGGACTCGGACTTGGCGGCCGAGAGTAACTTCCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS CCA 72 bp | AGTCCGAGTCCCTCTGCTCCTTGGCGCCCGCCGCCTTaGCGGAGTCGCCGGGACACACCCCGGAGAGGTTCT | + |
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Preference number: 6 (lower is better) Translates to: SPSPSAPWRPPP*RSRRDTPRRGS Trigger: AGAACCTCTCCGGGGTGTGTCCCGGCGACTCCGCCAAGGCGGCGGGCGCCAAGGAGCAGAGGGACTCGGACT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS CAA 72 bp | AAGTCCGAGTCCCTCTGCTCCTTGGCGCCCGCCGCCTaGGCGGAGTCGCCGGGACACACCCCGGAGAGGTTC | + |
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Preference number: 6 (lower is better) Translates to: KSESLCSLAPAA*AESPGHTPERF Trigger: GAACCTCTCCGGGGTGTGTCCCGGCGACTCCGCCAAGGCGGCGGGCGCCAAGGAGCAGAGGGACTCGGACTT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS CAA 72 bp | TTACTCTCGGCCGCCAAGTCCGAGTCCCTCTGCTCCTaGGCGCCCGCCGCCTTGGCGGAGTCGCCGGGACAC | + |
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Preference number: 6 (lower is better) Translates to: LLSAAKSESLCS*APAALAESPGH Trigger: GTGTCCCGGCGACTCCGCCAAGGCGGCGGGCGCCAAGGAGCAGAGGGACTCGGACTTGGCGGCCGAGAGTAA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS CAA 90 bp | TCGGCCGCCAAGTCCGAGTCCCTCTGCTCCTTGGCGCCCGCCGCCTaGGCGGAGTCGCCGGGACACACCCCGGAGAGGTTCTGCTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: SAAKSESLCSLAPAA*AESPGHTPERFCSK Trigger: CTTTGAGCAGAACCTCTCCGGGGTGTGTCCCGGCGACTCCGCCAAGGCGGCGGGCGCCAAGGAGCAGAGGGACTCGGACTTGGCGGCCGA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS CAA 90 bp | ATCCGGAAGTTACTCTCGGCCGCCAAGTCCGAGTCCCTCTGCTCCTaGGCGCCCGCCGCCTTGGCGGAGTCGCCGGGACACACCCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: IRKLLSAAKSESLCS*APAALAESPGHTPE Trigger: CTCCGGGGTGTGTCCCGGCGACTCCGCCAAGGCGGCGGGCGCCAAGGAGCAGAGGGACTCGGACTTGGCGGCCGAGAGTAACTTCCGGAT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS TCA 72 bp | CGGAGAGGTTCTGCTCAAAGGGCGCGCAGTGCATGTTaGAGGAACTCGGCTCGAGCCCATAGCCGGCCGCGT | + |
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Preference number: 6 (lower is better) Translates to: RRGSAQRARSAC*RNSARAHSRPR Trigger: ACGCGGCCGGCTATGGGCTCGAGCCGAGTTCCTTCAACATGCACTGCGCGCCCTTTGAGCAGAACCTCTCCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS GCA 72 bp | TTGGCGGAGTCGCCGGGACACACCCCGGAGAGGTTCTaGTCAAAGGGCGCGCAGTGCATGTTGAAGGAACTC | + |
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Preference number: 6 (lower is better) Translates to: LAESPGHTPERF*SKGAQCMLKEL Trigger: GAGTTCCTTCAACATGCACTGCGCGCCCTTTGAGCAGAACCTCTCCGGGGTGTGTCCCGGCGACTCCGCCAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS CCA 72 bp | CGCCCGAACCCGCTCCATAGCCCGGGCGCTGGGGGTTaGAAGCAAACGCACAAGAAGTTTGTTCTGGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: RPNPLHSPGAGG*KQTHKKFVLGR Trigger: CCTTCCCAGAACAAACTTCTTGTGCGTTTGCTTCCAACCCCCAGCGCCCGGGCTATGGAGCGGGTTCGGGCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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| CDS CAA 72 bp | CGGGCGCTGGGGGTTGGAAGCAAACGCACAAGAAGTTaGTTCTGGGAAGGCTCCGGTAGCGAAAACCGAACT | + |
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Preference number: 6 (lower is better) Translates to: RALGVGSKRTRS*FWEGSGSENRT Trigger: AGTTCGGTTTTCGCTACCGGAGCCTTCCCAGAACAAACTTCTTGTGCGTTTGCTTCCAACCCCCAGCGCCCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000239165.9 |
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