Pregenerated sensors for HCG20 (Homo sapiens)
Ensembl gene IDs: ENSG00000228022, ENSG00000228762, ENSG00000238216Ensembl transcript IDs: ENST00000413396.5, ENST00000414837.1, ENST00000417629.5, ENST00000422944.1, ENST00000423317.5, ENST00000430862.1, ENST00000431949.5, ENST00000437173.1, ENST00000437931.5, ENST00000439406.6, ENST00000443680.1, ENST00000448592.1, ENST00000656751.1, ENST00000663861.1
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTGGGCCGGGGAATGCTGGCAGAAATCCAGATAGCTGACGTCACCTaGTCCAGATGGCGGAAGCCATTGCCCAACCATAGGAAATCGATG | + |
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Preference number: 5 (lower is better) Translates to: LGRGMLAEIQIADVT*SRWRKPLPNHRKSM Trigger: CATCGATTTCCTATGGTTGGGCAATGGCTTCCGCCATCTGGACCAGGTGACGTCAGCTATCTGGATTTCTGCCAGCATTCCCCGGCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000422944.1 ENST00000430862.1 ENST00000437173.1 ENST00000443680.1 ENST00000448592.1 ENST00000663861.1 |
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| CDS CCA 90 bp | CAAGTTTCAGCATCCAACTCTGGTGCGCGAGAGCGTATCCCCAACTaGGACTTCCGAGGCAACTTGAACTCAGAACACTACAGCGGAGAC | + |
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Preference number: 5 (lower is better) Translates to: QVSASNSGARERIPN*DFRGNLNSEHYSGD Trigger: GTCTCCGCTGTAGTGTTCTGAGTTCAAGTTGCCTCGGAAGTCCCAGTTGGGGATACGCTCTCGCGCACCAGAGTTGGATGCTGAAACTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656751.1 |
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| CDS CCA 90 bp | TCATCCTTTCAACCAAAGGAATTGGGCCTCTTCCATGCCAGACACTaGCATGGTAAACATGTCAGCCATGGTCCCTGCATTTCTGGAGCT | + |
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Preference number: 5 (lower is better) Translates to: SSFQPKELGLFHARH*HGKHVSHGPCISGA Trigger: AGCTCCAGAAATGCAGGGACCATGGCTGACATGTTTACCATGCCAGTGTCTGGCATGGAAGAGGCCCAATTCCTTTGGTTGAAAGGATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 14 transcripts: ENST00000413396.5 ENST00000414837.1 ENST00000417629.5 ENST00000422944.1 ENST00000423317.5 ENST00000430862.1 ENST00000431949.5 ENST00000437173.1 ENST00000437931.5 ENST00000439406.6 ENST00000443680.1 ENST00000448592.1 ENST00000656751.1 ENST00000663861.1 |
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| CDS CCA 90 bp | ACCCTTTATTCAGCTAGATTACTTCATCCTTTCAACCAAAGGAATTaGGCCTCTTCCATGCCAGACACTGGCATGGTAAACATGTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: TLYSARLLHPFNQRN*ASSMPDTGMVNMSA Trigger: GGCTGACATGTTTACCATGCCAGTGTCTGGCATGGAAGAGGCCCAATTCCTTTGGTTGAAAGGATGAAGTAATCTAGCTGAATAAAGGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 14 transcripts: ENST00000413396.5 ENST00000414837.1 ENST00000417629.5 ENST00000422944.1 ENST00000423317.5 ENST00000430862.1 ENST00000431949.5 ENST00000437173.1 ENST00000437931.5 ENST00000439406.6 ENST00000443680.1 ENST00000448592.1 ENST00000656751.1 ENST00000663861.1 |
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| CDS GCA 90 bp | TGTAGCTCCAATTTCCCGCAGTCACATGCCAGTTCCTTATTTCTTTaGCACCTCAAATCCAACACAACCAAAATGGATTCACTATCATGG | + |
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Preference number: 5 (lower is better) Translates to: CSSNFPQSHASSLFL*HLKSNTTKMDSLSW Trigger: CCATGATAGTGAATCCATTTTGGTTGTGTTGGATTTGAGGTGGCAAAGAAATAAGGAACTGGCATGTGACTGCGGGAAATTGGAGCTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000413396.5 ENST00000423317.5 ENST00000431949.5 ENST00000437931.5 ENST00000439406.6 |
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| CDS TCA 72 bp | CCTGGGCCGGGGAATGCTGGCAGAAATCCAGATAGCTaGCGTCACCTGGTCCAGATGGCGGAAGCCATTGCC | + |
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Preference number: 6 (lower is better) Translates to: PGPGNAGRNPDS*RHLVQMAEAIA Trigger: GGCAATGGCTTCCGCCATCTGGACCAGGTGACGTCAGCTATCTGGATTTCTGCCAGCATTCCCCGGCCCAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000422944.1 ENST00000430862.1 ENST00000437173.1 ENST00000443680.1 ENST00000448592.1 ENST00000663861.1 |
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| CDS CCA 72 bp | GGTACCTCACACGTCATTTCTGCCCGCTGGCTCCCCTaGCTCAGGGTACTGGAAAGAGTACGGGCTTTAGAA | + |
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Preference number: 6 (lower is better) Translates to: GTSHVISARWLP*LRVLERVRALE Trigger: TTCTAAAGCCCGTACTCTTTCCAGTACCCTGAGCCAGGGGAGCCAGCGGGCAGAAATGACGTGTGAGGTACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 14 transcripts: ENST00000413396.5 ENST00000414837.1 ENST00000417629.5 ENST00000422944.1 ENST00000423317.5 ENST00000430862.1 ENST00000431949.5 ENST00000437173.1 ENST00000437931.5 ENST00000439406.6 ENST00000443680.1 ENST00000448592.1 ENST00000656751.1 ENST00000663861.1 |
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| CDS CAA 72 bp | AGACGGGCTGTCCTGTTCGCTGCTATAGCCAGTATCTaGTGTAGCACCTGGCACCTGGGACCCAGGATGTCT | + |
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Preference number: 6 (lower is better) Translates to: RRAVLFAAIASI*CSTWHLGPRMS Trigger: AGACATCCTGGGTCCCAGGTGCCAGGTGCTACACAAGATACTGGCTATAGCAGCGAACAGGACAGCCCGTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000414837.1 ENST00000422944.1 ENST00000430862.1 ENST00000437173.1 ENST00000443680.1 ENST00000448592.1 |
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| CDS CCA 72 bp | GCATCCAACTCTGGTGCGCGAGAGCGTATCCCCAACTaGGACTTCCGAGGCAACTTGAACTCAGAACACTAC | + |
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Preference number: 6 (lower is better) Translates to: ASNSGARERIPN*DFRGNLNSEHY Trigger: GTAGTGTTCTGAGTTCAAGTTGCCTCGGAAGTCCCAGTTGGGGATACGCTCTCGCGCACCAGAGTTGGATGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656751.1 |
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| CDS CCA 72 bp | GCAGAAATCCAGATAGCTGACGTCACCTGGTCCAGATaGCGGAAGCCATTGCCCAACCATAGGAAATCGATG | + |
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Preference number: 6 (lower is better) Translates to: AEIQIADVTWSR*RKPLPNHRKSM Trigger: CATCGATTTCCTATGGTTGGGCAATGGCTTCCGCCATCTGGACCAGGTGACGTCAGCTATCTGGATTTCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000422944.1 ENST00000430862.1 ENST00000437173.1 ENST00000443680.1 ENST00000448592.1 ENST00000663861.1 |
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| CDS CCA 72 bp | CAACCAAAGGAATTGGGCCTCTTCCATGCCAGACACTaGCATGGTAAACATGTCAGCCATGGTCCCTGCATT | + |
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Preference number: 6 (lower is better) Translates to: QPKELGLFHARH*HGKHVSHGPCI Trigger: AATGCAGGGACCATGGCTGACATGTTTACCATGCCAGTGTCTGGCATGGAAGAGGCCCAATTCCTTTGGTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 14 transcripts: ENST00000413396.5 ENST00000414837.1 ENST00000417629.5 ENST00000422944.1 ENST00000423317.5 ENST00000430862.1 ENST00000431949.5 ENST00000437173.1 ENST00000437931.5 ENST00000439406.6 ENST00000443680.1 ENST00000448592.1 ENST00000656751.1 ENST00000663861.1 |
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| CDS CAA 72 bp | ATAGCTGACGTCACCTGGTCCAGATGGCGGAAGCCATaGCCCAACCATAGGAAATCGATGCCAACAACACAT | + |
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Preference number: 6 (lower is better) Translates to: IADVTWSRWRKP*PNHRKSMPTTH Trigger: ATGTGTTGTTGGCATCGATTTCCTATGGTTGGGCAATGGCTTCCGCCATCTGGACCAGGTGACGTCAGCTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000422944.1 ENST00000430862.1 ENST00000437173.1 ENST00000443680.1 ENST00000448592.1 ENST00000663861.1 |
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| CDS CAA 90 bp | GAAATCCAGATAGCTGACGTCACCTGGTCCAGATGGCGGAAGCCATaGCCCAACCATAGGAAATCGATGCCAACAACACATTTCTCTATG | + |
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Preference number: 6 (lower is better) Translates to: EIQIADVTWSRWRKP*PNHRKSMPTTHFSM Trigger: CATAGAGAAATGTGTTGTTGGCATCGATTTCCTATGGTTGGGCAATGGCTTCCGCCATCTGGACCAGGTGACGTCAGCTATCTGGATTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000422944.1 ENST00000430862.1 ENST00000437173.1 ENST00000443680.1 ENST00000448592.1 ENST00000663861.1 |
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| CDS CCA 72 bp | TCAGCTAGATTACTTCATCCTTTCAACCAAAGGAATTaGGCCTCTTCCATGCCAGACACTGGCATGGTAAAC | + |
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Preference number: 6 (lower is better) Translates to: SARLLHPFNQRN*ASSMPDTGMVN Trigger: GTTTACCATGCCAGTGTCTGGCATGGAAGAGGCCCAATTCCTTTGGTTGAAAGGATGAAGTAATCTAGCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 14 transcripts: ENST00000413396.5 ENST00000414837.1 ENST00000417629.5 ENST00000422944.1 ENST00000423317.5 ENST00000430862.1 ENST00000431949.5 ENST00000437173.1 ENST00000437931.5 ENST00000439406.6 ENST00000443680.1 ENST00000448592.1 ENST00000656751.1 ENST00000663861.1 |
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| CDS GCA 72 bp | AATTTCCCGCAGTCACATGCCAGTTCCTTATTTCTTTaGCACCTCAAATCCAACACAACCAAAATGGATTCA | + |
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Preference number: 6 (lower is better) Translates to: NFPQSHASSLFL*HLKSNTTKMDS Trigger: TGAATCCATTTTGGTTGTGTTGGATTTGAGGTGGCAAAGAAATAAGGAACTGGCATGTGACTGCGGGAAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000413396.5 ENST00000423317.5 ENST00000431949.5 ENST00000437931.5 ENST00000439406.6 |
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| CDS CAA 90 bp | TTCCCCAGGTATGTCTTAAACGATACCTTCTTTAGTAGGCATTCCTaGTCACCCCAGACTAAATTAGATGACCTCATTATACAGTACCAT | + |
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Preference number: 6 (lower is better) Translates to: FPRYVLNDTFFSRHS*SPQTKLDDLIIQYH Trigger: ATGGTACTGTATAATGAGGTCATCTAATTTAGTCTGGGGTGACAAGGAATGCCTACTAAAGAAGGTATCGTTTAAGACATACCTGGGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 14 transcripts: ENST00000413396.5 ENST00000414837.1 ENST00000417629.5 ENST00000422944.1 ENST00000423317.5 ENST00000430862.1 ENST00000431949.5 ENST00000437173.1 ENST00000437931.5 ENST00000439406.6 ENST00000443680.1 ENST00000448592.1 ENST00000656751.1 ENST00000663861.1 |
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| CDS CAA 72 bp | TATGTCTTAAACGATACCTTCTTTAGTAGGCATTCCTaGTCACCCCAGACTAAATTAGATGACCTCATTATA | + |
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Preference number: 6 (lower is better) Translates to: YVLNDTFFSRHS*SPQTKLDDLII Trigger: TATAATGAGGTCATCTAATTTAGTCTGGGGTGACAAGGAATGCCTACTAAAGAAGGTATCGTTTAAGACATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 14 transcripts: ENST00000413396.5 ENST00000414837.1 ENST00000417629.5 ENST00000422944.1 ENST00000423317.5 ENST00000430862.1 ENST00000431949.5 ENST00000437173.1 ENST00000437931.5 ENST00000439406.6 ENST00000443680.1 ENST00000448592.1 ENST00000656751.1 ENST00000663861.1 |
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