Pregenerated sensors for HOXB2 (Homo sapiens)
Ensembl gene IDs: ENSG00000173917Ensembl transcript IDs: ENST00000330070.6, ENST00000504772.3, ENST00000571287.1
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TCCAGTAGACGGCCAAGGAGCGCGGGGGTCGAAAGGACCGGGAGGAGGAAACAGTGTTGGTGTAAGCCGTaGGCAGCCTGCGCGCCCCGC | + |
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Preference number: 4 (lower is better) Translates to: SSRRPRSAGVERTGRRKQCWCKP*AACAPR Trigger: GCGGGGCGCGCAGGCTGCGCACGGCTTACACCAACA...CTGTTTCCTCCTCCCGGTCCTTTCGACCCCCGCGCTCCTTGGCCGTCTACTGGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR CCA 90 bp | TCCAGTAGACGGCCAAGGAGCGCGGGGGTCGAAAGGACCGGGAGGAGGAAACAGGACGTCTTCTGGCAATaGCCCGGGCTCCAGCCCGCC | + |
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Preference number: 4 (lower is better) Translates to: SSRRPRSAGVERTGRRKQDVFWQ*PGLQPA Trigger: GGCGGGCTGGAGCCCGGGCCATTGCCAGAAGACGTC...CTGTTTCCTCCTCCCGGTCCTTTCGACCCCCGCGCTCCTTGGCCGTCTACTGGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR TCA 90 bp | GGTGGGAGAGGCTCGATTTTTCCAGTAGACGGCCAAGGAGCGCGGGGGTCGAAATGGCTCCTGGGTCTCTaGAGGGTGGAGGCGCCGGGC | + |
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Preference number: 4 (lower is better) Translates to: GGRGSIFPVDGQGARGSKWLLGL*RVEAPG Trigger: GCCCGGCGCCTCCACCCTTCAGAGACCCAGGAGCCA...TTTCGACCCCCGCGCTCCTTGGCCGTCTACTGGAAAAATCGAGCCTCTCCCACC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR GCA 90 bp | AGGCTCGATTTTTCCAGTAGACGGCCAAGGAGCGCGGGGGTCGAAAGGACCGGGGGCGGCTCTCGGTGCTaGGTCTGCCGCTTGTGCTTC | + |
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Preference number: 4 (lower is better) Translates to: RLDFSSRRPRSAGVERTGGGSRC*VCRLCF Trigger: GAAGCACAAGCGGCAGACGCAGCACCGAGAGCCGCC...CCCGGTCCTTTCGACCCCCGCGCTCCTTGGCCGTCTACTGGAAAAATCGAGCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR GCA 90 bp | GGTGGGAGAGGCTCGATTTTTCCAGTAGACGGCCAAGGAGCGCGGGGGTCGAAATCCGGCGGCTCTCGGTaGTGCGTCTGCCGCTTGTGC | + |
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Preference number: 4 (lower is better) Translates to: GGRGSIFPVDGQGARGSKSGGSR*CVCRLC Trigger: GCACAAGCGGCAGACGCAGCACCGAGAGCCGCCGGA...TTTCGACCCCCGCGCTCCTTGGCCGTCTACTGGAAAAATCGAGCCTCTCCCACC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR CCA 90 bp | GGTGGGAGAGGCTCGATTTTTCCAGTAGACGGCCAAGGAGCGCGGGGGTCGAAATGGGTCTCTGAAGGGTaGAGGCGCCGGGCTGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: GGRGSIFPVDGQGARGSKWVSEG*RRRAGG Trigger: GCCTCCAGCCCGGCGCCTCCACCCTTCAGAGACCCA...TTTCGACCCCCGCGCTCCTTGGCCGTCTACTGGAAAAATCGAGCCTCTCCCACC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR TCA 90 bp | TCCAGTAGACGGCCAAGGAGCGCGGGGGTCGAAAGGACCGGGAGGAGGAAACAGGTCGGGAAGGAAAGGTaGATCCTGGCGCCCCGAGAA | + |
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Preference number: 4 (lower is better) Translates to: SSRRPRSAGVERTGRRKQVGKER*ILAPRE Trigger: TTCTCGGGGCGCCAGGATTCACCTTTCCTTCCCGAC...CTGTTTCCTCCTCCCGGTCCTTTCGACCCCCGCGCTCCTTGGCCGTCTACTGGA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR GCA 90 bp | TCCAGTAGACGGCCAAGGAGCGCGGGGGTCGAAAGGACCGGGAGGAGGAAACAGTCTCGGTGCTGCGTCTaGCGCTTGTGCTTCATGCGC | + |
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Preference number: 4 (lower is better) Translates to: SSRRPRSAGVERTGRRKQSRCCV*RLCFMR Trigger: GCGCATGAAGCACAAGCGGCAGACGCAGCACCGAGA...CTGTTTCCTCCTCCCGGTCCTTTCGACCCCCGCGCTCCTTGGCCGTCTACTGGA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR CCA 90 bp | AGGCTCGATTTTTCCAGTAGACGGCCAAGGAGCGCGGGGGTCGAAAGGACCGGGCGCCGGGCTGGAGGCTaGGGAAGGTTTGCTCGAAAG | + |
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Preference number: 4 (lower is better) Translates to: RLDFSSRRPRSAGVERTGRRAGG*GRFARK Trigger: CTTTCGAGCAAACCTTCCCCAGCCTCCAGCCCGGCG...CCCGGTCCTTTCGACCCCCGCGCTCCTTGGCCGTCTACTGGAAAAATCGAGCCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR CCA 90 bp | AGGCTCGATTTTTCCAGTAGACGGCCAAGGAGCGCGGGGGTCGAAAGGACCGGGCGAGAAGACGTCTTCTaGCAATGGCCCGGGCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: RLDFSSRRPRSAGVERTGREDVF*QWPGLQ Trigger: CTGGAGCCCGGGCCATTGCCAGAAGACGTCTTCTCG...CCCGGTCCTTTCGACCCCCGCGCTCCTTGGCCGTCTACTGGAAAAATCGAGCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR GCA 90 bp | TCCAGTAGACGGCCAAGGAGCGCGGGGGTCGAAAGGACCGGGAGGAGGAAACAGAACCAGACTTTGACCTaGCTTTCGGTGAGGTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: SSRRPRSAGVERTGRRKQNQTLT*LSVRSS Trigger: GCTGGACCTCACCGAAAGGCAGGTCAAAGTCTGGTT...CTGTTTCCTCCTCCCGGTCCTTTCGACCCCCGCGCTCCTTGGCCGTCTACTGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR CCA 90 bp | TCCAGTAGACGGCCAAGGAGCGCGGGGGTCGAAAGGACCGGGAGGAGGAAACAGACGTGGCGGATTGGCTaGGTTTCTTGGCGGATTTCT | + |
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Preference number: 4 (lower is better) Translates to: SSRRPRSAGVERTGRRKQTWRIG*VSWRIS Trigger: AGAAATCCGCCAAGAAACCCAGCCAATCCGCCACGT...CTGTTTCCTCCTCCCGGTCCTTTCGACCCCCGCGCTCCTTGGCCGTCTACTGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR CCA 90 bp | GGTGGGAGAGGCTCGATTTTTCCAGTAGACGGCCAAGGAGCGCGGGGGTCGAAAATTCATGGCTTTCAATaGTGGGGGAGGGGGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: GGRGSIFPVDGQGARGSKIHGFQ*WGRGLL Trigger: CAGCAGCCCCCTCCCCCACCATTGAAAGCCATGAAT...TTTCGACCCCCGCGCTCCTTGGCCGTCTACTGGAAAAATCGAGCCTCTCCCACC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 24 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR CCA 90 bp | AGCAAAACACATAAGTCTATGCGACTGAGGGTGGGAGAGGCTCGATTTTTCCAGGTGGAGGCGCCGGGCTaGAGGCTGGGGAAGGTTTGC | + |
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Preference number: 4 (lower is better) Translates to: SKTHKSMRLRVGEARFFQVEAPG*RLGKVC Trigger: GCAAACCTTCCCCAGCCTCCAGCCCGGCGCCTCCAC...CTGGAAAAATCGAGCCTCTCCCACCCTCAGTCGCATAGACTTATGTGTTTTGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR CCA 90 bp | TTTAGCAAAACACATAAGTCTATGCGACTGAGGGTGGGAGAGGCTCGATTTTTCAGGCCTCCGGATAGCTaGAGACAGGAGTCGGCCGCG | + |
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Preference number: 4 (lower is better) Translates to: FSKTHKSMRLRVGEARFFRPPDS*RQESAA Trigger: CGCGGCCGACTCCTGTCTCCAGCTATCCGGAGGCCT...GAAAAATCGAGCCTCTCCCACCCTCAGTCGCATAGACTTATGTGTTTTGCTAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR CCA 90 bp | AGCAAAACACATAAGTCTATGCGACTGAGGGTGGGAGAGGCTCGATTTTTCCAGCTCGCTTTTGGCTCCTaGGTCTCTGAAGGGTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: SKTHKSMRLRVGEARFFQLAFGS*VSEGWR Trigger: CCTCCACCCTTCAGAGACCCAGGAGCCAAAAGCGAG...CTGGAAAAATCGAGCCTCTCCCACCCTCAGTCGCATAGACTTATGTGTTTTGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR CCA 90 bp | AGCAAAACACATAAGTCTATGCGACTGAGGGTGGGAGAGGCTCGATTTTTCCAGCCGGAGAAGGAGACGTaGCGGATTGGCTGGGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: SKTHKSMRLRVGEARFFQPEKET*RIGWVS Trigger: AGAAACCCAGCCAATCCGCCACGTCTCCTTCTCCGG...CTGGAAAAATCGAGCCTCTCCCACCCTCAGTCGCATAGACTTATGTGTTTTGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR GCA 90 bp | AGCAAAACACATAAGTCTATGCGACTGAGGGTGGGAGAGGCTCGATTTTTCCAGAGGCTGGGGAAGGTTTaGTCGAAAGGAGGAGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: SKTHKSMRLRVGEARFFQRLGKV*SKGGGG Trigger: TCCTCCTCCTCCTTTCGAGCAAACCTTCCCCAGCCT...CTGGAAAAATCGAGCCTCTCCCACCCTCAGTCGCATAGACTTATGTGTTTTGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR CCA 90 bp | AGCAAAACACATAAGTCTATGCGACTGAGGGTGGGAGAGGCTCGATTTTTCCAGAGGAAAGGTGAATCCTaGCGCCCCGAGAAGACGTCT | + |
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Preference number: 4 (lower is better) Translates to: SKTHKSMRLRVGEARFFQRKGES*RPEKTS Trigger: AGACGTCTTCTCGGGGCGCCAGGATTCACCTTTCCT...CTGGAAAAATCGAGCCTCTCCCACCCTCAGTCGCATAGACTTATGTGTTTTGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR TCA 90 bp | AGCAAAACACATAAGTCTATGCGACTGAGGGTGGGAGAGGCTCGATTTTTCCAGATAAGTCTATGCGACTaGGGGTGGGAGAGGCTCGAT | + |
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Preference number: 4 (lower is better) Translates to: SKTHKSMRLRVGEARFFQISLCD*GWERLD Trigger: ATCGAGCCTCTCCCACCCTCAGTCGCATAGACTTAT...CTGGAAAAATCGAGCCTCTCCCACCCTCAGTCGCATAGACTTATGTGTTTTGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR CCA 90 bp | TTTAGCAAAACACATAAGTCTATGCGACTGAGGGTGGGAGAGGCTCGATTTTTCGGAGACGTGGCGGATTaGCTGGGTTTCTTGGCGGAT | + |
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Preference number: 4 (lower is better) Translates to: FSKTHKSMRLRVGEARFFGDVAD*LGFLAD Trigger: ATCCGCCAAGAAACCCAGCCAATCCGCCACGTCTCC...GAAAAATCGAGCCTCTCCCACCCTCAGTCGCATAGACTTATGTGTTTTGCTAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR CCA 90 bp | AGCAAAACACATAAGTCTATGCGACTGAGGGTGGGAGAGGCTCGATTTTTCCAGGTAATGGAGCGATTTTaGGAGGGGGAGATTTCGGTC | + |
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Preference number: 4 (lower is better) Translates to: SKTHKSMRLRVGEARFFQVMERF*EGEISV Trigger: GACCGAAATCTCCCCCTCCCAAAATCGCTCCATTAC...CTGGAAAAATCGAGCCTCTCCCACCCTCAGTCGCATAGACTTATGTGTTTTGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR TCA 90 bp | AGCAAAACACATAAGTCTATGCGACTGAGGGTGGGAGAGGCTCGATTTTTCCAGCACAGAGCGTACTGGTaGAAAAATCCAGCTCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: SKTHKSMRLRVGEARFFQHRAYW*KNPALP Trigger: AGGAAGAGCTGGATTTTTTCACCAGTACGCTCTGTG...CTGGAAAAATCGAGCCTCTCCCACCCTCAGTCGCATAGACTTATGTGTTTTGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR CCA 90 bp | AGCAAAACACATAAGTCTATGCGACTGAGGGTGGGAGAGGCTCGATTTTTCCAGTTCCTGAGATTTCATTaGAAGGAGTCTACCAAACGG | + |
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Preference number: 4 (lower is better) Translates to: SKTHKSMRLRVGEARFFQFLRFH*KESTKR Trigger: CCGTTTGGTAGACTCCTTCCAATGAAATCTCAGGAA...CTGGAAAAATCGAGCCTCTCCCACCCTCAGTCGCATAGACTTATGTGTTTTGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR CCA 90 bp | TTTAGCAAAACACATAAGTCTATGCGACTGAGGGTGGGAGAGGCTCGATTTTTCATTGGCTGGGTTTCTTaGCGGATTTCTTCTCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: FSKTHKSMRLRVGEARFFIGWVS*RISSLS Trigger: TGAAAGAGAAGAAATCCGCCAAGAAACCCAGCCAAT...GAAAAATCGAGCCTCTCCCACCCTCAGTCGCATAGACTTATGTGTTTTGCTAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR CCA 90 bp | TTTAGCAAAACACATAAGTCTATGCGACTGAGGGTGGGAGAGGCTCGATTTTTCCAAATTCAAAATTCATaGCTTTCAATGGTGGGGGAG | + |
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Preference number: 4 (lower is better) Translates to: FSKTHKSMRLRVGEARFFQIQNS*LSMVGE Trigger: CTCCCCCACCATTGAAAGCCATGAATTTTGAATTTG...GAAAAATCGAGCCTCTCCCACCCTCAGTCGCATAGACTTATGTGTTTTGCTAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS CCA 90 bp | CGACCCCGGAGGCCGGAACGGCGGAGGCGGCCGGAGAAGGAGACGTaGCGGATTGGCTGGGTTTCTTGGCGGATTTCTTCTCTTTCATCC | + |
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Preference number: 5 (lower is better) Translates to: RPRRPERRRRPEKET*RIGWVSWRISSLSS Trigger: GGATGAAAGAGAAGAAATCCGCCAAGAAACCCAGCCAATCCGCCACGTCTCCTTCTCCGGCCGCCTCCGCCGTTCCGGCCTCCGGGGTCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS CCA 90 bp | CGGAGGCGGCCGGAGAAGGAGACGTGGCGGATTGGCTGGGTTTCTTaGCGGATTTCTTCTCTTTCATCCAAGGGAACTCGGGGGCCGGGG | + |
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Preference number: 5 (lower is better) Translates to: RRRPEKETWRIGWVS*RISSLSSKGTRGPG Trigger: CCCCGGCCCCCGAGTTCCCTTGGATGAAAGAGAAGAAATCCGCCAAGAAACCCAGCCAATCCGCCACGTCTCCTTCTCCGGCCGCCTCCG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS TCA 90 bp | GAGACAGGAGTCGGCCGCGAAGAAGTTGAGGTCGGGAAGGAAAGGTaGATCCTGGCGCCCCGAGAAGACGTCTTCTGGCAATGGCCCGGG | + |
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Preference number: 5 (lower is better) Translates to: ETGVGREEVEVGKER*ILAPREDVFWQWPG Trigger: CCCGGGCCATTGCCAGAAGACGTCTTCTCGGGGCGCCAGGATTCACCTTTCCTTCCCGACCTCAACTTCTTCGCGGCCGACTCCTGTCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000330070.6 ENST00000571287.1 |
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| CDS-3UTR CAA 90 bp | AGGCTCGATTTTTCCAGTAGACGGCCAAGGAGCGCGGGGGTCGAAAGGACCGGGAGGAGACGTGGCGGATaGGCTGGGTTTCTTGGCGGA | + |
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Preference number: 5 (lower is better) Translates to: RLDFSSRRPRSAGVERTGRRRGG*AGFLGG Trigger: TCCGCCAAGAAACCCAGCCAATCCGCCACGTCTCCT...CCCGGTCCTTTCGACCCCCGCGCTCCTTGGCCGTCTACTGGAAAAATCGAGCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS TCA 90 bp | AGAGGCCTCCGGATAGCTGGAGACAGGAGTCGGCCGCGAAGAAGTTaGGGTCGGGAAGGAAAGGTGAATCCTGGCGCCCCGAGAAGACGT | + |
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Preference number: 5 (lower is better) Translates to: RGLRIAGDRSRPRRS*GREGKVNPGAPRRR Trigger: ACGTCTTCTCGGGGCGCCAGGATTCACCTTTCCTTCCCGACCTCAACTTCTTCGCGGCCGACTCCTGTCTCCAGCTATCCGGAGGCCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000330070.6 ENST00000571287.1 |
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| CDS CCA 90 bp | CCGGAACGGCGGAGGCGGCCGGAGAAGGAGACGTGGCGGATTGGCTaGGTTTCTTGGCGGATTTCTTCTCTTTCATCCAAGGGAACTCGG | + |
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Preference number: 5 (lower is better) Translates to: PERRRRPEKETWRIG*VSWRISSLSSKGTR Trigger: CCGAGTTCCCTTGGATGAAAGAGAAGAAATCCGCCAAGAAACCCAGCCAATCCGCCACGTCTCCTTCTCCGGCCGCCTCCGCCGTTCCGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS CCA 90 bp | GAGGCCGGAACGGCGGAGGCGGCCGGAGAAGGAGACGTGGCGGATTaGCTGGGTTTCTTGGCGGATTTCTTCTCTTTCATCCAAGGGAAC | + |
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Preference number: 5 (lower is better) Translates to: EAGTAEAAGEGDVAD*LGFLADFFSFIQGN Trigger: GTTCCCTTGGATGAAAGAGAAGAAATCCGCCAAGAAACCCAGCCAATCCGCCACGTCTCCTTCTCCGGCCGCCTCCGCCGTTCCGGCCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS CCA 90 bp | CTGTCGAGAGAACCCTGTAGGCTAGGGGAGAGGCCTCCGGATAGCTaGAGACAGGAGTCGGCCGCGAAGAAGTTGAGGTCGGGAAGGAAA | + |
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Preference number: 5 (lower is better) Translates to: LSREPCRLGERPPDS*RQESAAKKLRSGRK Trigger: TTTCCTTCCCGACCTCAACTTCTTCGCGGCCGACTCCTGTCTCCAGCTATCCGGAGGCCTCTCCCCTAGCCTACAGGGTTCTCTCGACAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS CCA 90 bp | TCTGGCCTGGCTTCAAATCCCACAGCGAAGAATCAAAAGTCAGACTaGATGAGGCACACCCAGGCCCGCAGACCCGCCGCTCTCCTTCCC | + |
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Preference number: 5 (lower is better) Translates to: SGLASNPTAKNQKSD*MRHTQARRPAALLP Trigger: GGGAAGGAGAGCGGCGGGTCTGCGGGCCTGGGTGTGCCTCATCCAGTCTGACTTTTGATTCTTCGCTGTGGGATTTGAAGCCAGGCCAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504772.3 |
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| CDS-3UTR CAA 90 bp | AGGCTCGATTTTTCCAGTAGACGGCCAAGGAGCGCGGGGGTCGAAAGGACCGGGATCTTCGGCTCGCTTTaGGCTCCTGGGTCTCTGAAG | + |
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Preference number: 5 (lower is better) Translates to: RLDFSSRRPRSAGVERTGIFGSL*APGSLK Trigger: CTTCAGAGACCCAGGAGCCAAAAGCGAGCCGAAGAT...CCCGGTCCTTTCGACCCCCGCGCTCCTTGGCCGTCTACTGGAAAAATCGAGCCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR CAA 90 bp | TCCAGTAGACGGCCAAGGAGCGCGGGGGTCGAAAGGACCGGGAGGAGGAAACAGTGTAATGGAGCGATTTaGGGAGGGGGAGATTTCGGT | + |
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Preference number: 5 (lower is better) Translates to: SSRRPRSAGVERTGRRKQCNGAI*GGGDFG Trigger: ACCGAAATCTCCCCCTCCCAAAATCGCTCCATTACA...CTGTTTCCTCCTCCCGGTCCTTTCGACCCCCGCGCTCCTTGGCCGTCTACTGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS-3UTR CAA 90 bp | TCCAGTAGACGGCCAAGGAGCGCGGGGGTCGAAAGGACCGGGAGGAGGAAACAGATTCCTGAGATTTCATaGGAAGGAGTCTACCAAACG | + |
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Preference number: 5 (lower is better) Translates to: SSRRPRSAGVERTGRRKQIPEIS*EGVYQT Trigger: CGTTTGGTAGACTCCTTCCAATGAAATCTCAGGAAT...CTGTTTCCTCCTCCCGGTCCTTTCGACCCCCGCGCTCCTTGGCCGTCTACTGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS CCA 90 bp | CACAACCTATGTTGGCTCCTGGCTTATCCTGACAATTGCTGCCTCTaGGTGACTGGTACTCTAAATCCCGGTCCTGTTGGTCCAGGGGAA | + |
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Preference number: 5 (lower is better) Translates to: HNLCWLLAYPDNCCL*VTGTLNPGPVGPGE Trigger: TTCCCCTGGACCAACAGGACCGGGATTTAGAGTACCAGTCACCCAGAGGCAGCAATTGTCAGGATAAGCCAGGAGCCAACATAGGTTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504772.3 |
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| CDS TCA 90 bp | AAACAGGTTAGGGAAACTGCAGGTCGATGGCACAGAGCGTACTGGTaGAAAAATCCAGCTCTTCCTCGGAAAAAGGGACCGGGCTGTCGA | + |
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Preference number: 5 (lower is better) Translates to: KQVRETAGRWHRAYW*KNPALPRKKGPGCR Trigger: TCGACAGCCCGGTCCCTTTTTCCGAGGAAGAGCTGGATTTTTTCACCAGTACGCTCTGTGCCATCGACCTGCAGTTTCCCTAACCTGTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS GCA 90 bp | CTGTGTCACAACCTATGTTGGCTCCTGGCTTATCCTGACAATTGCTaGCTCTGGGTGACTGGTACTCTAAATCCCGGTCCTGTTGGTCCA | + |
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Preference number: 5 (lower is better) Translates to: LCHNLCWLLAYPDNC*LWVTGTLNPGPVGP Trigger: TGGACCAACAGGACCGGGATTTAGAGTACCAGTCACCCAGAGGCAGCAATTGTCAGGATAAGCCAGGAGCCAACATAGGTTGTGACACAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504772.3 |
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| CDS GCA 90 bp | CCTCTGTGTCACAACCTATGTTGGCTCCTGGCTTATCCTGACAATTaGTGCCTCTGGGTGACTGGTACTCTAAATCCCGGTCCTGTTGGT | + |
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Preference number: 5 (lower is better) Translates to: PLCHNLCWLLAYPDN*CLWVTGTLNPGPVG Trigger: ACCAACAGGACCGGGATTTAGAGTACCAGTCACCCAGAGGCAGCAATTGTCAGGATAAGCCAGGAGCCAACATAGGTTGTGACACAGAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504772.3 |
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| CDS-3UTR CAA 90 bp | AGCAAAACACATAAGTCTATGCGACTGAGGGTGGGAGAGGCTCGATTTTTCCAGTCGGCCGCGAAGAAGTaGAGGTCGGGAAGGAAAGGT | + |
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Preference number: 5 (lower is better) Translates to: SKTHKSMRLRVGEARFFQSAAKK*RSGRKG Trigger: ACCTTTCCTTCCCGACCTCAACTTCTTCGCGGCCGA...CTGGAAAAATCGAGCCTCTCCCACCCTCAGTCGCATAGACTTATGTGTTTTGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS CCA 90 bp | CAATTGCTGCCTCTGGGTGACTGGTACTCTAAATCCCGGTCCTGTTaGTCCAGGGGAAAGTCTGGAGGCCCAGGAAATAAACTGCTTTTT | + |
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Preference number: 5 (lower is better) Translates to: QLLPLGDWYSKSRSC*SRGKSGGPGNKLLF Trigger: AAAAAGCAGTTTATTTCCTGGGCCTCCAGACTTTCCCCTGGACCAACAGGACCGGGATTTAGAGTACCAGTCACCCAGAGGCAGCAATTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504772.3 |
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| CDS CCA 90 bp | AAATATGCAAAGGGCCTGTCTAGTCCTCTGTGTCACAACCTATGTTaGCTCCTGGCTTATCCTGACAATTGCTGCCTCTGGGTGACTGGT | + |
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Preference number: 5 (lower is better) Translates to: KYAKGLSSPLCHNLC*LLAYPDNCCLWVTG Trigger: ACCAGTCACCCAGAGGCAGCAATTGTCAGGATAAGCCAGGAGCCAACATAGGTTGTGACACAGAGGACTAGACAGGCCCTTTGCATATTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504772.3 |
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| CDS CAA 90 bp | CGGCGGCGGTGGCGGCGGCAGAGCAGGCCCATCTTCGGCTCGCTTTaGGCTCCTGGGTCTCTGAAGGGTGGAGGCGCCGGGCTGGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: RRRWRRQSRPIFGSL*APGSLKGGGAGLEA Trigger: AGCCTCCAGCCCGGCGCCTCCACCCTTCAGAGACCCAGGAGCCAAAAGCGAGCCGAAGATGGGCCTGCTCTGCCGCCGCCACCGCCGCCG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS CAA 72 bp | TGGCGGCGGCAGAGCAGGCCCATCTTCGGCTCGCTTTaGGCTCCTGGGTCTCTGAAGGGTGGAGGCGCCGGG | + |
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Preference number: 6 (lower is better) Translates to: WRRQSRPIFGSL*APGSLKGGGAG Trigger: CCCGGCGCCTCCACCCTTCAGAGACCCAGGAGCCAAAAGCGAGCCGAAGATGGGCCTGCTCTGCCGCCGCCA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS CCA 72 bp | GCAGAGCAGGCCCATCTTCGGCTCGCTTTTGGCTCCTaGGTCTCTGAAGGGTGGAGGCGCCGGGCTGGAGGC | + |
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Preference number: 6 (lower is better) Translates to: AEQAHLRLAFGS*VSEGWRRRAGG Trigger: GCCTCCAGCCCGGCGCCTCCACCCTTCAGAGACCCAGGAGCCAAAAGCGAGCCGAAGATGGGCCTGCTCTGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS CCA 72 bp | AGGCCGGAACGGCGGAGGCGGCCGGAGAAGGAGACGTaGCGGATTGGCTGGGTTTCTTGGCGGATTTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: RPERRRRPEKET*RIGWVSWRISS Trigger: AGAAGAAATCCGCCAAGAAACCCAGCCAATCCGCCACGTCTCCTTCTCCGGCCGCCTCCGCCGTTCCGGCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS CAA 90 bp | GCGGAGGCGGCCGGAGAAGGAGACGTGGCGGATTGGCTGGGTTTCTaGGCGGATTTCTTCTCTTTCATCCAAGGGAACTCGGGGGCCGGG | + |
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Preference number: 6 (lower is better) Translates to: AEAAGEGDVADWLGF*ADFFSFIQGNSGAG Trigger: CCCGGCCCCCGAGTTCCCTTGGATGAAAGAGAAGAAATCCGCCAAGAAACCCAGCCAATCCGCCACGTCTCCTTCTCCGGCCGCCTCCGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS CAA 90 bp | GAGAGGCCTCCGGATAGCTGGAGACAGGAGTCGGCCGCGAAGAAGTaGAGGTCGGGAAGGAAAGGTGAATCCTGGCGCCCCGAGAAGACG | + |
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Preference number: 6 (lower is better) Translates to: ERPPDSWRQESAAKK*RSGRKGESWRPEKT Trigger: CGTCTTCTCGGGGCGCCAGGATTCACCTTTCCTTCCCGACCTCAACTTCTTCGCGGCCGACTCCTGTCTCCAGCTATCCGGAGGCCTCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000330070.6 ENST00000571287.1 |
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| CDS TCA 72 bp | CGGATAGCTGGAGACAGGAGTCGGCCGCGAAGAAGTTaGGGTCGGGAAGGAAAGGTGAATCCTGGCGCCCCG | + |
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Preference number: 6 (lower is better) Translates to: RIAGDRSRPRRS*GREGKVNPGAP Trigger: CGGGGCGCCAGGATTCACCTTTCCTTCCCGACCTCAACTTCTTCGCGGCCGACTCCTGTCTCCAGCTATCCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000330070.6 ENST00000571287.1 |
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| CDS TCA 72 bp | GTCGGCCGCGAAGAAGTTGAGGTCGGGAAGGAAAGGTaGATCCTGGCGCCCCGAGAAGACGTCTTCTGGCAA | + |
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Preference number: 6 (lower is better) Translates to: VGREEVEVGKER*ILAPREDVFWQ Trigger: TTGCCAGAAGACGTCTTCTCGGGGCGCCAGGATTCACCTTTCCTTCCCGACCTCAACTTCTTCGCGGCCGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000330070.6 ENST00000571287.1 |
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| CDS CCA 72 bp | ACGGCGGAGGCGGCCGGAGAAGGAGACGTGGCGGATTaGCTGGGTTTCTTGGCGGATTTCTTCTCTTTCATC | + |
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Preference number: 6 (lower is better) Translates to: TAEAAGEGDVAD*LGFLADFFSFI Trigger: GATGAAAGAGAAGAAATCCGCCAAGAAACCCAGCCAATCCGCCACGTCTCCTTCTCCGGCCGCCTCCGCCGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS CCA 72 bp | GCTTCAAATCCCACAGCGAAGAATCAAAAGTCAGACTaGATGAGGCACACCCAGGCCCGCAGACCCGCCGCT | + |
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Preference number: 6 (lower is better) Translates to: ASNPTAKNQKSD*MRHTQARRPAA Trigger: AGCGGCGGGTCTGCGGGCCTGGGTGTGCCTCATCCAGTCTGACTTTTGATTCTTCGCTGTGGGATTTGAAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504772.3 |
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| CDS CCA 72 bp | CCGGAGAAGGAGACGTGGCGGATTGGCTGGGTTTCTTaGCGGATTTCTTCTCTTTCATCCAAGGGAACTCGG | + |
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Preference number: 6 (lower is better) Translates to: PEKETWRIGWVS*RISSLSSKGTR Trigger: CCGAGTTCCCTTGGATGAAAGAGAAGAAATCCGCCAAGAAACCCAGCCAATCCGCCACGTCTCCTTCTCCGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000330070.6 |
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| CDS GCA 72 bp | GAACAAACCAGGAGGCAGATGGGGGAGATCGATCCTTaGTTCCCGCTTACCAGGTTTACAAGGAACCAGGCA | + |
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Preference number: 6 (lower is better) Translates to: EQTRRQMGEIDP*FPLTRFTRNQA Trigger: TGCCTGGTTCCTTGTAAACCTGGTAAGCGGGAAGCAAGGATCGATCTCCCCCATCTGCCTCCTGGTTTGTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000504772.3 |
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| CDS CCA 72 bp | CCTCTGGGTGACTGGTACTCTAAATCCCGGTCCTGTTaGTCCAGGGGAAAGTCTGGAGGCCCAGGAAATAAA | + |
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Preference number: 6 (lower is better) Translates to: PLGDWYSKSRSC*SRGKSGGPGNK Trigger: TTTATTTCCTGGGCCTCCAGACTTTCCCCTGGACCAACAGGACCGGGATTTAGAGTACCAGTCACCCAGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504772.3 |
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| CDS CAA 72 bp | AGAACAAACCAGGAGGCAGATGGGGGAGATCGATCCTaGCTTCCCGCTTACCAGGTTTACAAGGAACCAGGC | + |
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Preference number: 6 (lower is better) Translates to: RTNQEADGGDRS*LPAYQVYKEPG Trigger: GCCTGGTTCCTTGTAAACCTGGTAAGCGGGAAGCAAGGATCGATCTCCCCCATCTGCCTCCTGGTTTGTTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000504772.3 |
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| CDS TCA 72 bp | AGGGAAACTGCAGGTCGATGGCACAGAGCGTACTGGTaGAAAAATCCAGCTCTTCCTCGGAAAAAGGGACCG | + |
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Preference number: 6 (lower is better) Translates to: RETAGRWHRAYW*KNPALPRKKGP Trigger: CGGTCCCTTTTTCCGAGGAAGAGCTGGATTTTTTCACCAGTACGCTCTGTGCCATCGACCTGCAGTTTCCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000330070.6 ENST00000504772.3 |
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| CDS CCA 72 bp | TGTTGGCTCCTGGCTTATCCTGACAATTGCTGCCTCTaGGTGACTGGTACTCTAAATCCCGGTCCTGTTGGT | + |
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Preference number: 6 (lower is better) Translates to: CWLLAYPDNCCL*VTGTLNPGPVG Trigger: ACCAACAGGACCGGGATTTAGAGTACCAGTCACCCAGAGGCAGCAATTGTCAGGATAAGCCAGGAGCCAACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504772.3 |
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| CDS CCA 72 bp | AAGGGCCTGTCTAGTCCTCTGTGTCACAACCTATGTTaGCTCCTGGCTTATCCTGACAATTGCTGCCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: KGLSSPLCHNLC*LLAYPDNCCLW Trigger: CCAGAGGCAGCAATTGTCAGGATAAGCCAGGAGCCAACATAGGTTGTGACACAGAGGACTAGACAGGCCCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504772.3 |
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| CDS CAA 90 bp | CAAGGAACCAGGCAGGGTGTGGTGGGGGATAGACAGGACATGGTGTaGATACGTGAAATGAAGTTGTTGGTCAAGACTGGTGGGTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: QGTRQGVVGDRQDMV*IREMKLLVKTGGSA Trigger: TGCAGACCCACCAGTCTTGACCAACAACTTCATTTCACGTATCAACACCATGTCCTGTCTATCCCCCACCACACCCTGCCTGGTTCCTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000504772.3 |
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| CDS CAA 72 bp | AGGCAGGGTGTGGTGGGGGATAGACAGGACATGGTGTaGATACGTGAAATGAAGTTGTTGGTCAAGACTGGT | + |
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Preference number: 6 (lower is better) Translates to: RQGVVGDRQDMV*IREMKLLVKTG Trigger: ACCAGTCTTGACCAACAACTTCATTTCACGTATCAACACCATGTCCTGTCTATCCCCCACCACACCCTGCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000504772.3 |
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| CDS TCA 72 bp | TCTGTGTCACAACCTATGTTGGCTCCTGGCTTATCCTaGCAATTGCTGCCTCTGGGTGACTGGTACTCTAAA | + |
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Preference number: 6 (lower is better) Translates to: SVSQPMLAPGLS*QLLPLGDWYSK Trigger: TTTAGAGTACCAGTCACCCAGAGGCAGCAATTGTCAGGATAAGCCAGGAGCCAACATAGGTTGTGACACAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504772.3 |
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