RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HOXA3 (Homo sapiens)

Ensembl gene IDs: ENSG00000105997

Ensembl transcript IDs: ENST00000317201.6, ENST00000317201.7, ENST00000396352.8, ENST00000521401.1, ENST00000522456.1, ENST00000522788.5, ENST00000612286.4, ENST00000612286.5

Found 192 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCCTCAGCCTGCCTCCGCAGCAGCTGGGAACCGGGCAGCCCAGCTaGCCCGCCGCACGGCGTTACCAGAGCTGCCGCAGCCGCCTGGAG +
Preference number: 1 (lower is better)
Translates to: ALSLPPQQLGTGQPS*PAARRYQSCRSRLE
Trigger: CTCCAGGCGGCTGCGGCAGCTCTGGTAACGCCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCTGAGGGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR CCA 90 bp CAGCACTCGGCAGCCCCTGCGCCCTCAGCCTGCCTCCGCAGCAGCTaGGAACCGGGCAGCCCAGCTGGCCCGCCGCACGGCGTTACCAGA +
Preference number: 1 (lower is better)
Translates to: QHSAAPAPSACLRSS*EPGSPAGPPHGVTR
Trigger: TCTGGTAACGCCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCTGAGGGCGCAGGGGCTGCCGAGTGCTG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR CCA 90 bp GAGGAAGAGCATGGAGCAGAAGACCGCCCTGCGTTATCCCCCGGCTaGGCCGCGGGGCACCTGTGCGCTCCCGCTGCGCCTTGGGCCGGG +
Preference number: 1 (lower is better)
Translates to: EEEHGAEDRPALSPG*AAGHLCAPAAPWAG
Trigger: CCCGGCCCAAGGCGCAGCGGGAGCGCACAGGTGCCCCGCGGCCCAGCCGGGGGATAACGCAGGGCGGTCTTCTGCTCCATGCTCTTCCTC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR GCA 90 bp CTGGCCAGGCCCCATGCTGGAGCCAGAGGGCTGCTGCGTCCGGCCTaGTCTGCCGGCTCGCCTCGGCCTGAATTCCACGCAGACCCACGT +
Preference number: 1 (lower is better)
Translates to: LARPHAGARGLLRPA*SAGSPRPEFHADPR
Trigger: ACGTGGGTCTGCGTGGAATTCAGGCCGAGGCGAGCCGGCAGAGCAGGCCGGACGCAGCAGCCCTCTGGCTCCAGCATGGGGCCTGGCCAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR CCA 90 bp TCCCCCGGCTGGGCCGCGGGGCACCTGTGCGCTCCCGCTGCGCCTTaGGCCGGGATGTCTTTGTTTCTTCCGTGCACAGCACTCGGCAGC +
Preference number: 1 (lower is better)
Translates to: SPGWAAGHLCAPAAP*AGMSLFLPCTALGS
Trigger: GCTGCCGAGTGCTGTGCACGGAAGAAACAAAGACATCCCGGCCCAAGGCGCAGCGGGAGCGCACAGGTGCCCCGCGGCCCAGCCGGGGGA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR GCA 90 bp GAAGACCGCCCTGCGTTATCCCCCGGCTGGGCCGCGGGGCACCTGTaGGCTCCCGCTGCGCCTTGGGCCGGGATGTCTTTGTTTCTTCCG +
Preference number: 1 (lower is better)
Translates to: EDRPALSPGWAAGHL*APAAPWAGMSLFLP
Trigger: CGGAAGAAACAAAGACATCCCGGCCCAAGGCGCAGCGGGAGCGCACAGGTGCCCCGCGGCCCAGCCGGGGGATAACGCAGGGCGGTCTTC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR GCA 90 bp TGGTCCGCTTTGACCCGAGGAAGAGCATGGAGCAGAAGACCGCCCTaGGTTATCCCCCGGCTGGGCCGCGGGGCACCTGTGCGCTCCCGC +
Preference number: 1 (lower is better)
Translates to: WSALTRGRAWSRRPP*VIPRLGRGAPVRSR
Trigger: GCGGGAGCGCACAGGTGCCCCGCGGCCCAGCCGGGGGATAACGCAGGGCGGTCTTCTGCTCCATGCTCTTCCTCGGGTCAAAGCGGACCA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR GCA 90 bp TGCGTTATCCCCCGGCTGGGCCGCGGGGCACCTGTGCGCTCCCGCTaGGCCTTGGGCCGGGATGTCTTTGTTTCTTCCGTGCACAGCACT +
Preference number: 1 (lower is better)
Translates to: CVIPRLGRGAPVRSR*ALGRDVFVSSVHST
Trigger: AGTGCTGTGCACGGAAGAAACAAAGACATCCCGGCCCAAGGCGCAGCGGGAGCGCACAGGTGCCCCGCGGCCCAGCCGGGGGATAACGCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR CCA 90 bp CCAGCCGCCATCCTGAGAATTCGCCGAGCTTCCAGGCGAATAGCCTaGCCAGGCCCCATGCTGGAGCCAGAGGGCTGCTGCGTCCGGCCT +
Preference number: 1 (lower is better)
Translates to: PAAILRIRRASRRIA*PGPMLEPEGCCVRP
Trigger: AGGCCGGACGCAGCAGCCCTCTGGCTCCAGCATGGGGCCTGGCCAGGCTATTCGCCTGGAAGCTCGGCGAATTCTCAGGATGGCGGCTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR CCA 90 bp CGAGGTTTAGGCGTTAGTTGGTCCGCTTTGACCCGAGGAAGAGCATaGAGCAGAAGACCGCCCTGCGTTATCCCCCGGCTGGGCCGCGGG +
Preference number: 1 (lower is better)
Translates to: RGLGVSWSALTRGRA*SRRPPCVIPRLGRG
Trigger: CCCGCGGCCCAGCCGGGGGATAACGCAGGGCGGTCTTCTGCTCCATGCTCTTCCTCGGGTCAAAGCGGACCAACTAACGCCTAAACCTCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR GCA 90 bp AGCCTGCCTCCGCAGCAGCTGGGAACCGGGCAGCCCAGCTGGCCCGCCGCACGGGAGCCAGAGGGCTGCTaGGTCCGGCCTGCTCTGCCG +
Preference number: 2 (lower is better)
Translates to: SLPPQQLGTGQPSWPAAREPEGC*VRPALP
Trigger: CGGCAGAGCAGGCCGGACGCAGCAGCCCTCTGGCTC...CCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCT
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR GCA 90 bp GAACCGGGCAGCCCAGCTGGCCCGCCGCACGGCGTTACCAGAGCTGCCGCAGCCGAGCCAGAGGGCTGCTaGGTCCGGCCTGCTCTGCCG +
Preference number: 2 (lower is better)
Translates to: EPGSPAGPPHGVTRAAAAEPEGC*VRPALP
Trigger: CGGCAGAGCAGGCCGGACGCAGCAGCCCTCTGGCTC...GGCTGCGGCAGCTCTGGTAACGCCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR GCA 90 bp AAGAGCATGGAGCAGAAGACCGCCCTGCGTTATCCCCCGGCTGGGCCGCGGGGCCCTGTGCGCTCCCGCTaGGCCTTGGGCCGGGATGTC +
Preference number: 2 (lower is better)
Translates to: KSMEQKTALRYPPAGPRGPVRSR*ALGRDV
Trigger: GACATCCCGGCCCAAGGCGCAGCGGGAGCGCACAGG...GCCCCGCGGCCCAGCCGGGGGATAACGCAGGGCGGTCTTCTGCTCCATGCTCTT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR CCA 90 bp AGCCTGCCTCCGCAGCAGCTGGGAACCGGGCAGCCCAGCTGGCCCGCCGCACGGAGGGTGCAGGGCCAGTaGCCTATCGAGGAGCAGGAA +
Preference number: 2 (lower is better)
Translates to: SLPPQQLGTGQPSWPAARRVQGQ*PIEEQE
Trigger: TTCCTGCTCCTCGATAGGCCACTGGCCCTGCACCCT...CCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR CCA 90 bp GAACCGGGCAGCCCAGCTGGCCCGCCGCACGGCGTTACCAGAGCTGCCGCAGCCTCCAGGCGAATAGCCTaGCCAGGCCCCATGCTGGAG +
Preference number: 2 (lower is better)
Translates to: EPGSPAGPPHGVTRAAAASRRIA*PGPMLE
Trigger: CTCCAGCATGGGGCCTGGCCAGGCTATTCGCCTGGA...GGCTGCGGCAGCTCTGGTAACGCCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR CAA 90 bp GCGGGGCACCTGTGCGCTCCCGCTGCGCCTTGGGCCGGGATGTCTTaGTTTCTTCCGTGCACAGCACTCGGCAGCCCCTGCGCCCTCAGC +
Preference number: 2 (lower is better)
Translates to: AGHLCAPAAPWAGMS*FLPCTALGSPCALS
Trigger: GCTGAGGGCGCAGGGGCTGCCGAGTGCTGTGCACGGAAGAAACAAAGACATCCCGGCCCAAGGCGCAGCGGGAGCGCACAGGTGCCCCGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR CAA 90 bp ATCCCCCGGCTGGGCCGCGGGGCACCTGTGCGCTCCCGCTGCGCCTaGGGCCGGGATGTCTTTGTTTCTTCCGTGCACAGCACTCGGCAG +
Preference number: 2 (lower is better)
Translates to: IPRLGRGAPVRSRCA*GRDVFVSSVHSTRQ
Trigger: CTGCCGAGTGCTGTGCACGGAAGAAACAAAGACATCCCGGCCCAAGGCGCAGCGGGAGCGCACAGGTGCCCCGCGGCCCAGCCGGGGGAT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR GCA 90 bp CGCGATAACAGACCGCGAAGCATCCCCGGAGGAGACCAGGAGTCCGATTGCTCCCGGCGTTACCAGAGCTaGCGCAGCCGCCTGGAGCCC +
Preference number: 2 (lower is better)
Translates to: RDNRPRSIPGGDQESDCSRRYQS*RSRLEP
Trigger: GGGCTCCAGGCGGCTGCGGCAGCTCTGGTAACGCCG...GGAGCAATCGGACTCCTGGTCTCCTCCGGGGATGCTTCGCGGTCTGTTATCGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR GCA 90 bp AAGAGCATGGAGCAGAAGACCGCCCTGCGTTATCCCCCGGCTGGGCCGCGGGGCAACCGGGAAACGGAGTaGGGGGCGGAGAAGAGAGAA +
Preference number: 2 (lower is better)
Translates to: KSMEQKTALRYPPAGPRGNRETE*GAEKRE
Trigger: TTCTCTCTTCTCCGCCCCGCACTCCGTTTCCCGGTT...GCCCCGCGGCCCAGCCGGGGGATAACGCAGGGCGGTCTTCTGCTCCATGCTCTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR GCA 90 bp GCTGGAGACCTGGGTGAGCCTCAGTCCCTTTCAAACTGTTTCGCTCCGCGTGCACTGCTGCGTCCGGCCTaGTCTGCCGGCTCGCCTCGG +
Preference number: 2 (lower is better)
Translates to: AGDLGEPQSLSNCFAPRALLRPA*SAGSPR
Trigger: CCGAGGCGAGCCGGCAGAGCAGGCCGGACGCAGCAG...TGCACGCGGAGCGAAACAGTTTGAAAGGGACTGAGGCTCACCCAGGTCTCCAGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR TCA 90 bp AGCACTCGGCAGCCCCTGCGCCCTCAGCCTGCCTCCGCAGCAGCTGGGAACCGGGCCCAAGAACCCTTCTaGACCATCAGGGTACAGAAT +
Preference number: 2 (lower is better)
Translates to: STRQPLRPQPASAAAGNRAQEPF*TIRVQN
Trigger: ATTCTGTACCCTGATGGTTCAGAAGGGTTCTTGGGC...CCGGTTCCCAGCTGCTGCGGAGGCAGGCTGAGGGCGCAGGGGCTGCCGAGTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR GCA 90 bp GCTGGAGACCTGGGTGAGCCTCAGTCCCTTTCAAACTGTTTCGCTCCGCGTGCACCTGTGCGCTCCCGCTaGGCCTTGGGCCGGGATGTC +
Preference number: 2 (lower is better)
Translates to: AGDLGEPQSLSNCFAPRAPVRSR*ALGRDV
Trigger: GACATCCCGGCCCAAGGCGCAGCGGGAGCGCACAGG...TGCACGCGGAGCGAAACAGTTTGAAAGGGACTGAGGCTCACCCAGGTCTCCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR TCA 90 bp AGGAGTCCGATTGCTCCCGGAAAGTGCTCGGCATCCTCTGCGCGGCTGGCTAATCCCCAGCCGCCATCCTaGGAATTCGCCGAGCTTCCA +
Preference number: 2 (lower is better)
Translates to: RSPIAPGKCSASSARLANPQPPS*EFAELP
Trigger: TGGAAGCTCGGCGAATTCTCAGGATGGCGGCTGGGG...ATTAGCCAGCCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAATCGGACTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR CCA 90 bp CGCGATAACAGACCGCGAAGCATCCCCGGAGGAGACCAGGAGTCCGATTGCTCCGCTCCCGCTGCGCCTTaGGCCGGGATGTCTTTGTTT +
Preference number: 2 (lower is better)
Translates to: RDNRPRSIPGGDQESDCSAPAAP*AGMSLF
Trigger: AAACAAAGACATCCCGGCCCAAGGCGCAGCGGGAGC...GGAGCAATCGGACTCCTGGTCTCCTCCGGGGATGCTTCGCGGTCTGTTATCGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR CCA 90 bp CGGCAGCCCCTGCGCCCTCAGCCTGCCTCCGCAGCAGCTGGGAACCGGGCAGCCAAGCTGGATCTTCTCTaGTTTTATTGTATCGTTACC +
Preference number: 2 (lower is better)
Translates to: RQPLRPQPASAAAGNRAAKLDLL*FYCIVT
Trigger: GGTAACGATACAATAAAACCAGAGAAGATCCAGCTT...GGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCTGAGGGCGCAGGGGCTGCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR CCA 90 bp GGCGTTAGTTGGTCCGCTTTGACCCGAGGAAGAGCATGGAGCAGAAGACCGCCCGCTCCCGCTGCGCCTTaGGCCGGGATGTCTTTGTTT +
Preference number: 2 (lower is better)
Translates to: GVSWSALTRGRAWSRRPPAPAAP*AGMSLF
Trigger: AAACAAAGACATCCCGGCCCAAGGCGCAGCGGGAGC...GGGCGGTCTTCTGCTCCATGCTCTTCCTCGGGTCAAAGCGGACCAACTAACGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR GCA 90 bp AGGAGTCCGATTGCTCCCGGAAAGTGCTCGGCATCCTCTGCGCGGCTGGCTAATAACCGGGAAACGGAGTaGGGGGCGGAGAAGAGAGAA +
Preference number: 2 (lower is better)
Translates to: RSPIAPGKCSASSARLANNRETE*GAEKRE
Trigger: TTCTCTCTTCTCCGCCCCGCACTCCGTTTCCCGGTT...ATTAGCCAGCCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAATCGGACTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR CCA 90 bp GAACCGGGCAGCCCAGCTGGCCCGCCGCACGGCGTTACCAGAGCTGCCGCAGCCAAGCTGGATCTTCTCTaGTTTTATTGTATCGTTACC +
Preference number: 2 (lower is better)
Translates to: EPGSPAGPPHGVTRAAAAKLDLL*FYCIVT
Trigger: GGTAACGATACAATAAAACCAGAGAAGATCCAGCTT...GGCTGCGGCAGCTCTGGTAACGCCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR CCA 90 bp CGCGATAACAGACCGCGAAGCATCCCCGGAGGAGACCAGGAGTCCGATTGCTCCCATCCTCTGCGCGGCTaGCTAATACCGAGGTTTAGG +
Preference number: 2 (lower is better)
Translates to: RDNRPRSIPGGDQESDCSHPLRG*LIPRFR
Trigger: CCTAAACCTCGGTATTAGCCAGCCGCGCAGAGGATG...GGAGCAATCGGACTCCTGGTCTCCTCCGGGGATGCTTCGCGGTCTGTTATCGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR TCA 90 bp AAGAGCATGGAGCAGAAGACCGCCCTGCGTTATCCCCCGGCTGGGCCGCGGGGCCATATACCCTGTTTCTaGTCAAAGAGTGGAGAAGGT +
Preference number: 2 (lower is better)
Translates to: KSMEQKTALRYPPAGPRGHIPCF*SKSGEG
Trigger: ACCTTCTCCACTCTTTGATCAGAAACAGGGTATATG...GCCCCGCGGCCCAGCCGGGGGATAACGCAGGGCGGTCTTCTGCTCCATGCTCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR TCA 90 bp TGGAGCCCCAGCCGCCATCCTGAGAATTCGCCGAGCTTCCAGGCGAATAGCCTGGCCCAAGAACCCTTCTaGACCATCAGGGTACAGAAT +
Preference number: 2 (lower is better)
Translates to: WSPSRHPENSPSFQANSLAQEPF*TIRVQN
Trigger: ATTCTGTACCCTGATGGTTCAGAAGGGTTCTTGGGC...CAGGCTATTCGCCTGGAAGCTCGGCGAATTCTCAGGATGGCGGCTGGGGCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR TCA 90 bp GCTGGAGACCTGGGTGAGCCTCAGTCCCTTTCAAACTGTTTCGCTCCGCGTGCATTAGTTGGTCCGCTTTaGCCCGAGGAAGAGCATGGA +
Preference number: 2 (lower is better)
Translates to: AGDLGEPQSLSNCFAPRALVGPL*PEEEHG
Trigger: TCCATGCTCTTCCTCGGGTCAAAGCGGACCAACTAA...TGCACGCGGAGCGAAACAGTTTGAAAGGGACTGAGGCTCACCCAGGTCTCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR GCA 90 bp CTCCGTTTGCTGGAGACCTGGGTGAGCCTCAGTCCCTTTCAAACTGTTTCGCTCGGAGAAGGTAAAGGGTaGAGGGCCAGTGGCCTATCG +
Preference number: 2 (lower is better)
Translates to: LRLLETWVSLSPFQTVSLGEGKG*RASGLS
Trigger: CGATAGGCCACTGGCCCTGCACCCTTTACCTTCTCC...GAGCGAAACAGTTTGAAAGGGACTGAGGCTCACCCAGGTCTCCAGCAAACGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR GCA 90 bp TTTCGCTCCGCGTGCAGATTTTTGGAGCAATTCTTTCCTCCTGACGCGATAACAAGCAGAAGACCGCCCTaGGTTATCCCCCGGCTGGGC +
Preference number: 2 (lower is better)
Translates to: FRSACRFLEQFFPPDAITSRRPP*VIPRLG
Trigger: GCCCAGCCGGGGGATAACGCAGGGCGGTCTTCTGCT...TGTTATCGCGTCAGGAGGAAAGAATTGCTCCAAAAATCTGCACGCGGAGCGAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR GCA 90 bp GCTGGAGACCTGGGTGAGCCTCAGTCCCTTTCAAACTGTTTCGCTCCGCGTGCAACACTTAGTCATCCTTaGACAGAGAGCCCCTGTTTC +
Preference number: 2 (lower is better)
Translates to: AGDLGEPQSLSNCFAPRATLSHP*TESPCF
Trigger: GAAACAGGGGCTCTCTGTGCAAGGATGACTAAGTGT...TGCACGCGGAGCGAAACAGTTTGAAAGGGACTGAGGCTCACCCAGGTCTCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR CCA 90 bp ACACACACGGAAAGACGTACACTTAGTCATCCTTGCACAGAGAGCCCCTGTTTCAGGGTGCAGGGCCAGTaGCCTATCGAGGAGCAGGAA +
Preference number: 2 (lower is better)
Translates to: THTERRTLSHPCTESPCFRVQGQ*PIEEQE
Trigger: TTCCTGCTCCTCGATAGGCCACTGGCCCTGCACCCT...GAAACAGGGGCTCTCTGTGCAAGGATGACTAAGTGTACGTCTTTCCGTGTGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317201.6
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR GCA 90 bp GCAGGGCCAGTGGCCTATCGAGGAGCAGGAAGAGATAAATATCGCTATGATACAAACCGGGAAACGGAGTaGGGGGCGGAGAAGAGAGAA +
Preference number: 2 (lower is better)
Translates to: AGPVAYRGAGRDKYRYDTNRETE*GAEKRE
Trigger: TTCTCTCTTCTCCGCCCCGCACTCCGTTTCCCGGTT...TGTATCATAGCGATATTTATCTCTTCCTGCTCCTCGATAGGCCACTGGCCCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000317201.6
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR GCA 90 bp AGCATACACACACGGAAAGACGTACACTTAGTCATCCTTGCACAGAGAGCCCCTGGAGAAGGTAAAGGGTaGAGGGCCAGTGGCCTATCG +
Preference number: 2 (lower is better)
Translates to: SIHTRKDVHLVILAQRAPGEGKG*RASGLS
Trigger: CGATAGGCCACTGGCCCTGCACCCTTTACCTTCTCC...AGGGGCTCTCTGTGCAAGGATGACTAAGTGTACGTCTTTCCGTGTGTGTATGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317201.6
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR GCA 90 bp TTTCGCTCCGCGTGCAGATTTTTGGAGCAATTCTTTCCTCCTGACGCGATAACATCTTTGTTTCTTCCGTaGACAGCACTCGGCAGCCCC +
Preference number: 2 (lower is better)
Translates to: FRSACRFLEQFFPPDAITSLFLP*TALGSP
Trigger: GGGGCTGCCGAGTGCTGTGCACGGAAGAAACAAAGA...TGTTATCGCGTCAGGAGGAAAGAATTGCTCCAAAAATCTGCACGCGGAGCGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR TCA 90 bp ACACACACGGAAAGACGTACACTTAGTCATCCTTGCACAGAGAGCCCCTGTTTCCATATACCCTGTTTCTaGTCAAAGAGTGGAGAAGGT +
Preference number: 2 (lower is better)
Translates to: THTERRTLSHPCTESPCFHIPCF*SKSGEG
Trigger: ACCTTCTCCACTCTTTGATCAGAAACAGGGTATATG...GAAACAGGGGCTCTCTGTGCAAGGATGACTAAGTGTACGTCTTTCCGTGTGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317201.6
ENST00000396352.8
ENST00000612286.4
3UTR CAA 90 bp GAAGAGATAAATATCGCTATGATACAGCCATTCCAGCAACCAAGATaGCTACGTCACATAAACTATAAAAACGCCTTACCAACGAGGGGG +
Preference number: 2 (lower is better)
Translates to: EEINIAMIQPFQQPR*LRHINYKNALPTRG
Trigger: CCCCCTCGTTGGTAAGGCGTTTTTATAGTTTATGTGACGTAGCAATCTTGGTTGCTGGAATGGCTGTATCATAGCGATATTTATCTCTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000317201.6
ENST00000396352.8
ENST00000612286.4
3UTR CCA 72 bp CTGCCTCCGCAGCAGCTGGGAACCGGGCAGCCCAGCTaGCCCGCCGCACGGCGTTACCAGAGCTGCCGCAGC +
Preference number: 3 (lower is better)
Translates to: LPPQQLGTGQPS*PAARRYQSCRS
Trigger: GCTGCGGCAGCTCTGGTAACGCCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR GCA 72 bp CCTGCGTTATCCCCCGGCTGGGCCGCGGGGCACCTGTaGGCTCCCGCTGCGCCTTGGGCCGGGATGTCTTTG +
Preference number: 3 (lower is better)
Translates to: PALSPGWAAGHL*APAAPWAGMSL
Trigger: CAAAGACATCCCGGCCCAAGGCGCAGCGGGAGCGCACAGGTGCCCCGCGGCCCAGCCGGGGGATAACGCAGG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR GCA 72 bp CCCCGGCTGGGCCGCGGGGCACCTGTGCGCTCCCGCTaGGCCTTGGGCCGGGATGTCTTTGTTTCTTCCGTG +
Preference number: 3 (lower is better)
Translates to: PRLGRGAPVRSR*ALGRDVFVSSV
Trigger: CACGGAAGAAACAAAGACATCCCGGCCCAAGGCGCAGCGGGAGCGCACAGGTGCCCCGCGGCCCAGCCGGGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR GCA 72 bp TTGACCCGAGGAAGAGCATGGAGCAGAAGACCGCCCTaGGTTATCCCCCGGCTGGGCCGCGGGGCACCTGTG +
Preference number: 3 (lower is better)
Translates to: LTRGRAWSRRPP*VIPRLGRGAPV
Trigger: CACAGGTGCCCCGCGGCCCAGCCGGGGGATAACGCAGGGCGGTCTTCTGCTCCATGCTCTTCCTCGGGTCAA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR GCA 72 bp CCGCGAAGCATCCCCGGAGGAGACCAGGAGTCCGATTaGTCCCGGAAAGTGCTCGGCATCCTCTGCGCGGCT +
Preference number: 3 (lower is better)
Translates to: PRSIPGGDQESD*SRKVLGILCAA
Trigger: AGCCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAATCGGACTCCTGGTCTCCTCCGGGGATGCTTCGCGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR CAA 90 bp AGACCAGGAGTCCGATTGCTCCCGGAAAGTGCTCGGCATCCTCTGCGCGGCTGGCGCTCCCGCTGCGCCTaGGGCCGGGATGTCTTTGTT +
Preference number: 3 (lower is better)
Translates to: RPGVRLLPESARHPLRGWRSRCA*GRDVFV
Trigger: AACAAAGACATCCCGGCCCAAGGCGCAGCGGGAGCG...CCAGCCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAATCGGACTCCTGGTCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR GCA 72 bp CCGGAGGAGACCAGGAGTCCGATTGCTCCCGGAAAGTaGTCGGCATCCTCTGCGCGGCTGGCTAATACCGAG +
Preference number: 3 (lower is better)
Translates to: PEETRSPIAPGK*SASSARLANTE
Trigger: CTCGGTATTAGCCAGCCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAATCGGACTCCTGGTCTCCTCCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR CAA 90 bp AGCCTGCCTCCGCAGCAGCTGGGAACCGGGCAGCCCAGCTGGCCCGCCGCACGGTACGCCAATACACAATaGAACAAAAGGCCCAAGAAC +
Preference number: 3 (lower is better)
Translates to: SLPPQQLGTGQPSWPAARYANTQ*NKRPKN
Trigger: GTTCTTGGGCCTTTTGTTCAATTGTGTATTGGCGTA...CCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR CCA 72 bp GGCGTTAGTTGGTCCGCTTTGACCCGAGGAAGAGCATaGAGCAGAAGACCGCCCTGCGTTATCCCCCGGCTG +
Preference number: 3 (lower is better)
Translates to: GVSWSALTRGRA*SRRPPCVIPRL
Trigger: CAGCCGGGGGATAACGCAGGGCGGTCTTCTGCTCCATGCTCTTCCTCGGGTCAAAGCGGACCAACTAACGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR CAA 90 bp AGGAGTCCGATTGCTCCCGGAAAGTGCTCGGCATCCTCTGCGCGGCTGGCTAATTGGGCCGGGATGTCTTaGTTTCTTCCGTGCACAGCA +
Preference number: 3 (lower is better)
Translates to: RSPIAPGKCSASSARLANWAGMS*FLPCTA
Trigger: TGCTGTGCACGGAAGAAACAAAGACATCCCGGCCCA...ATTAGCCAGCCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAATCGGACTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR CAA 90 bp AGGAGTCCGATTGCTCCCGGAAAGTGCTCGGCATCCTCTGCGCGGCTGGCTAATGTTAGTTGGTCCGCTTaGACCCGAGGAAGAGCATGG +
Preference number: 3 (lower is better)
Translates to: RSPIAPGKCSASSARLANVSWSA*TRGRAW
Trigger: CCATGCTCTTCCTCGGGTCAAAGCGGACCAACTAAC...ATTAGCCAGCCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAATCGGACTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
3UTR GCA 72 bp CATACACACACGGAAAGACGTACACTTAGTCATCCTTaGACAGAGAGCCCCTGTTTCAAAGCGCCTTTGATT +
Preference number: 3 (lower is better)
Translates to: HTHTERRTLSHP*TESPCFKAPLI
Trigger: AATCAAAGGCGCTTTGAAACAGGGGCTCTCTGTGCAAGGATGACTAAGTGTACGTCTTTCCGTGTGTGTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317201.6
ENST00000396352.8
ENST00000612286.4
3UTR-3UTR CAA 90 bp TTTCGCTCCGCGTGCAGATTTTTGGAGCAATTCTTTCCTCCTGACGCGATAACATACGCCAATACACAATaGAACAAAAGGCCCAAGAAC +
Preference number: 3 (lower is better)
Translates to: FRSACRFLEQFFPPDAITYANTQ*NKRPKN
Trigger: GTTCTTGGGCCTTTTGTTCAATTGTGTATTGGCGTA...TGTTATCGCGTCAGGAGGAAAGAATTGCTCCAAAAATCTGCACGCGGAGCGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
CDS-3UTR TCA 90 bp CGGCAGCCCCTGCGCCCTCAGCCTGCCTCCGCAGCAGCTGGGAACCGGGCAGCCGCCCCCGCGGTCACGTaGCACTCCGCCGCCAATGGC +
Preference number: 4 (lower is better)
Translates to: RQPLRPQPASAAAGNRAAAPAVT*HSAANG
Trigger: GCCATTGGCGGCGGAGTGTCACGTGACCGCGGGGGC...GGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCTGAGGGCGCAGGGGCTGCCG
77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp AGCCTGCCTCCGCAGCAGCTGGGAACCGGGCAGCCCAGCTGGCCCGCCGCACGGCGTGAGGGCGCACATTaGCACGCCCCCGCGGTCACG +
Preference number: 4 (lower is better)
Translates to: SLPPQQLGTGQPSWPAARREGAH*HAPAVT
Trigger: CGTGACCGCGGGGGCGTGCCAATGTGCGCCCTCACG...CCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCT
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp AGCCTGCCTCCGCAGCAGCTGGGAACCGGGCAGCCCAGCTGGCCCGCCGCACGGGTGGGGCGCTCAGGGTaGGCAGGCACGCCTCACTCA +
Preference number: 4 (lower is better)
Translates to: SLPPQQLGTGQPSWPAARVGRSG*AGTPHS
Trigger: TGAGTGAGGCGTGCCTGCGCACCCTGAGCGCCCCAC...CCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp CGGCAGCCCCTGCGCCCTCAGCCTGCCTCCGCAGCAGCTGGGAACCGGGCAGCCCGCTCGTGTAGGCCGTaGGCGCGCGCTTGGACGAAG +
Preference number: 4 (lower is better)
Translates to: RQPLRPQPASAAAGNRAARSCRP*ARAWTK
Trigger: CTTCGTCCAAGCGCGCGCGCACGGCCTACACGAGCG...GGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCTGAGGGCGCAGGGGCTGCCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp ACTCGGCAGCCCCTGCGCCCTCAGCCTGCCTCCGCAGCAGCTGGGAACCGGGCACCCTGCGCCCGCCCCTaGCGCCGTGTAGCGCTTCTG +
Preference number: 4 (lower is better)
Translates to: TRQPLRPQPASAAAGNRAPCARP*RRVALL
Trigger: CAGAAGCGCTACACGGCGGCAGGGGCGGGCGCAGGG...TGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCTGAGGGCGCAGGGGCTGCCGAGT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp ACTCGGCAGCCCCTGCGCCCTCAGCCTGCCTCCGCAGCAGCTGGGAACCGGGCAGCGTTATCCCCCGGCTaGGCCGCGGGGCACCTGTGC +
Preference number: 4 (lower is better)
Translates to: TRQPLRPQPASAAAGNRAALSPG*AAGHLC
Trigger: GCACAGGTGCCCCGCGGCCCAGCCGGGGGATAACGC...TGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCTGAGGGCGCAGGGGCTGCCGAGT
74% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp GAACCGGGCAGCCCAGCTGGCCCGCCGCACGGCGTTACCAGAGCTGCCGCAGCCTCAGTTCGTGTGCCTTaGGGTGGCCCCCGGCGCTGG +
Preference number: 4 (lower is better)
Translates to: EPGSPAGPPHGVTRAAAASVRVP*GGPRRW
Trigger: CCAGCGCCGGGGGCCACCCCAAGGCACACGAACTGA...GGCTGCGGCAGCTCTGGTAACGCCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp AGCACTCGGCAGCCCCTGCGCCCTCAGCCTGCCTCCGCAGCAGCTGGGAACCGGACACTCCGCCGCCAATaGCCGCCCCGCGCAGACCGT +
Preference number: 4 (lower is better)
Translates to: STRQPLRPQPASAAAGNRTLRRQ*PPRADR
Trigger: ACGGTCTGCGCGGGGCGGCCATTGGCGGCGGAGTGT...CCGGTTCCCAGCTGCTGCGGAGGCAGGCTGAGGGCGCAGGGGCTGCCGAGTGCT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp AGCCTGCCTCCGCAGCAGCTGGGAACCGGGCAGCCCAGCTGGCCCGCCGCACGGGGGCTGGCCCGGAGTTaGTCATGGGCTCCACATAGC +
Preference number: 4 (lower is better)
Translates to: SLPPQQLGTGQPSWPAARGLARS*SWAPHS
Trigger: GCTATGTGGAGCCCATGAGCAACTCCGGGCCAGCCC...CCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp AGCCTGCCTCCGCAGCAGCTGGGAACCGGGCAGCCCAGCTGGCCCGCCGCACGGTCCAGGCGAATAGCCTaGCCAGGCCCCATGCTGGAG +
Preference number: 4 (lower is better)
Translates to: SLPPQQLGTGQPSWPAARSRRIA*PGPMLE
Trigger: CTCCAGCATGGGGCCTGGCCAGGCTATTCGCCTGGA...CCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR TCA 90 bp AGCCTGCCTCCGCAGCAGCTGGGAACCGGGCAGCCCAGCTGGCCCGCCGCACGGAGCGCAGCTTTCGCCTaGGCTGGAGCTGCTGGTTTT +
Preference number: 4 (lower is better)
Translates to: SLPPQQLGTGQPSWPAARSAAFA*AGAAGF
Trigger: AAAACCAGCAGCTCCAGCTCAGGCGAAAGCTGCGCT...CCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp GAACCGGGCAGCCCAGCTGGCCCGCCGCACGGCGTTACCAGAGCTGCCGCAGCCATTGCTCCCGGAAAGTaGTCGGCATCCTCTGCGCGG +
Preference number: 4 (lower is better)
Translates to: EPGSPAGPPHGVTRAAAAIAPGK*SASSAR
Trigger: CCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAAT...GGCTGCGGCAGCTCTGGTAACGCCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp AAGAGCATGGAGCAGAAGACCGCCCTGCGTTATCCCCCGGCTGGGCCGCGGGGCCGTGTAGCGCTTCTGTaGGGGTGGCGGGGGTGCGCA +
Preference number: 4 (lower is better)
Translates to: KSMEQKTALRYPPAGPRGRVALL*GWRGCA
Trigger: TGCGCACCCCCGCCACCCCCACAGAAGCGCTACACG...GCCCCGCGGCCCAGCCGGGGGATAACGCAGGGCGGTCTTCTGCTCCATGCTCTT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp GAACCGGGCAGCCCAGCTGGCCCGCCGCACGGCGTTACCAGAGCTGCCGCAGCCGCTCCCGCTGCGCCTTaGGCCGGGATGTCTTTGTTT +
Preference number: 4 (lower is better)
Translates to: EPGSPAGPPHGVTRAAAAAPAAP*AGMSLF
Trigger: AAACAAAGACATCCCGGCCCAAGGCGCAGCGGGAGC...GGCTGCGGCAGCTCTGGTAACGCCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp GAACCGGGCAGCCCAGCTGGCCCGCCGCACGGCGTTACCAGAGCTGCCGCAGCCGGAGAAGGTAAAGGGTaGAGGGCCAGTGGCCTATCG +
Preference number: 4 (lower is better)
Translates to: EPGSPAGPPHGVTRAAAAGEGKG*RASGLS
Trigger: CGATAGGCCACTGGCCCTGCACCCTTTACCTTCTCC...GGCTGCGGCAGCTCTGGTAACGCCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp AGACCAGGAGTCCGATTGCTCCCGGAAAGTGCTCGGCATCCTCTGCGCGGCTGGGCGCTTCTGTGGGGGTaGCGGGGGTGCGCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: RPGVRLLPESARHPLRGWALLWG*RGCAAG
Trigger: CCCAGCTGCGCACCCCCGCCACCCCCACAGAAGCGC...CCAGCCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAATCGGACTCCTGGTCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp AGCCTGCCTCCGCAGCAGCTGGGAACCGGGCAGCCCAGCTGGCCCGCCGCACGGGCTTCCCTGTATGTGTaGGGTCCCATAGCTGCCGTT +
Preference number: 4 (lower is better)
Translates to: SLPPQQLGTGQPSWPAARASLYV*GPIAAV
Trigger: AACGGCAGCTATGGGACCCCACACATACAGGGAAGC...CCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp GGATGTCTTTGTTTCTTCCGTGCACAGCACTCGGCAGCCCCTGCGCCCTCAGCCCTGCTGCGTCCGGCCTaGTCTGCCGGCTCGCCTCGG +
Preference number: 4 (lower is better)
Translates to: GCLCFFRAQHSAAPAPSALLRPA*SAGSPR
Trigger: CCGAGGCGAGCCGGCAGAGCAGGCCGGACGCAGCAG...GGCTGAGGGCGCAGGGGCTGCCGAGTGCTGTGCACGGAAGAAACAAAGACATCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp CGCGATAACAGACCGCGAAGCATCCCCGGAGGAGACCAGGAGTCCGATTGCTCCGAGCAGGCGGGTCGGTaGTACTCGCCGTCGGCGCCC +
Preference number: 4 (lower is better)
Translates to: RDNRPRSIPGGDQESDCSEQAGR*YSPSAP
Trigger: GGGCGCCGACGGCGAGTACCACCGACCCGCCTGCTC...GGAGCAATCGGACTCCTGGTCTCCTCCGGGGATGCTTCGCGGTCTGTTATCGCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp GGATGTCTTTGTTTCTTCCGTGCACAGCACTCGGCAGCCCCTGCGCCCTCAGCCGCGGGGGTGCGCAGCTaGGCAGGGACGCAGGGTAGG +
Preference number: 4 (lower is better)
Translates to: GCLCFFRAQHSAAPAPSAAGVRS*AGTQGR
Trigger: CCTACCCTGCGTCCCTGCCCAGCTGCGCACCCCCGC...GGCTGAGGGCGCAGGGGCTGCCGAGTGCTGTGCACGGAAGAAACAAAGACATCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp GGATGTCTTTGTTTCTTCCGTGCACAGCACTCGGCAGCCCCTGCGCCCTCAGCCGAGCCAGAGGGCTGCTaGGTCCGGCCTGCTCTGCCG +
Preference number: 4 (lower is better)
Translates to: GCLCFFRAQHSAAPAPSAEPEGC*VRPALP
Trigger: CGGCAGAGCAGGCCGGACGCAGCAGCCCTCTGGCTC...GGCTGAGGGCGCAGGGGCTGCCGAGTGCTGTGCACGGAAGAAACAAAGACATCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp AGACCAGGAGTCCGATTGCTCCCGGAAAGTGCTCGGCATCCTCTGCGCGGCTGGCCCAGGCTTGGAGGCTaGCTAGGTGGGGCGCTCAGG +
Preference number: 4 (lower is better)
Translates to: RPGVRLLPESARHPLRGWPRLGG*LGGALR
Trigger: CCTGAGCGCCCCACCTAGCCAGCCTCCAAGCCTGGG...CCAGCCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAATCGGACTCCTGGTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
3UTR CAA 72 bp CTGTGCGCTCCCGCTGCGCCTTGGGCCGGGATGTCTTaGTTTCTTCCGTGCACAGCACTCGGCAGCCCCTGC +
Preference number: 4 (lower is better)
Translates to: LCAPAAPWAGMS*FLPCTALGSPC
Trigger: GCAGGGGCTGCCGAGTGCTGTGCACGGAAGAAACAAAGACATCCCGGCCCAAGGCGCAGCGGGAGCGCACAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000396352.8
ENST00000612286.4
CDS-3UTR TCA 90 bp GGATGTCTTTGTTTCTTCCGTGCACAGCACTCGGCAGCCCCTGCGCCCTCAGCCCGGCTCGCCTCGGCCTaGATTCCACGCAGACCCACG +
Preference number: 4 (lower is better)
Translates to: GCLCFFRAQHSAAPAPSARLASA*IPRRPT
Trigger: CGTGGGTCTGCGTGGAATTCAGGCCGAGGCGAGCCG...GGCTGAGGGCGCAGGGGCTGCCGAGTGCTGTGCACGGAAGAAACAAAGACATCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR TCA 90 bp ACTCGGCAGCCCCTGCGCCCTCAGCCTGCCTCCGCAGCAGCTGGGAACCGGGCATTAGTTGGTCCGCTTTaGCCCGAGGAAGAGCATGGA +
Preference number: 4 (lower is better)
Translates to: TRQPLRPQPASAAAGNRALVGPL*PEEEHG
Trigger: TCCATGCTCTTCCTCGGGTCAAAGCGGACCAACTAA...TGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCTGAGGGCGCAGGGGCTGCCGAGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp AGGAGTCCGATTGCTCCCGGAAAGTGCTCGGCATCCTCTGCGCGGCTGGCTAATCCTGTGCGCTCCCGCTaGGCCTTGGGCCGGGATGTC +
Preference number: 4 (lower is better)
Translates to: RSPIAPGKCSASSARLANPVRSR*ALGRDV
Trigger: GACATCCCGGCCCAAGGCGCAGCGGGAGCGCACAGG...ATTAGCCAGCCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAATCGGACTCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR TCA 90 bp CGCGATAACAGACCGCGAAGCATCCCCGGAGGAGACCAGGAGTCCGATTGCTCCCCACTGTGGGTGAGTTaGGCAGGGGGCTCTTGGCCG +
Preference number: 4 (lower is better)
Translates to: RDNRPRSIPGGDQESDCSPLWVS*AGGSWP
Trigger: CGGCCAAGAGCCCCCTGCTCAACTCACCCACAGTGG...GGAGCAATCGGACTCCTGGTCTCCTCCGGGGATGCTTCGCGGTCTGTTATCGCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR TCA 90 bp AGCCTGCCTCCGCAGCAGCTGGGAACCGGGCAGCCCAGCTGGCCCGCCGCACGGTCTGGTCTTAGTTTCTaGACTTCTGAGAGTGCTCTG +
Preference number: 4 (lower is better)
Translates to: SLPPQQLGTGQPSWPAARSGLSF*TSESAL
Trigger: CAGAGCACTCTCAGAAGTTCAGAAACTAAGACCAGA...CCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp CGCGATAACAGACCGCGAAGCATCCCCGGAGGAGACCAGGAGTCCGATTGCTCCTGGGCTCCACATAGCTaGCCCCCACGAAGACGGGGC +
Preference number: 4 (lower is better)
Translates to: RDNRPRSIPGGDQESDCSWAPHS*PPRRRG
Trigger: GCCCCGTCTTCGTGGGGGGCAGCTATGTGGAGCCCA...GGAGCAATCGGACTCCTGGTCTCCTCCGGGGATGCTTCGCGGTCTGTTATCGCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp GGATGTCTTTGTTTCTTCCGTGCACAGCACTCGGCAGCCCCTGCGCCCTCAGCCAGCAGAAGACCGCCCTaGGTTATCCCCCGGCTGGGC +
Preference number: 4 (lower is better)
Translates to: GCLCFFRAQHSAAPAPSASRRPP*VIPRLG
Trigger: GCCCAGCCGGGGGATAACGCAGGGCGGTCTTCTGCT...GGCTGAGGGCGCAGGGGCTGCCGAGTGCTGTGCACGGAAGAAACAAAGACATCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR TCA 90 bp GGATGTCTTTGTTTCTTCCGTGCACAGCACTCGGCAGCCCCTGCGCCCTCAGCCAGGGCTGGCTCAGGGTaGCTCTCCCCAGTTCAGTCC +
Preference number: 4 (lower is better)
Translates to: GCLCFFRAQHSAAPAPSARAGSG*LSPVQS
Trigger: GGACTGAACTGGGGAGAGTCACCCTGAGCCAGCCCT...GGCTGAGGGCGCAGGGGCTGCCGAGTGCTGTGCACGGAAGAAACAAAGACATCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp TGGAGCCCCAGCCGCCATCCTGAGAATTCGCCGAGCTTCCAGGCGAATAGCCTGAGCGAACCCGTTGGCTaGCTGGTAGGGGTAGCCACC +
Preference number: 4 (lower is better)
Translates to: WSPSRHPENSPSFQANSLSEPVG*LVGVAT
Trigger: GGTGGCTACCCCTACCAGGCAGCCAACGGGTTCGCT...CAGGCTATTCGCCTGGAAGCTCGGCGAATTCTCAGGATGGCGGCTGGGGCTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp AAGAGCATGGAGCAGAAGACCGCCCTGCGTTATCCCCCGGCTGGGCCGCGGGGCCGCCTGAGCTGGAGCTaGTGGTTTTCTGCTTTGTGT +
Preference number: 4 (lower is better)
Translates to: KSMEQKTALRYPPAGPRGRLSWS*WFSALC
Trigger: ACACAAAGCAGAAAACCAGCAGCTCCAGCTCAGGCG...GCCCCGCGGCCCAGCCGGGGGATAACGCAGGGCGGTCTTCTGCTCCATGCTCTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp AGACCAGGAGTCCGATTGCTCCCGGAAAGTGCTCGGCATCCTCTGCGCGGCTGGGACCAGGAGTCCGATTaGTCCCGGAAAGTGCTCGGC +
Preference number: 4 (lower is better)
Translates to: RPGVRLLPESARHPLRGWDQESD*SRKVLG
Trigger: GCCGAGCACTTTCCGGGAGCAATCGGACTCCTGGTC...CCAGCCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAATCGGACTCCTGGTCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp TGGAGCCCCAGCCGCCATCCTGAGAATTCGCCGAGCTTCCAGGCGAATAGCCTGGCCCGGAGTTGCTCATaGGCTCCACATAGCTGCCCC +
Preference number: 4 (lower is better)
Translates to: WSPSRHPENSPSFQANSLARSCS*APHSCP
Trigger: GGGGCAGCTATGTGGAGCCCATGAGCAACTCCGGGC...CAGGCTATTCGCCTGGAAGCTCGGCGAATTCTCAGGATGGCGGCTGGGGCTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp GCTGGAGACCTGGGTGAGCCTCAGTCCCTTTCAAACTGTTTCGCTCCGCGTGCACACCCCCATAGTCCATaGCGCCCGAGGCAGCGTGGG +
Preference number: 4 (lower is better)
Translates to: AGDLGEPQSLSNCFAPRAHPHSP*RPRQRG
Trigger: CCCACGCTGCCTCGGGCGCCATGGACTATGGGGGTG...TGCACGCGGAGCGAAACAGTTTGAAAGGGACTGAGGCTCACCCAGGTCTCCAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp CTCCGTTTGCTGGAGACCTGGGTGAGCCTCAGTCCCTTTCAAACTGTTTCGCTCGCGCTGGAGGGAGACTaGAGGGAGCAGGCGGGTCGG +
Preference number: 4 (lower is better)
Translates to: LRLLETWVSLSPFQTVSLALEGD*REQAGR
Trigger: CCGACCCGCCTGCTCCCTCCAGTCTCCCTCCAGCGC...GAGCGAAACAGTTTGAAAGGGACTGAGGCTCACCCAGGTCTCCAGCAAACGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp CTCCGTTTGCTGGAGACCTGGGTGAGCCTCAGTCCCTTTCAAACTGTTTCGCTCTCGTGTGCCTTGGGGTaGCCCCCGGCGCTGGAGGGA +
Preference number: 4 (lower is better)
Translates to: LRLLETWVSLSPFQTVSLSCALG*PPALEG
Trigger: TCCCTCCAGCGCCGGGGGCCACCCCAAGGCACACGA...GAGCGAAACAGTTTGAAAGGGACTGAGGCTCACCCAGGTCTCCAGCAAACGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp CGCGATAACAGACCGCGAAGCATCCCCGGAGGAGACCAGGAGTCCGATTGCTCCAGATACCGATCTCCTTaGTCTCTCCCCCTCCCCCTG +
Preference number: 4 (lower is better)
Translates to: RDNRPRSIPGGDQESDCSRYRSP*SLPLPL
Trigger: CAGGGGGAGGGGGAGAGAGCAAGGAGATCGGTATCT...GGAGCAATCGGACTCCTGGTCTCCTCCGGGGATGCTTCGCGGTCTGTTATCGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR TCA 90 bp GGATGTCTTTGTTTCTTCCGTGCACAGCACTCGGCAGCCCCTGCGCCCTCAGCCCTTGATCGCACACTCTaGCAGGGGTTTGACACCCGT +
Preference number: 4 (lower is better)
Translates to: GCLCFFRAQHSAAPAPSALDRTL*QGFDTR
Trigger: ACGGGTGTCAAACCCCTGTCAGAGTGTGCGATCAAG...GGCTGAGGGCGCAGGGGCTGCCGAGTGCTGTGCACGGAAGAAACAAAGACATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR TCA 90 bp AGACCAGGAGTCCGATTGCTCCCGGAAAGTGCTCGGCATCCTCTGCGCGGCTGGACTATCACAGGTGGGTaGGCTTGGGTGCTTCCTGAA +
Preference number: 4 (lower is better)
Translates to: RPGVRLLPESARHPLRGWTITGG*AWVLPE
Trigger: TTCAGGAAGCACCCAAGCTCACCCACCTGTGATAGT...CCAGCCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAATCGGACTCCTGGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp GGATGTCTTTGTTTCTTCCGTGCACAGCACTCGGCAGCCCCTGCGCCCTCAGCCTCTTTGTTTCTTCCGTaGACAGCACTCGGCAGCCCC +
Preference number: 4 (lower is better)
Translates to: GCLCFFRAQHSAAPAPSASLFLP*TALGSP
Trigger: GGGGCTGCCGAGTGCTGTGCACGGAAGAAACAAAGA...GGCTGAGGGCGCAGGGGCTGCCGAGTGCTGTGCACGGAAGAAACAAAGACATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp CGCGATAACAGACCGCGAAGCATCCCCGGAGGAGACCAGGAGTCCGATTGCTCCTATAAGCGAACCCGTTaGCTGCCTGGTAGGGGTAGC +
Preference number: 4 (lower is better)
Translates to: RDNRPRSIPGGDQESDCSYKRTR*LPGRGS
Trigger: GCTACCCCTACCAGGCAGCCAACGGGTTCGCTTATA...GGAGCAATCGGACTCCTGGTCTCCTCCGGGGATGCTTCGCGGTCTGTTATCGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR TCA 90 bp TGGAGCCCCAGCCGCCATCCTGAGAATTCGCCGAGCTTCCAGGCGAATAGCCTGGCAATTCTTTCCTCCTaGCGCGATAACAGACCGCGA +
Preference number: 4 (lower is better)
Translates to: WSPSRHPENSPSFQANSLAILSS*RDNRPR
Trigger: TCGCGGTCTGTTATCGCGTCAGGAGGAAAGAATTGC...CAGGCTATTCGCCTGGAAGCTCGGCGAATTCTCAGGATGGCGGCTGGGGCTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp TTTCGCTCCGCGTGCAGATTTTTGGAGCAATTCTTTCCTCCTGACGCGATAACACGCGGCAGGGGTAGGTaGAGGGGGCTGAGGTGCGGG +
Preference number: 4 (lower is better)
Translates to: FRSACRFLEQFFPPDAITRGRGR*RGLRCG
Trigger: CCCGCACCTCAGCCCCCTGCACCTACCCCTGCCGCG...TGTTATCGCGTCAGGAGGAAAGAATTGCTCCAAAAATCTGCACGCGGAGCGAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp AGGAGTCCGATTGCTCCCGGAAAGTGCTCGGCATCCTCTGCGCGGCTGGCTAATCATCCTCTGCGCGGCTaGCTAATACCGAGGTTTAGG +
Preference number: 4 (lower is better)
Translates to: RSPIAPGKCSASSARLANHPLRG*LIPRFR
Trigger: CCTAAACCTCGGTATTAGCCAGCCGCGCAGAGGATG...ATTAGCCAGCCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAATCGGACTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp TTTCGCTCCGCGTGCAGATTTTTGGAGCAATTCTTTCCTCCTGACGCGATAACACGGCGTTACCAGAGCTaGCGCAGCCGCCTGGAGCCC +
Preference number: 4 (lower is better)
Translates to: FRSACRFLEQFFPPDAITRRYQS*RSRLEP
Trigger: GGGCTCCAGGCGGCTGCGGCAGCTCTGGTAACGCCG...TGTTATCGCGTCAGGAGGAAAGAATTGCTCCAAAAATCTGCACGCGGAGCGAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp GGCGTTAGTTGGTCCGCTTTGACCCGAGGAAGAGCATGGAGCAGAAGACCGCCCAGCTTTCGCCTGAGCTaGAGCTGCTGGTTTTCTGCT +
Preference number: 4 (lower is better)
Translates to: GVSWSALTRGRAWSRRPPSFRLS*SCWFSA
Trigger: AGCAGAAAACCAGCAGCTCCAGCTCAGGCGAAAGCT...GGGCGGTCTTCTGCTCCATGCTCTTCCTCGGGTCAAAGCGGACCAACTAACGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp GCAGGGCCAGTGGCCTATCGAGGAGCAGGAAGAGATAAATATCGCTATGATACAAAGGGCGGGGGCGACTaGGGCTCATACGGGACGCTG +
Preference number: 4 (lower is better)
Translates to: AGPVAYRGAGRDKYRYDTKGGGD*GSYGTL
Trigger: CAGCGTCCCGTATGAGCCCCAGTCGCCCCCGCCCTT...TGTATCATAGCGATATTTATCTCTTCCTGCTCCTCGATAGGCCACTGGCCCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp GTGGCCTATCGAGGAGCAGGAAGAGATAAATATCGCTATGATACAGCCATTCCAACCGGGCAGCCCAGCTaGCCCGCCGCACGGCGTTAC +
Preference number: 4 (lower is better)
Translates to: VAYRGAGRDKYRYDTAIPTGQPS*PAARRY
Trigger: GTAACGCCGTGCGGCGGGCCAGCTGGGCTGCCCGGT...TGGAATGGCTGTATCATAGCGATATTTATCTCTTCCTGCTCCTCGATAGGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR TCA 90 bp AGGAGTCCGATTGCTCCCGGAAAGTGCTCGGCATCCTCTGCGCGGCTGGCTAATGTTGTTTCACGATCTTaGTCGCACACTCTGACAGGG +
Preference number: 4 (lower is better)
Translates to: RSPIAPGKCSASSARLANVVSRS*SHTLTG
Trigger: CCCTGTCAGAGTGTGCGATCAAGATCGTGAAACAAC...ATTAGCCAGCCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAATCGGACTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp CTCCGTTTGCTGGAGACCTGGGTGAGCCTCAGTCCCTTTCAAACTGTTTCGCTCGTGGGTGAGCTTGGGTaGTTCCTGAATTCTTCCCTG +
Preference number: 4 (lower is better)
Translates to: LRLLETWVSLSPFQTVSLVGELG*FLNSSL
Trigger: CAGGGAAGAATTCAGGAAGCACCCAAGCTCACCCAC...GAGCGAAACAGTTTGAAAGGGACTGAGGCTCACCCAGGTCTCCAGCAAACGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp CCTATCGAGGAGCAGGAAGAGATAAATATCGCTATGATACAGCCATTCCAGCAATGCCTCCGCAGCAGCTaGGAACCGGGCAGCCCAGCT +
Preference number: 4 (lower is better)
Translates to: PIEEQEEINIAMIQPFQQCLRSS*EPGSPA
Trigger: AGCTGGGCTGCCCGGTTCCCAGCTGCTGCGGAGGCA...TTGCTGGAATGGCTGTATCATAGCGATATTTATCTCTTCCTGCTCCTCGATAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp CCTATCGAGGAGCAGGAAGAGATAAATATCGCTATGATACAGCCATTCCAGCAACTCACTCAGTTCGTGTaGCTTGGGGTGGCCCCCGGC +
Preference number: 4 (lower is better)
Translates to: PIEEQEEINIAMIQPFQQLTQFV*LGVAPG
Trigger: GCCGGGGGCCACCCCAAGGCACACGAACTGAGTGAG...TTGCTGGAATGGCTGTATCATAGCGATATTTATCTCTTCCTGCTCCTCGATAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp GTGGCCTATCGAGGAGCAGGAAGAGATAAATATCGCTATGATACAGCCATTCCAGTGGGGTCCCATAGCTaGCGTTGCCCTGCAGGCCAT +
Preference number: 4 (lower is better)
Translates to: VAYRGAGRDKYRYDTAIPVGSHS*RCPAGH
Trigger: ATGGCCTGCAGGGCAACGGCAGCTATGGGACCCCAC...TGGAATGGCTGTATCATAGCGATATTTATCTCTTCCTGCTCCTCGATAGGCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp TTTCGCTCCGCGTGCAGATTTTTGGAGCAATTCTTTCCTCCTGACGCGATAACAAGGGTGCAGGGCCAGTaGCCTATCGAGGAGCAGGAA +
Preference number: 4 (lower is better)
Translates to: FRSACRFLEQFFPPDAITRVQGQ*PIEEQE
Trigger: TTCCTGCTCCTCGATAGGCCACTGGCCCTGCACCCT...TGTTATCGCGTCAGGAGGAAAGAATTGCTCCAAAAATCTGCACGCGGAGCGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR TCA 90 bp CCTATCGAGGAGCAGGAAGAGATAAATATCGCTATGATACAGCCATTCCAGCAACCCCAGCCGCCATCCTaGGAATTCGCCGAGCTTCCA +
Preference number: 4 (lower is better)
Translates to: PIEEQEEINIAMIQPFQQPQPPS*EFAELP
Trigger: TGGAAGCTCGGCGAATTCTCAGGATGGCGGCTGGGG...TTGCTGGAATGGCTGTATCATAGCGATATTTATCTCTTCCTGCTCCTCGATAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp GTGGCCTATCGAGGAGCAGGAAGAGATAAATATCGCTATGATACAGCCATTCCATCCCATAGCTGCCGTTaGCCTGCAGGCCATGAGCGT +
Preference number: 4 (lower is better)
Translates to: VAYRGAGRDKYRYDTAIPSHSCR*PAGHER
Trigger: ACGCTCATGGCCTGCAGGGCAACGGCAGCTATGGGA...TGGAATGGCTGTATCATAGCGATATTTATCTCTTCCTGCTCCTCGATAGGCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp TTTCGCTCCGCGTGCAGATTTTTGGAGCAATTCTTTCCTCCTGACGCGATAACAGCCCACTATCACAGGTaGGTGAGCTTGGGTGCTTCC +
Preference number: 4 (lower is better)
Translates to: FRSACRFLEQFFPPDAITAHYHR*VSLGAS
Trigger: GGAAGCACCCAAGCTCACCCACCTGTGATAGTGGGC...TGTTATCGCGTCAGGAGGAAAGAATTGCTCCAAAAATCTGCACGCGGAGCGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp CTCCGTTTGCTGGAGACCTGGGTGAGCCTCAGTCCCTTTCAAACTGTTTCGCTCACGTTAGCATGCCCTTaGCCTTCTGATCCTTTTTGT +
Preference number: 4 (lower is better)
Translates to: LRLLETWVSLSPFQTVSLTLACP*PSDPFC
Trigger: ACAAAAAGGATCAGAAGGGCAAGGGCATGCTAACGT...GAGCGAAACAGTTTGAAAGGGACTGAGGCTCACCCAGGTCTCCAGCAAACGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp CGCAGACCCACGTCTTCGGCCAAAGAACCCCTTCTTAACACGGATATTATTCAGCCGATGACGTTAGCATaGCCTTGCCCTTCTGATCCT +
Preference number: 4 (lower is better)
Translates to: RRPTSSAKEPLLNTDIIQPMTLA*PCPSDP
Trigger: AGGATCAGAAGGGCAAGGGCATGCTAACGTCATCGG...CTGAATAATATCCGTGTTAAGAAGGGGTTCTTTGGCCGAAGACGTGGGTCTGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp CCTATCGAGGAGCAGGAAGAGATAAATATCGCTATGATACAGCCATTCCAGCAAACCCGAGGAAGAGCATaGAGCAGAAGACCGCCCTGC +
Preference number: 4 (lower is better)
Translates to: PIEEQEEINIAMIQPFQQTRGRA*SRRPPC
Trigger: GCAGGGCGGTCTTCTGCTCCATGCTCTTCCTCGGGT...TTGCTGGAATGGCTGTATCATAGCGATATTTATCTCTTCCTGCTCCTCGATAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR TCA 90 bp CAGGAAGAGATAAATATCGCTATGATACAGCCATTCCAGCAACCAAGATTGCTAGCAGCGTGGGGGAGGTaGGTTAGACCAAAGAGGGCT +
Preference number: 4 (lower is better)
Translates to: QEEINIAMIQPFQQPRLLAAWGR*VRPKRA
Trigger: AGCCCTCTTTGGTCTAACTCACCTCCCCCACGCTGC...TAGCAATCTTGGTTGCTGGAATGGCTGTATCATAGCGATATTTATCTCTTCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp ACACACACGGAAAGACGTACACTTAGTCATCCTTGCACAGAGAGCCCCTGTTTCACACTTAGTCATCCTTaGACAGAGAGCCCCTGTTTC +
Preference number: 4 (lower is better)
Translates to: THTERRTLSHPCTESPCFTLSHP*TESPCF
Trigger: GAAACAGGGGCTCTCTGTGCAAGGATGACTAAGTGT...GAAACAGGGGCTCTCTGTGCAAGGATGACTAAGTGTACGTCTTTCCGTGTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp GTGGCCTATCGAGGAGCAGGAAGAGATAAATATCGCTATGATACAGCCATTCCAGGTTTAGGCGTTAGTTaGTCCGCTTTGACCCGAGGA +
Preference number: 4 (lower is better)
Translates to: VAYRGAGRDKYRYDTAIPGLGVS*SALTRG
Trigger: TCCTCGGGTCAAAGCGGACCAACTAACGCCTAAACC...TGGAATGGCTGTATCATAGCGATATTTATCTCTTCCTGCTCCTCGATAGGCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR GCA 90 bp TTTCGCTCCGCGTGCAGATTTTTGGAGCAATTCTTTCCTCCTGACGCGATAACACTGTTTCGCTCCGCGTaGAGATTTTTGGAGCAATTC +
Preference number: 4 (lower is better)
Translates to: FRSACRFLEQFFPPDAITLFRSA*RFLEQF
Trigger: GAATTGCTCCAAAAATCTGCACGCGGAGCGAAACAG...TGTTATCGCGTCAGGAGGAAAGAATTGCTCCAAAAATCTGCACGCGGAGCGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp CTCCGTTTGCTGGAGACCTGGGTGAGCCTCAGTCCCTTTCAAACTGTTTCGCTCAAGCTGGATCTTCTCTaGTTTTATTGTATCGTTACC +
Preference number: 4 (lower is better)
Translates to: LRLLETWVSLSPFQTVSLKLDLL*FYCIVT
Trigger: GGTAACGATACAATAAAACCAGAGAAGATCCAGCTT...GAGCGAAACAGTTTGAAAGGGACTGAGGCTCACCCAGGTCTCCAGCAAACGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp CCTATCGAGGAGCAGGAAGAGATAAATATCGCTATGATACAGCCATTCCAGCAAGGTACGGCTGCTGATTaGCATTATAAGCGAACCCGT +
Preference number: 4 (lower is better)
Translates to: PIEEQEEINIAMIQPFQQGTAAD*HYKRTR
Trigger: ACGGGTTCGCTTATAATGCCAATCAGCAGCCGTACC...TTGCTGGAATGGCTGTATCATAGCGATATTTATCTCTTCCTGCTCCTCGATAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CCA 90 bp CAGGAAGAGATAAATATCGCTATGATACAGCCATTCCAGCAACCAAGATTGCTACCGCGTGCAGATTTTTaGAGCAATTCTTTCCTCCTG +
Preference number: 4 (lower is better)
Translates to: QEEINIAMIQPFQQPRLLPRADF*SNSFLL
Trigger: CAGGAGGAAAGAATTGCTCCAAAAATCTGCACGCGG...TAGCAATCTTGGTTGCTGGAATGGCTGTATCATAGCGATATTTATCTCTTCCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS CCA 90 bp CCCCGGCCTGGCTTGGCGGCCCGGCCGGGTCCCCTCGGCGCGGGATaGGCACGGACCCTCAGCATCAGCCGAGATGGCAGGCGGGCTGGA +
Preference number: 5 (lower is better)
Translates to: PRPGLAARPGPLGAG*ARTLSISRDGRRAG
Trigger: TCCAGCCCGCCTGCCATCTCGGCTGATGCTGAGGGTCCGTGCCCATCCCGCGCCGAGGGGACCCGGCCGGGCCGCCAAGCCAGGCCGGGG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000522456.1
CDS CCA 90 bp GGGATGGGCACGGACCCTCAGCATCAGCCGAGATGGCAGGCGGGCTaGAGACCCCGAGGCCCGGTCACCGCCGCGCAGAGCGTGGCCGCC +
Preference number: 5 (lower is better)
Translates to: GMGTDPQHQPRWQAG*RPRGPVTAAQSVAA
Trigger: GGCGGCCACGCTCTGCGCGGCGGTGACCGGGCCTCGGGGTCTCCAGCCCGCCTGCCATCTCGGCTGATGCTGAGGGTCCGTGCCCATCCC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522456.1
CDS CCA 90 bp GCCGGGAACGGAGCGCGCCCAATCTCCAGCGGGAGCCGCCAGGCCTaGCCTGGCCGGGGCTTCCCTTCGCTCGCCATCTCCGGACAAAGC +
Preference number: 5 (lower is better)
Translates to: AGNGARPISSGSRQA*PGRGFPSLAISGQS
Trigger: GCTTTGTCCGGAGATGGCGAGCGAAGGGAAGCCCCGGCCAGGCCAGGCCTGGCGGCTCCCGCTGGAGATTGGGCGCGCTCCGTTCCCGGC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612286.5
CDS-3UTR CAA 90 bp CGGCAGCCCCTGCGCCCTCAGCCTGCCTCCGCAGCAGCTGGGAACCGGGCAGCCCGCTCCCGCTGCGCCTaGGGCCGGGATGTCTTTGTT +
Preference number: 5 (lower is better)
Translates to: RQPLRPQPASAAAGNRAARSRCA*GRDVFV
Trigger: AACAAAGACATCCCGGCCCAAGGCGCAGCGGGAGCG...GGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCTGAGGGCGCAGGGGCTGCCG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS CCA 90 bp CGTGGTGGTGGCCGCTGCCCAGCGGCCCGGCACCCCCATAGTCCATaGCGCCCGAGGCAGCGTGGGGGAGGTGAGTTAGACCAAAGAGGG +
Preference number: 5 (lower is better)
Translates to: RGGGRCPAARHPHSP*RPRQRGGGELDQRG
Trigger: CCCTCTTTGGTCTAACTCACCTCCCCCACGCTGCCTCGGGCGCCATGGACTATGGGGGTGCCGGGCCGCTGGGCAGCGGCCACCACCACG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000612286.5
CDS TCA 90 bp GTGACACTCCGCCGCCAATGGCCGCCCCGCGCAGACCTTAACTTCTaGCGAGCGCAGGCTCGGGCTCAGGCTCCGACACGGGCTCTGGCC +
Preference number: 5 (lower is better)
Translates to: VTLRRQWPPRADLNF*RAQARAQAPTRALA
Trigger: GGCCAGAGCCCGTGTCGGAGCCTGAGCCCGAGCCTGCGCTCGTCAGAAGTTAAGGTCTGCGCGGGGCGGCCATTGGCGGCGGAGTGTCAC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522456.1
CDS-3UTR CAA 90 bp AGACCAGGAGTCCGATTGCTCCCGGAAAGTGCTCGGCATCCTCTGCGCGGCTGGCTCAGTTCGTGTGCCTaGGGGTGGCCCCCGGCGCTG +
Preference number: 5 (lower is better)
Translates to: RPGVRLLPESARHPLRGWLSSCA*GWPPAL
Trigger: CAGCGCCGGGGGCCACCCCAAGGCACACGAACTGAG...CCAGCCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAATCGGACTCCTGGTCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CAA 90 bp CGGCAGCCCCTGCGCCCTCAGCCTGCCTCCGCAGCAGCTGGGAACCGGGCAGCCTCATACGGGACGCTGTaGACCAGCGAATGCATAGAG +
Preference number: 5 (lower is better)
Translates to: RQPLRPQPASAAAGNRAASYGTL*TSECIE
Trigger: CTCTATGCATTCGCTGGTCAACAGCGTCCCGTATGA...GGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCTGAGGGCGCAGGGGCTGCCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS TCA 90 bp TTTGACACCCGTGAGGGCGCACATTGGCACGCCCCCGCGGTCACGTaGCACTCCGCCGCCAATGGCCGCCCCGCGCAGACCTTAACTTCT +
Preference number: 5 (lower is better)
Translates to: FDTREGAHWHAPAVT*HSAANGRPAQTLTS
Trigger: AGAAGTTAAGGTCTGCGCGGGGCGGCCATTGGCGGCGGAGTGTCACGTGACCGCGGGGGCGTGCCAATGTGCGCCCTCACGGGTGTCAAA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000522456.1
CDS CCA 90 bp CGCCGTCGGCGCCCAAAGCGGCGGACGCCGGGTACGGCTGCTGATTaGCATTATAAGCGAACCCGTTGGCTGCCTGGTAGGGGTAGCCAC +
Preference number: 5 (lower is better)
Translates to: RRRRPKRRTPGTAAD*HYKRTRWLPGRGSH
Trigger: GTGGCTACCCCTACCAGGCAGCCAACGGGTTCGCTTATAATGCCAATCAGCAGCCGTACCCGGCGTCCGCCGCTTTGGGCGCCGACGGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000522456.1
ENST00000522788.5
ENST00000612286.5
CDS-3UTR CAA 90 bp AGCCTGCCTCCGCAGCAGCTGGGAACCGGGCAGCCCAGCTGGCCCGCCGCACGGCGTTGTTTCACGATCTaGATCGCACACTCTGACAGG +
Preference number: 5 (lower is better)
Translates to: SLPPQQLGTGQPSWPAARRCFTI*IAHSDR
Trigger: CCTGTCAGAGTGTGCGATCAAGATCGTGAAACAACG...CCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTCCCAGCTGCTGCGGAGGCAGGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CAA 90 bp AGACCAGGAGTCCGATTGCTCCCGGAAAGTGCTCGGCATCCTCTGCGCGGCTGGGGGCTCTTGGCCGCGTaGGCAGGGGTAGGGTTGTTG +
Preference number: 5 (lower is better)
Translates to: RPGVRLLPESARHPLRGWGLLAA*AGVGLL
Trigger: CAACAACCCTACCCCTGCCAACGCGGCCAAGAGCCC...CCAGCCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAATCGGACTCCTGGTCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CAA 90 bp AGCACTCGGCAGCCCCTGCGCCCTCAGCCTGCCTCCGCAGCAGCTGGGAACCGGCAGGGGAAGATTTGTTaGGCCACTGTGGGTGAGTTG +
Preference number: 5 (lower is better)
Translates to: STRQPLRPQPASAAAGNRQGKIC*ATVGEL
Trigger: CAACTCACCCACAGTGGCCAAACAAATCTTCCCCTG...CCGGTTCCCAGCTGCTGCGGAGGCAGGCTGAGGGCGCAGGGGCTGCCGAGTGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CAA 90 bp AGGAGTCCGATTGCTCCCGGAAAGTGCTCGGCATCCTCTGCGCGGCTGGCTAATTGCCCCGGCGGGCTCTaGTCGCCAGCGCAGCTTTCG +
Preference number: 5 (lower is better)
Translates to: RSPIAPGKCSASSARLANCPGGL*SPAQLS
Trigger: CGAAAGCTGCGCTGGCGACAAGAGCCCGCCGGGGCA...ATTAGCCAGCCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAATCGGACTCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS GCA 90 bp CTCGCAGAAACCCTGCGGAAAAGGCCCCAAGATCTGGTGAGGGCCTaGCAGCTCCGTCCTCCCTGCCGAGGGCTCTCTCCTGCCTTCCTT +
Preference number: 5 (lower is better)
Translates to: LAETLRKRPQDLVRA*QLRPPCRGLSPAFL
Trigger: AAGGAAGGCAGGAGAGAGCCCTCGGCAGGGAGGACGGAGCTGGCAGGCCCTCACCAGATCTTGGGGCCTTTTCCGCAGGGTTTCTGCGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000521401.1
CDS CCA 90 bp TTCCCTTCGCTCGCCATCTCCGGACAAAGCACAGCCGAGCCCGGCTaGAAGGCAGAGCTCCGAAGCAGGCAGGACGGAGCGGAGCAAAAG +
Preference number: 5 (lower is better)
Translates to: FPSLAISGQSTAEPG*KAELRSRQDGAEQK
Trigger: CTTTTGCTCCGCTCCGTCCTGCCTGCTTCGGAGCTCTGCCTTCCAGCCGGGCTCGGCTGTGCTTTGTCCGGAGATGGCGAGCGAAGGGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612286.5
CDS-3UTR CAA 90 bp GAACCGGGCAGCCCAGCTGGCCCGCCGCACGGCGTTACCAGAGCTGCCGCAGCCGCTTTTTGCATCGCGTaGTTTCACGATCTTGATCGC +
Preference number: 5 (lower is better)
Translates to: EPGSPAGPPHGVTRAAAAAFCIA*FHDLDR
Trigger: GCGATCAAGATCGTGAAACAACGCGATGCAAAAAGC...GGCTGCGGCAGCTCTGGTAACGCCGTGCGGCGGGCCAGCTGGGCTGCCCGGTTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS GCA 90 bp CTTTCCTGGTGCCAGAGGACGCAGGAAATTAGCCAGGTTGCGAGTTaGAAAGCTGCTGCCGCGGCGCCGGGAACGGAGCGCGCCCAATCT +
Preference number: 5 (lower is better)
Translates to: LSWCQRTQEISQVAS*KAAAAAPGTERAQS
Trigger: AGATTGGGCGCGCTCCGTTCCCGGCGCCGCGGCAGCAGCTTTGCAACTCGCAACCTGGCTAATTTCCTGCGTCCTCTGGCACCAGGAAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612286.5
CDS-3UTR CAA 90 bp GGATGTCTTTGTTTCTTCCGTGCACAGCACTCGGCAGCCCCTGCGCCCTCAGCCCACTCTGACAGGGGTTaGACACCCGTGAGGGCGCAC +
Preference number: 5 (lower is better)
Translates to: GCLCFFRAQHSAAPAPSAHSDRG*TPVRAH
Trigger: GTGCGCCCTCACGGGTGTCAAACCCCTGTCAGAGTG...GGCTGAGGGCGCAGGGGCTGCCGAGTGCTGTGCACGGAAGAAACAAAGACATCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS CCA 90 bp CGGACGCCGGGTACGGCTGCTGATTGGCATTATAAGCGAACCCGTTaGCTGCCTGGTAGGGGTAGCCACCGTAGATCGCCGAGCTGTCGT +
Preference number: 5 (lower is better)
Translates to: RTPGTAADWHYKRTR*LPGRGSHRRSPSCR
Trigger: ACGACAGCTCGGCGATCTACGGTGGCTACCCCTACCAGGCAGCCAACGGGTTCGCTTATAATGCCAATCAGCAGCCGTACCCGGCGTCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000522456.1
ENST00000522788.5
ENST00000612286.5
CDS-3UTR CAA 90 bp AGACCAGGAGTCCGATTGCTCCCGGAAAGTGCTCGGCATCCTCTGCGCGGCTGGTGGGCCGGGATGTCTTaGTTTCTTCCGTGCACAGCA +
Preference number: 5 (lower is better)
Translates to: RPGVRLLPESARHPLRGWWAGMS*FLPCTA
Trigger: TGCTGTGCACGGAAGAAACAAAGACATCCCGGCCCA...CCAGCCGCGCAGAGGATGCCGAGCACTTTCCGGGAGCAATCGGACTCCTGGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS GCA 90 bp CGCCGGGTACGGCTGCTGATTGGCATTATAAGCGAACCCGTTGGCTaGCTGGTAGGGGTAGCCACCGTAGATCGCCGAGCTGTCGTAGTA +
Preference number: 5 (lower is better)
Translates to: RRVRLLIGIISEPVG*LVGVATVDRRAVVV
Trigger: TACTACGACAGCTCGGCGATCTACGGTGGCTACCCCTACCAGGCAGCCAACGGGTTCGCTTATAATGCCAATCAGCAGCCGTACCCGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000522456.1
ENST00000522788.5
ENST00000612286.5
CDS-3UTR CAA 90 bp GCTGGAGACCTGGGTGAGCCTCAGTCCCTTTCAAACTGTTTCGCTCCGCGTGCAAGACCAGGAGTCCGATaGCTCCCGGAAAGTGCTCGG +
Preference number: 5 (lower is better)
Translates to: AGDLGEPQSLSNCFAPRARPGVR*LPESAR
Trigger: CCGAGCACTTTCCGGGAGCAATCGGACTCCTGGTCT...TGCACGCGGAGCGAAACAGTTTGAAAGGGACTGAGGCTCACCCAGGTCTCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS TCA 90 bp GAGACTCTCCTGGCGCGTAGCCCCAAGCCCACTATCACAGGTGGGTaGGCTTGGGTGCTTCCTGAATTCTTCCCTGAGAAGGATGGTGGC +
Preference number: 5 (lower is better)
Translates to: ETLLARSPKPTITGG*AWVLPEFFPEKDGG
Trigger: GCCACCATCCTTCTCAGGGAAGAATTCAGGAAGCACCCAAGCTCACCCACCTGTGATAGTGGGCTTGGGGCTACGCGCCAGGAGAGTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000612286.5
CDS GCA 90 bp TGGCGCGTAGCCCCAAGCCCACTATCACAGGTGGGTGAGCTTGGGTaGTTCCTGAATTCTTCCCTGAGAAGGATGGTGGCCGGTAAGGTC +
Preference number: 5 (lower is better)
Translates to: WRVAPSPLSQVGELG*FLNSSLRRMVAGKV
Trigger: GACCTTACCGGCCACCATCCTTCTCAGGGAAGAATTCAGGAAGCACCCAAGCTCACCCACCTGTGATAGTGGGCTTGGGGCTACGCGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000612286.5
CDS TCA 90 bp GTCGCTTTTTGCATCGCGTTGTTTCACGATCTTGATCGCACACTCTaGCAGGGGTTTGACACCCGTGAGGGCGCACATTGGCACGCCCCC +
Preference number: 5 (lower is better)
Translates to: VAFCIALFHDLDRTL*QGFDTREGAHWHAP
Trigger: GGGGGCGTGCCAATGTGCGCCCTCACGGGTGTCAAACCCCTGTCAGAGTGTGCGATCAAGATCGTGAAACAACGCGATGCAAAAAGCGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000522456.1
ENST00000522788.5
ENST00000612286.5
CDS GCA 90 bp GCTGTCGCTTGGGCAGCCCGAGAGAAGAATTGTCCTCTTTCCTGGTaGCAGAGGACGCAGGAAATTAGCCAGGTTGCGAGTTGCAAAGCT +
Preference number: 5 (lower is better)
Translates to: AVAWAAREKNCPLSW*QRTQEISQVASCKA
Trigger: AGCTTTGCAACTCGCAACCTGGCTAATTTCCTGCGTCCTCTGGCACCAGGAAAGAGGACAATTCTTCTCTCGGGCTGCCCAAGCGACAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612286.5
CDS-3UTR CAA 90 bp AGCATACACACACGGAAAGACGTACACTTAGTCATCCTTGCACAGAGAGCCCCTGTTAGTTGGTCCGCTTaGACCCGAGGAAGAGCATGG +
Preference number: 5 (lower is better)
Translates to: SIHTRKDVHLVILAQRAPVSWSA*TRGRAW
Trigger: CCATGCTCTTCCTCGGGTCAAAGCGGACCAACTAAC...AGGGGCTCTCTGTGCAAGGATGACTAAGTGTACGTCTTTCCGTGTGTGTATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CAA 90 bp TTTCGCTCCGCGTGCAGATTTTTGGAGCAATTCTTTCCTCCTGACGCGATAACAAAGATACCGATCTCCTaGCTCTCTCCCCCTCCCCCT +
Preference number: 5 (lower is better)
Translates to: FRSACRFLEQFFPPDAITKIPIS*LSPPPP
Trigger: AGGGGGAGGGGGAGAGAGCAAGGAGATCGGTATCTT...TGTTATCGCGTCAGGAGGAAAGAATTGCTCCAAAAATCTGCACGCGGAGCGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CAA 90 bp CAGGAAGAGATAAATATCGCTATGATACAGCCATTCCAGCAACCAAGATTGCTATTGAGCAGGGGGCTCTaGGCCGCGTTGGCAGGGGTA +
Preference number: 5 (lower is better)
Translates to: QEEINIAMIQPFQQPRLLLSRGL*AALAGV
Trigger: TACCCCTGCCAACGCGGCCAAGAGCCCCCTGCTCAA...TAGCAATCTTGGTTGCTGGAATGGCTGTATCATAGCGATATTTATCTCTTCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CAA 90 bp GTGGCCTATCGAGGAGCAGGAAGAGATAAATATCGCTATGATACAGCCATTCCAGTAGTAGGTCGCTTTTaGCATCGCGTTGTTTCACGA +
Preference number: 5 (lower is better)
Translates to: VAYRGAGRDKYRYDTAIPVVGRF*HRVVSR
Trigger: TCGTGAAACAACGCGATGCAAAAAGCGACCTACTAC...TGGAATGGCTGTATCATAGCGATATTTATCTCTTCCTGCTCCTCGATAGGCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS-3UTR CAA 90 bp AGCATACACACACGGAAAGACGTACACTTAGTCATCCTTGCACAGAGAGCCCCTTACGCCAATACACAATaGAACAAAAGGCCCAAGAAC +
Preference number: 5 (lower is better)
Translates to: SIHTRKDVHLVILAQRAPYANTQ*NKRPKN
Trigger: GTTCTTGGGCCTTTTGTTCAATTGTGTATTGGCGTA...AGGGGCTCTCTGTGCAAGGATGACTAAGTGTACGTCTTTCCGTGTGTGTATGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS CCA 72 bp GGCGGGTGCAGGGGCGGCTCTCCCAGGCTTGGAGGCTaGCTAGGTGGGGCGCTCAGGGTGCGCAGGCACGCC +
Preference number: 6 (lower is better)
Translates to: GGCRGGSPRLGG*LGGALRVRRHA
Trigger: GGCGTGCCTGCGCACCCTGAGCGCCCCACCTAGCCAGCCTCCAAGCCTGGGAGAGCCGCCCCTGCACCCGCC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000612286.5
CDS TCA 72 bp CGTGAGGGCGCACATTGGCACGCCCCCGCGGTCACGTaGCACTCCGCCGCCAATGGCCGCCCCGCGCAGACC +
Preference number: 6 (lower is better)
Translates to: REGAHWHAPAVT*HSAANGRPAQT
Trigger: GGTCTGCGCGGGGCGGCCATTGGCGGCGGAGTGTCACGTGACCGCGGGGGCGTGCCAATGTGCGCCCTCACG
75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000522456.1
ENST00000522788.5
ENST00000612286.5
CDS CCA 72 bp GGCCGCTGCCCAGCGGCCCGGCACCCCCATAGTCCATaGCGCCCGAGGCAGCGTGGGGGAGGTGAGTTAGAC +
Preference number: 6 (lower is better)
Translates to: GRCPAARHPHSP*RPRQRGGGELD
Trigger: GTCTAACTCACCTCCCCCACGCTGCCTCGGGCGCCATGGACTATGGGGGTGCCGGGCCGCTGGGCAGCGGCC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000612286.5
CDS CCA 72 bp CGCGGGATGGGCACGGACCCTCAGCATCAGCCGAGATaGCAGGCGGGCTGGAGACCCCGAGGCCCGGTCACC +
Preference number: 6 (lower is better)
Translates to: RGMGTDPQHQPR*QAGWRPRGPVT
Trigger: GGTGACCGGGCCTCGGGGTCTCCAGCCCGCCTGCCATCTCGGCTGATGCTGAGGGTCCGTGCCCATCCCGCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522456.1
CDS CCA 72 bp GGGTGCGCAGGCACGCCTCACTCAGTTCGTGTGCCTTaGGGTGGCCCCCGGCGCTGGAGGGAGACTGGAGGG +
Preference number: 6 (lower is better)
Translates to: GCAGTPHSVRVP*GGPRRWRETGG
Trigger: CCCTCCAGTCTCCCTCCAGCGCCGGGGGCCACCCCAAGGCACACGAACTGAGTGAGGCGTGCCTGCGCACCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000522788.5
ENST00000612286.5
CDS CAA 72 bp CGCGCGCGCTTGGACGAAGCCTGCCCCGGCGGGCTCTaGTCGCCAGCGCAGCTTTCGCCTGAGCTGGAGCTG +
Preference number: 6 (lower is better)
Translates to: RARLDEACPGGL*SPAQLSPELEL
Trigger: CAGCTCCAGCTCAGGCGAAAGCTGCGCTGGCGACAAGAGCCCGCCGGGGCAGGCTTCGTCCAAGCGCGCGCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000612286.5
CDS TCA 72 bp CGCCGCCAATGGCCGCCCCGCGCAGACCTTAACTTCTaGCGAGCGCAGGCTCGGGCTCAGGCTCCGACACGG +
Preference number: 6 (lower is better)
Translates to: RRQWPPRADLNF*RAQARAQAPTR
Trigger: CCGTGTCGGAGCCTGAGCCCGAGCCTGCGCTCGTCAGAAGTTAAGGTCTGCGCGGGGCGGCCATTGGCGGCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522456.1
CDS GCA 72 bp GCTCAGGGTGCGCAGGCACGCCTCACTCAGTTCGTGTaGCTTGGGGTGGCCCCCGGCGCTGGAGGGAGACTG +
Preference number: 6 (lower is better)
Translates to: AQGAQARLTQFV*LGVAPGAGGRL
Trigger: CAGTCTCCCTCCAGCGCCGGGGGCCACCCCAAGGCACACGAACTGAGTGAGGCGTGCCTGCGCACCCTGAGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000522788.5
ENST00000612286.5
CDS CCA 72 bp GCACGCCCCCGCGGTCACGTGACACTCCGCCGCCAATaGCCGCCCCGCGCAGACCGTTTCATGAGCTGTCTA +
Preference number: 6 (lower is better)
Translates to: ARPRGHVTLRRQ*PPRADRFMSCL
Trigger: TAGACAGCTCATGAAACGGTCTGCGCGGGGCGGCCATTGGCGGCGGAGTGTCACGTGACCGCGGGGGCGTGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000396352.8
CDS CCA 72 bp CTCGCCATCTCCGGACAAAGCACAGCCGAGCCCGGCTaGAAGGCAGAGCTCCGAAGCAGGCAGGACGGAGCG +
Preference number: 6 (lower is better)
Translates to: LAISGQSTAEPG*KAELRSRQDGA
Trigger: CGCTCCGTCCTGCCTGCTTCGGAGCTCTGCCTTCCAGCCGGGCTCGGCTGTGCTTTGTCCGGAGATGGCGAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612286.5
CDS GCA 72 bp GGGCTGGCCCGGAGTTGCTCATGGGCTCCACATAGCTaGCCCCCACGAAGACGGGGCTTCCCTGTATGTGTG +
Preference number: 6 (lower is better)
Translates to: GLARSCSWAPHS*PPRRRGFPVCV
Trigger: CACACATACAGGGAAGCCCCGTCTTCGTGGGGGGCAGCTATGTGGAGCCCATGAGCAACTCCGGGCCAGCCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000612286.5
CDS GCA 72 bp GGCTTCCCTGTATGTGTGGGGTCCCATAGCTGCCGTTaGCCTGCAGGCCATGAGCGTGCGGGTCATAGTCGG +
Preference number: 6 (lower is better)
Translates to: GFPVCVGSHSCR*PAGHERAGHSR
Trigger: CCGACTATGACCCGCACGCTCATGGCCTGCAGGGCAACGGCAGCTATGGGACCCCACACATACAGGGAAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000612286.5
CDS GCA 72 bp AGACGGGGCTTCCCTGTATGTGTGGGGTCCCATAGCTaGCGTTGCCCTGCAGGCCATGAGCGTGCGGGTCAT +
Preference number: 6 (lower is better)
Translates to: RRGFPVCVGSHS*RCPAGHERAGH
Trigger: ATGACCCGCACGCTCATGGCCTGCAGGGCAACGGCAGCTATGGGACCCCACACATACAGGGAAGCCCCGTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000612286.5
CDS CCA 72 bp GCACGCCCCCGCGGTCACGTGACACTCCGCCGCCAATaGCCGCCCCGCGCAGACCTAGAAAGATGTTTAAAT +
Preference number: 6 (lower is better)
Translates to: ARPRGHVTLRRQ*PPRADLERCLN
Trigger: ATTTAAACATCTTTCTAGGTCTGCGCGGGGCGGCCATTGGCGGCGGAGTGTCACGTGACCGCGGGGGCGTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000317201.7
ENST00000521401.1
ENST00000522788.5
ENST00000612286.5
CDS CCA 72 bp CGCCCAAAGCGGCGGACGCCGGGTACGGCTGCTGATTaGCATTATAAGCGAACCCGTTGGCTGCCTGGTAGG +
Preference number: 6 (lower is better)
Translates to: RPKRRTPGTAAD*HYKRTRWLPGR
Trigger: CCTACCAGGCAGCCAACGGGTTCGCTTATAATGCCAATCAGCAGCCGTACCCGGCGTCCGCCGCTTTGGGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000522456.1
ENST00000522788.5
ENST00000612286.5
CDS CAA 90 bp ATTGTCCTCTTTCCTGGTGCCAGAGGACGCAGGAAATTAGCCAGGTaGCGAGTTGCAAAGCTGCTGCCGCGGCGCCGGGAACGGAGCGCG +
Preference number: 6 (lower is better)
Translates to: IVLFPGARGRRKLAR*RVAKLLPRRRERSA
Trigger: CGCGCTCCGTTCCCGGCGCCGCGGCAGCAGCTTTGCAACTCGCAACCTGGCTAATTTCCTGCGTCCTCTGGCACCAGGAAAGAGGACAAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612286.5
CDS CAA 90 bp GCATCGCGTTGTTTCACGATCTTGATCGCACACTCTGACAGGGGTTaGACACCCGTGAGGGCGCACATTGGCACGCCCCCGCGGTCACGT +
Preference number: 6 (lower is better)
Translates to: ASRCFTILIAHSDRG*TPVRAHIGTPPRSR
Trigger: ACGTGACCGCGGGGGCGTGCCAATGTGCGCCCTCACGGGTGTCAAACCCCTGTCAGAGTGTGCGATCAAGATCGTGAAACAACGCGATGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000522456.1
ENST00000522788.5
ENST00000612286.5
CDS CAA 90 bp CAGACGGTGGCTCCCAGAAGCTCCTGCCCCTCTGACAGCTGTCGCTaGGGCAGCCCGAGAGAAGAATTGTCCTCTTTCCTGGTGCCAGAG +
Preference number: 6 (lower is better)
Translates to: QTVAPRSSCPSDSCR*GSPREELSSFLVPE
Trigger: CTCTGGCACCAGGAAAGAGGACAATTCTTCTCTCGGGCTGCCCAAGCGACAGCTGTCAGAGGGGCAGGAGCTTCTGGGAGCCACCGTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612286.5
CDS CAA 72 bp TTTCCTGGTGCCAGAGGACGCAGGAAATTAGCCAGGTaGCGAGTTGCAAAGCTGCTGCCGCGGCGCCGGGAA +
Preference number: 6 (lower is better)
Translates to: FPGARGRRKLAR*RVAKLLPRRRE
Trigger: TTCCCGGCGCCGCGGCAGCAGCTTTGCAACTCGCAACCTGGCTAATTTCCTGCGTCCTCTGGCACCAGGAAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612286.5
CDS GCA 72 bp CGGCTGCTGATTGGCATTATAAGCGAACCCGTTGGCTaGCTGGTAGGGGTAGCCACCGTAGATCGCCGAGCT +
Preference number: 6 (lower is better)
Translates to: RLLIGIISEPVG*LVGVATVDRRA
Trigger: AGCTCGGCGATCTACGGTGGCTACCCCTACCAGGCAGCCAACGGGTTCGCTTATAATGCCAATCAGCAGCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000522456.1
ENST00000522788.5
ENST00000612286.5
CDS CCA 72 bp GGTACGGCTGCTGATTGGCATTATAAGCGAACCCGTTaGCTGCCTGGTAGGGGTAGCCACCGTAGATCGCCG +
Preference number: 6 (lower is better)
Translates to: GTAADWHYKRTR*LPGRGSHRRSP
Trigger: CGGCGATCTACGGTGGCTACCCCTACCAGGCAGCCAACGGGTTCGCTTATAATGCCAATCAGCAGCCGTACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000522456.1
ENST00000522788.5
ENST00000612286.5
CDS CAA 72 bp TGTTTCACGATCTTGATCGCACACTCTGACAGGGGTTaGACACCCGTGAGGGCGCACATTGGCACGCCCCCG +
Preference number: 6 (lower is better)
Translates to: CFTILIAHSDRG*TPVRAHIGTPP
Trigger: CGGGGGCGTGCCAATGTGCGCCCTCACGGGTGTCAAACCCCTGTCAGAGTGTGCGATCAAGATCGTGAAACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000522456.1
ENST00000522788.5
ENST00000612286.5
CDS TCA 72 bp CTGGCGCGTAGCCCCAAGCCCACTATCACAGGTGGGTaGGCTTGGGTGCTTCCTGAATTCTTCCCTGAGAAG +
Preference number: 6 (lower is better)
Translates to: LARSPKPTITGG*AWVLPEFFPEK
Trigger: CTTCTCAGGGAAGAATTCAGGAAGCACCCAAGCTCACCCACCTGTGATAGTGGGCTTGGGGCTACGCGCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000612286.5
CDS CCA 72 bp GCTTGGGCAGCCCGAGAGAAGAATTGTCCTCTTTCCTaGTGCCAGAGGACGCAGGAAATTAGCCAGGTTGCG +
Preference number: 6 (lower is better)
Translates to: AWAAREKNCPLS*CQRTQEISQVA
Trigger: CGCAACCTGGCTAATTTCCTGCGTCCTCTGGCACCAGGAAAGAGGACAATTCTTCTCTCGGGCTGCCCAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612286.5
CDS TCA 72 bp TGCATCGCGTTGTTTCACGATCTTGATCGCACACTCTaGCAGGGGTTTGACACCCGTGAGGGCGCACATTGG +
Preference number: 6 (lower is better)
Translates to: CIALFHDLDRTL*QGFDTREGAHW
Trigger: CCAATGTGCGCCCTCACGGGTGTCAAACCCCTGTCAGAGTGTGCGATCAAGATCGTGAAACAACGCGATGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000522456.1
ENST00000522788.5
ENST00000612286.5
CDS TCA 72 bp GCCGCCCCGCGCAGACCTAGAAAGATGTTTAAATTCTaGACCAGGAATTGTCTCCAACTCCAGGCGCTCAGG +
Preference number: 6 (lower is better)
Translates to: AAPRRPRKMFKF*TRNCLQLQALR
Trigger: CCTGAGCGCCTGGAGTTGGAGACAATTCCTGGTTCAGAATTTAAACATCTTTCTAGGTCTGCGCGGGGCGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000317201.7
ENST00000521401.1
ENST00000522788.5
ENST00000612286.5
CDS CAA 90 bp TTGAGAACTTGTGGTTTGGACACTTCTGGACCTAAAATTGACAGTTaGAATGGCCAGGCGGCACACGTAGCCTTCAGACGGTGGCTCCCA +
Preference number: 6 (lower is better)
Translates to: LRTCGLDTSGPKIDS*NGQAAHVAFRRWLP
Trigger: TGGGAGCCACCGTCTGAAGGCTACGTGTGCCGCCTGGCCATTCAAACTGTCAATTTTAGGTCCAGAAGTGTCCAAACCACAAGTTCTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612286.5
CDS CAA 72 bp AGTAGGTCGCTTTTTGCATCGCGTTGTTTCACGATCTaGATCGCACACTCTGACAGGGGTTTGACACCCGTG +
Preference number: 6 (lower is better)
Translates to: SRSLFASRCFTI*IAHSDRGLTPV
Trigger: CACGGGTGTCAAACCCCTGTCAGAGTGTGCGATCAAGATCGTGAAACAACGCGATGCAAAAAGCGACCTACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000317201.7
ENST00000396352.8
ENST00000522456.1
ENST00000522788.5
ENST00000612286.5
CDS GCA 72 bp ATTGACAGTTTGAATGGCCAGGCGGCACACGTAGCCTaGAAAAGAGTCAAATGGAGTCCAGCGTTAGTGAGA +
Preference number: 6 (lower is better)
Translates to: IDSLNGQAAHVA*KRVKWSPALVR
Trigger: TCTCACTAACGCTGGACTCCATTTGACTCTTTTGCAGGCTACGTGTGCCGCCTGGCCATTCAAACTGTCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000521401.1
CDS CAA 72 bp GCCAAGATGCTGTGTCCTTGCCTGAGACCACATTATTaGCAAGAAGATCCCTCTCTCCTCCACAGACTTTTC +
Preference number: 6 (lower is better)
Translates to: AKMLCPCLRPHY*QEDPSLLHRLF
Trigger: GAAAAGTCTGTGGAGGAGAGAGGGATCTTCTTGCAAATAATGTGGTCTCAGGCAAGGACACAGCATCTTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317201.7
ENST00000521401.1
ENST00000612286.5
CDS CAA 90 bp TTGAGAACTTGTGGTTTGGACACTTCTGGACCTAAAATTGACAGTTaGAATGGCCAGGCGGCACACGTAGCCTGCAAAAGAGTCAAATGG +
Preference number: 6 (lower is better)
Translates to: LRTCGLDTSGPKIDS*NGQAAHVACKRVKW
Trigger: CCATTTGACTCTTTTGCAGGCTACGTGTGCCGCCTGGCCATTCAAACTGTCAATTTTAGGTCCAGAAGTGTCCAAACCACAAGTTCTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317201.7
ENST00000521401.1
ENST00000522788.5
CDS CAA 90 bp TGTCCAGGCGCTCTTAACTCGGAGGGAGCCATTTTTCAGAGAGTTTaGAGAACTTGTGGTTTGGACACTTCTGGACCTAAAATTGACAGT +
Preference number: 6 (lower is better)
Translates to: CPGALNSEGAIFQRV*RTCGLDTSGPKIDS
Trigger: ACTGTCAATTTTAGGTCCAGAAGTGTCCAAACCACAAGTTCTCAAAACTCTCTGAAAAATGGCTCCCTCCGAGTTAAGAGCGCCTGGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000522788.5
CDS CAA 72 bp GCTCTTAACTCGGAGGGAGCCATTTTTCAGAGAGTTTaGAGAACTTGTGGTTTGGACACTTCTGGACCTAAA +
Preference number: 6 (lower is better)
Translates to: ALNSEGAIFQRV*RTCGLDTSGPK
Trigger: TTTAGGTCCAGAAGTGTCCAAACCACAAGTTCTCAAAACTCTCTGAAAAATGGCTCCCTCCGAGTTAAGAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000522788.5
CDS TCA 72 bp TGCTTAACTCGGAGGGAGCCATTTTTCAGAGAGTTTTaGGAACTTGTGGTTTGGACACTTCTGGACCTAAAA +
Preference number: 6 (lower is better)
Translates to: CLTRREPFFREF*ELVVWTLLDLK
Trigger: TTTTAGGTCCAGAAGTGTCCAAACCACAAGTTCTCAAAACTCTCTGAAAAATGGCTCCCTCCGAGTTAAGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317201.7
ENST00000521401.1
ENST00000612286.5
CDS TCA 72 bp CTCTTAACTCGGAGGGAGCCATTTTTCAGAGAGTTTTaGGAACTTGTGGTTTGGACACTTCTGGACCTAAAA +
Preference number: 6 (lower is better)
Translates to: LLTRREPFFREF*ELVVWTLLDLK
Trigger: TTTTAGGTCCAGAAGTGTCCAAACCACAAGTTCTCAAAACTCTCTGAAAAATGGCTCCCTCCGAGTTAAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000522788.5
CDS CAA 72 bp TTGCTTAACTCGGAGGGAGCCATTTTTCAGAGAGTTTaGAGAACTTGTGGTTTGGACACTTCTGGACCTAAA +
Preference number: 6 (lower is better)
Translates to: LLNSEGAIFQRV*RTCGLDTSGPK
Trigger: TTTAGGTCCAGAAGTGTCCAAACCACAAGTTCTCAAAACTCTCTGAAAAATGGCTCCCTCCGAGTTAAGCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000317201.7
ENST00000521401.1
ENST00000612286.5
CDS CAA 90 bp CTTTCAGAATTGCTTAACTCGGAGGGAGCCATTTTTCAGAGAGTTTaGAGAACTTGTGGTTTGGACACTTCTGGACCTAAAATTGACAGT +
Preference number: 6 (lower is better)
Translates to: LSELLNSEGAIFQRV*RTCGLDTSGPKIDS
Trigger: ACTGTCAATTTTAGGTCCAGAAGTGTCCAAACCACAAGTTCTCAAAACTCTCTGAAAAATGGCTCCCTCCGAGTTAAGCAATTCTGAAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317201.7
ENST00000521401.1
ENST00000612286.5