Pregenerated sensors for HMGN5 (Homo sapiens)
Ensembl gene IDs: ENSG00000198157Ensembl transcript IDs: ENST00000358130.7, ENST00000373250.7, ENST00000430960.5, ENST00000436386.5, ENST00000447319.5, ENST00000451455.1, ENST00000491275.1
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTTCAGAATAGGCAAATCCATAGAGATAGAAGGCAGATTAGTGGTTaGCAAGGGATGGAGGTGGGGGATAAGTTGGGCGAAAATGGGAAG | + |
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Preference number: 1 (lower is better) Translates to: VQNRQIHRDRRQISG*QGMEVGDKLGENGK Trigger: CTTCCCATTTTCGCCCAACTTATCCCCCACCTCCATCCCTTGGCAACCACTAATCTGCCTTCTATCTCTATGGATTTGCCTATTCTGAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| 3UTR CAA 90 bp | AGAAGGCAGATTAGTGGTTGCCAAGGGATGGAGGTGGGGGATAAGTaGGGCGAAAATGGGAAGAGACTGCTAATTGGTGCTTTGTTTCTT | + |
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Preference number: 2 (lower is better) Translates to: RRQISGCQGMEVGDK*GENGKRLLIGALFL Trigger: AAGAAACAAAGCACCAATTAGCAGTCTCTTCCCATTTTCGCCCAACTTATCCCCCACCTCCATCCCTTGGCAACCACTAATCTGCCTTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| 3UTR-3UTR CCA 90 bp | GTTCAGAATAGGCAAATCCATAGAGATAGAAGGCAGATTAGTGGTTGCCAAGGGGAAGAGACTGCTAATTaGTGCTTTGTTTCTTATTTG | + |
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Preference number: 2 (lower is better) Translates to: VQNRQIHRDRRQISGCQGEETAN*CFVSYL Trigger: CAAATAAGAAACAAAGCACCAATTAGCAGTCTCTTC...CCCTTGGCAACCACTAATCTGCCTTCTATCTCTATGGATTTGCCTATTCTGAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| 3UTR CAA 90 bp | GGGCGAAAATGGGAAGAGACTGCTAATTGGTGCTTTGTTTCTTATTaGGGTGATAAAAATTCTCTGGAATTAAACAGTGGACACAACATT | + |
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Preference number: 2 (lower is better) Translates to: GRKWEETANWCFVSY*GDKNSLELNSGHNI Trigger: AATGTTGTGTCCACTGTTTAATTCCAGAGAATTTTTATCACCCAAATAAGAAACAAAGCACCAATTAGCAGTCTCTTCCCATTTTCGCCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| 3UTR GCA 72 bp | AGGCAAATCCATAGAGATAGAAGGCAGATTAGTGGTTaGCAAGGGATGGAGGTGGGGGATAAGTTGGGCGAA | + |
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Preference number: 3 (lower is better) Translates to: RQIHRDRRQISG*QGMEVGDKLGE Trigger: TTCGCCCAACTTATCCCCCACCTCCATCCCTTGGCAACCACTAATCTGCCTTCTATCTCTATGGATTTGCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| 3UTR CCA 72 bp | ATAGAGATAGAAGGCAGATTAGTGGTTGCCAAGGGATaGAGGTGGGGGATAAGTTGGGCGAAAATGGGAAGA | + |
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Preference number: 3 (lower is better) Translates to: IEIEGRLVVAKG*RWGISWAKMGR Trigger: TCTTCCCATTTTCGCCCAACTTATCCCCCACCTCCATCCCTTGGCAACCACTAATCTGCCTTCTATCTCTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR CCA 90 bp | GTGGTTGCCAAGGGATGGAGGTGGGGGATAAGTTGGGCGAAAATGGGAAGAGACCACCTCTGGTGTAACTaGCACAAGCATAGCAGACAA | + |
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Preference number: 4 (lower is better) Translates to: VVAKGWRWGISWAKMGRDHLWCN*HKHSRQ Trigger: TTGTCTGCTATGCTTGTGCCAGTTACACCAGAGGTG...GTCTCTTCCCATTTTCGCCCAACTTATCCCCCACCTCCATCCCTTGGCAACCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR CCA 90 bp | ATCCATAGAGATAGAAGGCAGATTAGTGGTTGCCAAGGGATGGAGGTGGGGGATGCCAAGGGATGGAGGTaGGGGATAAGTTGGGCGAAA | + |
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Preference number: 4 (lower is better) Translates to: IHRDRRQISGCQGMEVGDAKGWR*GISWAK Trigger: TTTCGCCCAACTTATCCCCCACCTCCATCCCTTGGC...ATCCCCCACCTCCATCCCTTGGCAACCACTAATCTGCCTTCTATCTCTATGGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR GCA 90 bp | GTGGTTGCCAAGGGATGGAGGTGGGGGATAAGTTGGGCGAAAATGGGAAGAGACCTGAGCAGGAAGTTATaGGCAGTACTTTTAGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: VVAKGWRWGISWAKMGRDLSRKL*AVLLVS Trigger: GGAGACTAAAAGTACTGCGCATAACTTCCTGCTCAG...GTCTCTTCCCATTTTCGCCCAACTTATCCCCCACCTCCATCCCTTGGCAACCAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR GCA 90 bp | GTTCAGAATAGGCAAATCCATAGAGATAGAAGGCAGATTAGTGGTTGCCAAGGGGCCGAAGGCAGTCACTaGCTGACTGCTCCAAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: VQNRQIHRDRRQISGCQGAEGSH*LTAPRA Trigger: TGCTCTTGGAGCAGTCAGGCAGTGACTGCCTTCGGC...CCCTTGGCAACCACTAATCTGCCTTCTATCTCTATGGATTTGCCTATTCTGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR GCA 90 bp | GTGGTTGCCAAGGGATGGAGGTGGGGGATAAGTTGGGCGAAAATGGGAAGAGACCTTGGTTTCAGCAACTaGTTGGGCACTTGTATCTAT | + |
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Preference number: 4 (lower is better) Translates to: VVAKGWRWGISWAKMGRDLGFSN*LGTCIY Trigger: ATAGATACAAGTGCCCAAGCAGTTGCTGAAACCAAG...GTCTCTTCCCATTTTCGCCCAACTTATCCCCCACCTCCATCCCTTGGCAACCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR GCA 90 bp | GTGGTTGCCAAGGGATGGAGGTGGGGGATAAGTTGGGCGAAAATGGGAAGAGACGTCTTCTTCAACAACTaGTTCTTGCTTGGTTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: VVAKGWRWGISWAKMGRDVFFNN*FLLGFS Trigger: GCTGAAACCAAGCAAGAAGCAGTTGTTGAAGAAGAC...GTCTCTTCCCATTTTCGCCCAACTTATCCCCCACCTCCATCCCTTGGCAACCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR CCA 90 bp | ATCCATAGAGATAGAAGGCAGATTAGTGGTTGCCAAGGGATGGAGGTGGGGGATGGCAGATCTTCTCTTTaGCTCCTGCCTCATATCACC | + |
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Preference number: 4 (lower is better) Translates to: IHRDRRQISGCQGMEVGDGRSSL*LLPHIT Trigger: GGTGATATGAGGCAGGAGCCAAAGAGAAGATCTGCC...ATCCCCCACCTCCATCCCTTGGCAACCACTAATCTGCCTTCTATCTCTATGGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR CCA 90 bp | ATCCATAGAGATAGAAGGCAGATTAGTGGTTGCCAAGGGATGGAGGTGGGGGATAGGTGGGGGATAAGTTaGGCGAAAATGGGAAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: IHRDRRQISGCQGMEVGDRWGIS*AKMGRD Trigger: GTCTCTTCCCATTTTCGCCCAACTTATCCCCCACCT...ATCCCCCACCTCCATCCCTTGGCAACCACTAATCTGCCTTCTATCTCTATGGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| 3UTR CAA 72 bp | ATTAGTGGTTGCCAAGGGATGGAGGTGGGGGATAAGTaGGGCGAAAATGGGAAGAGACTGCTAATTGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: ISGCQGMEVGDK*GENGKRLLIGA Trigger: AGCACCAATTAGCAGTCTCTTCCCATTTTCGCCCAACTTATCCCCCACCTCCATCCCTTGGCAACCACTAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR GCA 90 bp | GGCAGATTAGTGGTTGCCAAGGGATGGAGGTGGGGGATAAGTTGGGCGAAAATGTCAACAACTGCTTCTTaGTTGGTTTCAGCAACTGCT | + |
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Preference number: 4 (lower is better) Translates to: GRLVVAKGWRWGISWAKMSTTAS*LVSATA Trigger: AGCAGTTGCTGAAACCAAGCAAGAAGCAGTTGTTGA...CATTTTCGCCCAACTTATCCCCCACCTCCATCCCTTGGCAACCACTAATCTGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR TCA 90 bp | GTTCAGAATAGGCAAATCCATAGAGATAGAAGGCAGATTAGTGGTTGCCAAGGGAAGGCAGTCACTGCCTaGCTGCTCCAAGAGCAAATG | + |
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Preference number: 4 (lower is better) Translates to: VQNRQIHRDRRQISGCQGKAVTA*LLQEQM Trigger: CATTTGCTCTTGGAGCAGTCAGGCAGTGACTGCCTT...CCCTTGGCAACCACTAATCTGCCTTCTATCTCTATGGATTTGCCTATTCTGAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR CCA 90 bp | GTGGTTGCCAAGGGATGGAGGTGGGGGATAAGTTGGGCGAAAATGGGAAGAGACGAAGAGACTGCTAATTaGTGCTTTGTTTCTTATTTG | + |
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Preference number: 4 (lower is better) Translates to: VVAKGWRWGISWAKMGRDEETAN*CFVSYL Trigger: CAAATAAGAAACAAAGCACCAATTAGCAGTCTCTTC...GTCTCTTCCCATTTTCGCCCAACTTATCCCCCACCTCCATCCCTTGGCAACCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR GCA 90 bp | ATCCATAGAGATAGAAGGCAGATTAGTGGTTGCCAAGGGATGGAGGTGGGGGATTTTTTCAGAAGCTGGTaGCTCTGTAATTTTGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: IHRDRRQISGCQGMEVGDFFRSW*LCNFGF Trigger: GAAGCCAAAATTACAGAGGCACCAGCTTCTGAAAAA...ATCCCCCACCTCCATCCCTTGGCAACCACTAATCTGCCTTCTATCTCTATGGAT 46% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR CCA 90 bp | GATAAGTTGGGCGAAAATGGGAAGAGACTGCTAATTGGTGCTTTGTTTCTTATTGTGGTTGCCAAGGGATaGAGGTGGGGGATAAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: DKLGENGKRLLIGALFLIVVAKG*RWGISW Trigger: CCAACTTATCCCCCACCTCCATCCCTTGGCAACCAC...AATAAGAAACAAAGCACCAATTAGCAGTCTCTTCCCATTTTCGCCCAACTTATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR CCA 90 bp | GTTCAGAATAGGCAAATCCATAGAGATAGAAGGCAGATTAGTGGTTGCCAAGGGTTTAGGCTTCACCTCTaGTGTAACTGGCACAAGCAT | + |
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Preference number: 4 (lower is better) Translates to: VQNRQIHRDRRQISGCQGFRLHL*CNWHKH Trigger: ATGCTTGTGCCAGTTACACCAGAGGTGAAGCCTAAA...CCCTTGGCAACCACTAATCTGCCTTCTATCTCTATGGATTTGCCTATTCTGAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR CCA 90 bp | GTTCAGAATAGGCAAATCCATAGAGATAGAAGGCAGATTAGTGGTTGCCAAGGGGTTTCAGCAACTGCTTaGGCACTTGTATCTATGTTT | + |
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Preference number: 4 (lower is better) Translates to: VQNRQIHRDRRQISGCQGVSATA*ALVSMF Trigger: AAACATAGATACAAGTGCCCAAGCAGTTGCTGAAAC...CCCTTGGCAACCACTAATCTGCCTTCTATCTCTATGGATTTGCCTATTCTGAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR CCA 90 bp | GATAAGTTGGGCGAAAATGGGAAGAGACTGCTAATTGGTGCTTTGTTTCTTATTCAACTGCTTCTTGCTTaGTTTCAGCAACTGCTTGGG | + |
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Preference number: 4 (lower is better) Translates to: DKLGENGKRLLIGALFLIQLLLA*FQQLLG Trigger: CCCAAGCAGTTGCTGAAACCAAGCAAGAAGCAGTTG...AATAAGAAACAAAGCACCAATTAGCAGTCTCTTCCCATTTTCGCCCAACTTATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR TCA 90 bp | GTTCAGAATAGGCAAATCCATAGAGATAGAAGGCAGATTAGTGGTTGCCAAGGGTGCTCCAAGAGCAAATaGGTTTTCAATGAACTAACT | + |
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Preference number: 4 (lower is better) Translates to: VQNRQIHRDRRQISGCQGCSKSK*VFNELT Trigger: AGTTAGTTCATTGAAAACTCATTTGCTCTTGGAGCA...CCCTTGGCAACCACTAATCTGCCTTCTATCTCTATGGATTTGCCTATTCTGAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR TCA 90 bp | GATAAGTTGGGCGAAAATGGGAAGAGACTGCTAATTGGTGCTTTGTTTCTTATTCAAATGAGTTTTCAATaGACTAACTGCAGCACGACC | + |
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Preference number: 4 (lower is better) Translates to: DKLGENGKRLLIGALFLIQMSFQ*TNCSTT Trigger: GGTCGTGCTGCAGTTAGTTCATTGAAAACTCATTTG...AATAAGAAACAAAGCACCAATTAGCAGTCTCTTCCCATTTTCGCCCAACTTATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR GCA 90 bp | GATAAGTTGGGCGAAAATGGGAAGAGACTGCTAATTGGTGCTTTGTTTCTTATTTGTACTCTCCTAGCTTaGTCTTTCAGGATCTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: DKLGENGKRLLIGALFLICTLLA*SFRICL Trigger: AAGACAGATCCTGAAAGAGCAAGCTAGGAGAGTACA...AATAAGAAACAAAGCACCAATTAGCAGTCTCTTCCCATTTTCGCCCAACTTATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR TCA 90 bp | GAGACTGCTAATTGGTGCTTTGTTTCTTATTTGGGTGATAAAAATTCTCTGGAAATTTGCATATATTTCTaGGCAGGAAGTTATGCGCAG | + |
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Preference number: 4 (lower is better) Translates to: ETANWCFVSYLGDKNSLEICIYF*AGSYAQ Trigger: CTGCGCATAACTTCCTGCTCAGAAATATATGCAAAT...TTCCAGAGAATTTTTATCACCCAAATAAGAAACAAAGCACCAATTAGCAGTCTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR CCA 90 bp | GAGACTGCTAATTGGTGCTTTGTTTCTTATTTGGGTGATAAAAATTCTCTGGAATTCTTTTTCAGAAGCTaGTGCCTCTGTAATTTTGGC | + |
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Preference number: 4 (lower is better) Translates to: ETANWCFVSYLGDKNSLEFFFRS*CLCNFG Trigger: GCCAAAATTACAGAGGCACCAGCTTCTGAAAAAGAA...TTCCAGAGAATTTTTATCACCCAAATAAGAAACAAAGCACCAATTAGCAGTCTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR CAA 90 bp | GTGGTTGCCAAGGGATGGAGGTGGGGGATAAGTTGGGCGAAAATGGGAAGAGACCTGCCTCATATCACCTaGACCTGCAGCCTTTCTTTT | + |
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Preference number: 5 (lower is better) Translates to: VVAKGWRWGISWAKMGRDLPHIT*TCSLSF Trigger: AAAAGAAAGGCTGCAGGTCAAGGTGATATGAGGCAG...GTCTCTTCCCATTTTCGCCCAACTTATCCCCCACCTCCATCCCTTGGCAACCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS TCA 90 bp | TCAAGGGCAGGAAGCATCTGGAGACTCTTAGTTCTGAGTGAGGGGTaGGAGCATAGCAGTGTCCACTTGAGAAGGGAAAGGGATGTCATA | + |
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Preference number: 5 (lower is better) Translates to: SRAGSIWRLLVLSEG*EHSSVHLRRERDVI Trigger: TATGACATCCCTTTCCCTTCTCAAGTGGACACTGCTATGCTCTCACCCCTCACTCAGAACTAAGAGTCTCCAGATGCTTCCTGCCCTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436386.5 |
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| CDS-3UTR CAA 90 bp | ATCCATAGAGATAGAAGGCAGATTAGTGGTTGCCAAGGGATGGAGGTGGGGGATCCTGCAGCCTTTCTTTaGGGCATTGTTGTAGCTCTC | + |
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Preference number: 5 (lower is better) Translates to: IHRDRRQISGCQGMEVGDPAAFL*GIVVAL Trigger: GAGAGCTACAACAATGCCCAAAAGAAAGGCTGCAGG...ATCCCCCACCTCCATCCCTTGGCAACCACTAATCTGCCTTCTATCTCTATGGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR CAA 90 bp | ATCCATAGAGATAGAAGGCAGATTAGTGGTTGCCAAGGGATGGAGGTGGGGGATGGTTTCAGCAACTGCTaGGGCACTTGTATCTATGTT | + |
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Preference number: 5 (lower is better) Translates to: IHRDRRQISGCQGMEVGDGFSNC*GTCIYV Trigger: AACATAGATACAAGTGCCCAAGCAGTTGCTGAAACC...ATCCCCCACCTCCATCCCTTGGCAACCACTAATCTGCCTTCTATCTCTATGGAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR CAA 90 bp | ATCCATAGAGATAGAAGGCAGATTAGTGGTTGCCAAGGGATGGAGGTGGGGGATCTGCTAATTGGTGCTTaGTTTCTTATTTGGGTGATA | + |
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Preference number: 5 (lower is better) Translates to: IHRDRRQISGCQGMEVGDLLIGA*FLIWVI Trigger: TATCACCCAAATAAGAAACAAAGCACCAATTAGCAG...ATCCCCCACCTCCATCCCTTGGCAACCACTAATCTGCCTTCTATCTCTATGGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR CAA 90 bp | GTTCAGAATAGGCAAATCCATAGAGATAGAAGGCAGATTAGTGGTTGCCAAGGGCAACTGCTTGGGCACTaGTATCTATGTTTTCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: VQNRQIHRDRRQISGCQGQLLGH*YLCFLP Trigger: TGGAAGAAAACATAGATACAAGTGCCCAAGCAGTTG...CCCTTGGCAACCACTAATCTGCCTTCTATCTCTATGGATTTGCCTATTCTGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR CAA 90 bp | GAGACTGCTAATTGGTGCTTTGTTTCTTATTTGGGTGATAAAAATTCTCTGGAATGGCAGATCTTCTCTTaGGCTCCTGCCTCATATCAC | + |
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Preference number: 5 (lower is better) Translates to: ETANWCFVSYLGDKNSLEWQIFS*APASYH Trigger: GTGATATGAGGCAGGAGCCAAAGAGAAGATCTGCCA...TTCCAGAGAATTTTTATCACCCAAATAAGAAACAAAGCACCAATTAGCAGTCTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR CAA 90 bp | GATAAGTTGGGCGAAAATGGGAAGAGACTGCTAATTGGTGCTTTGTTTCTTATTTTCAACAACTGCTTCTaGCTTGGTTTCAGCAACTGC | + |
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Preference number: 5 (lower is better) Translates to: DKLGENGKRLLIGALFLIFNNCF*LGFSNC Trigger: GCAGTTGCTGAAACCAAGCAAGAAGCAGTTGTTGAA...AATAAGAAACAAAGCACCAATTAGCAGTCTCTTCCCATTTTCGCCCAACTTATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS-3UTR CAA 90 bp | GAGACTGCTAATTGGTGCTTTGTTTCTTATTTGGGTGATAAAAATTCTCTGGAACTGTACTCTCCTAGCTaGCTCTTTCAGGATCTGTCT | + |
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Preference number: 5 (lower is better) Translates to: ETANWCFVSYLGDKNSLELYSPS*LFQDLS Trigger: AGACAGATCCTGAAAGAGCAAGCTAGGAGAGTACAG...TTCCAGAGAATTTTTATCACCCAAATAAGAAACAAAGCACCAATTAGCAGTCTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000358130.7 |
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| CDS GCA 90 bp | ATTGTAGTCTTCTTCAACAACTGCTTCTTGCTTGGTTTCAGCAACTaGTTGGGCACTTGTATCTATGTTTTCTTCCATCATATCACTTTT | + |
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Preference number: 5 (lower is better) Translates to: IVVFFNNCFLLGFSN*LGTCIYVFFHHITF Trigger: AAAAGTGATATGATGGAAGAAAACATAGATACAAGTGCCCAAGCAGTTGCTGAAACCAAGCAAGAAGCAGTTGTTGAAGAAGACTACAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000358130.7 ENST00000373250.7 ENST00000430960.5 ENST00000436386.5 ENST00000447319.5 ENST00000451455.1 ENST00000491275.1 |
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| CDS TCA 72 bp | CTGCAGCACGACCTGTACTCTCCTACGATCACAAGATaGAGTCCCACATTAGGCTGTCTGCAAGCTGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: LQHDLYSPTITR*SPTLGCLQAEE Trigger: CTCCTCAGCTTGCAGACAGCCTAATGTGGGACTTCATCTTGTGATCGTAGGAGAGTACAGGTCGTGCTGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000436386.5 ENST00000451455.1 |
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| CDS TCA 72 bp | GGAAGCATCTGGAGACTCTTAGTTCTGAGTGAGGGGTaGGAGCATAGCAGTGTCCACTTGAGAAGGGAAAGG | + |
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Preference number: 6 (lower is better) Translates to: GSIWRLLVLSEG*EHSSVHLRRER Trigger: CCTTTCCCTTCTCAAGTGGACACTGCTATGCTCTCACCCCTCACTCAGAACTAAGAGTCTCCAGATGCTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436386.5 |
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| CDS TCA 72 bp | CACAAGATGAAGTCCCACATTAGGCTGTCTGCAAGCTaGGGAGCAAGAAAGCCAGTCCAAGTTCCAAAACCT | + |
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Preference number: 6 (lower is better) Translates to: HKMKSHIRLSAS*GARKPVQVPKP Trigger: AGGTTTTGGAACTTGGACTGGCTTTCTTGCTCCTCAGCTTGCAGACAGCCTAATGTGGGACTTCATCTTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000436386.5 ENST00000451455.1 |
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| CDS CAA 72 bp | GTGGTCGAAGGTCCAAGAGTCCCAAAGCTGAAGAACTaGTATTCCAATGTTCAAGGGCAGGAAGCATCTGGA | + |
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Preference number: 6 (lower is better) Translates to: VVEGPRVPKLKN*YSNVQGQEASG Trigger: TCCAGATGCTTCCTGCCCTTGAACATTGGAATACAAGTTCTTCAGCTTTGGGACTCTTGGACCTTCGACCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436386.5 |
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| CDS CAA 72 bp | AGCATTTTCATTGTAGTCTTCTTCAACAACTGCTTCTaGCTTGGTTTCAGCAACTGCTTGGGCACTTGTATC | + |
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Preference number: 6 (lower is better) Translates to: SIFIVVFFNNCF*LGFSNCLGTCI Trigger: GATACAAGTGCCCAAGCAGTTGCTGAAACCAAGCAAGAAGCAGTTGTTGAAGAAGACTACAATGAAAATGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000358130.7 ENST00000373250.7 ENST00000430960.5 ENST00000436386.5 ENST00000447319.5 ENST00000451455.1 ENST00000491275.1 |
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| CDS GCA 72 bp | TTCTTCAACAACTGCTTCTTGCTTGGTTTCAGCAACTaGTTGGGCACTTGTATCTATGTTTTCTTCCATCAT | + |
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Preference number: 6 (lower is better) Translates to: FFNNCFLLGFSN*LGTCIYVFFHH Trigger: ATGATGGAAGAAAACATAGATACAAGTGCCCAAGCAGTTGCTGAAACCAAGCAAGAAGCAGTTGTTGAAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000358130.7 ENST00000373250.7 ENST00000430960.5 ENST00000436386.5 ENST00000447319.5 ENST00000451455.1 ENST00000491275.1 |
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| CDS CAA 72 bp | CTGCTTCTTGCTTGGTTTCAGCAACTGCTTGGGCACTaGTATCTATGTTTTCTTCCATCATATCACTTTTTG | + |
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Preference number: 6 (lower is better) Translates to: LLLAWFQQLLGH*YLCFLPSYHFL Trigger: CAAAAAGTGATATGATGGAAGAAAACATAGATACAAGTGCCCAAGCAGTTGCTGAAACCAAGCAAGAAGCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 7 transcripts: ENST00000358130.7 ENST00000373250.7 ENST00000430960.5 ENST00000436386.5 ENST00000447319.5 ENST00000451455.1 ENST00000491275.1 |
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| CDS CAA 90 bp | GTAGTCTTCTTCAACAACTGCTTCTTGCTTGGTTTCAGCAACTGCTaGGGCACTTGTATCTATGTTTTCTTCCATCATATCACTTTTTGT | + |
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Preference number: 6 (lower is better) Translates to: VVFFNNCFLLGFSNC*GTCIYVFFHHITFC Trigger: ACAAAAAGTGATATGATGGAAGAAAACATAGATACAAGTGCCCAAGCAGTTGCTGAAACCAAGCAAGAAGCAGTTGTTGAAGAAGACTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 7 transcripts: ENST00000358130.7 ENST00000373250.7 ENST00000430960.5 ENST00000436386.5 ENST00000447319.5 ENST00000451455.1 ENST00000491275.1 |
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