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Pregenerated sensors for H4C2 (Homo sapiens)

Ensembl gene IDs: ENSG00000278705

Ensembl transcript IDs: ENST00000377745.3, ENST00000377745.4

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp AATAGCCGAGTAAAGCCATTGAGATGTTACCATCCGAAAGAATACAATCACAGCCTTTCTGAGAGGGAGTaGGCGGCCCTGAAAAGGGCC +
Preference number: 2 (lower is better)
Translates to: NSRVKPLRCYHPKEYNHSLSERE*AALKRA
Trigger: GGCCCTTTTCAGGGCCGCCCACTCCCTCTCAGAAAG...GCTGTGATTGTATTCTTTCGGATGGTAACATCTCAATGGCTTTACTCGGCTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377745.3
CDS CCA 90 bp CTCAGCAGGACGCCAAGCTCAACTAGAAATGGAAGTAAAGGCTTCTaGCGCTACCGGCAGGGGGCGGTTAAGGACGGCAGGTGTTACCAG +
Preference number: 5 (lower is better)
Translates to: LSRTPSSTRNGSKGF*RYRQGAVKDGRCYQ
Trigger: CTGGTAACACCTGCCGTCCTTAACCGCCCCCTGCCGGTAGCGCCAGAAGCCTTTACTTCCATTTCTAGTTGAGCTTGGCGTCCTGCTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000377745.4
CDS GCA 90 bp AGTCATCTGAGAATCTTACATCAGAGGGGGCTTCCATCTTATAGCTaGTGCCACGGACCTCGGAGTCAGAAGAAATTTGAGTCCTTATTT +
Preference number: 5 (lower is better)
Translates to: SHLRILHQRGLPSYS*CHGPRSQKKFESLF
Trigger: AAATAAGGACTCAAATTTCTTCTGACTCCGAGGTCCGTGGCAGCAGCTATAAGATGGAAGCCCCCTCTGATGTAAGATTCTCAGATGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000377745.4
CDS CCA 90 bp AATCAGTTTTGGAATTTACAATTTAAGGCAGGAATAGAAGACTATTaGGTTGACAGGTACAGTGAAGATGCAAGTCATCTGAGAATCTTA +
Preference number: 5 (lower is better)
Translates to: NQFWNLQFKAGIEDY*VDRYSEDASHLRIL
Trigger: TAAGATTCTCAGATGACTTGCATCTTCACTGTACCTGTCAACCCAATAGTCTTCTATTCCTGCCTTAAATTGTAAATTCCAAAACTGATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377745.4
CDS CCA 72 bp ACGCCAAGCTCAACTAGAAATGGAAGTAAAGGCTTCTaGCGCTACCGGCAGGGGGCGGTTAAGGACGGCAGG +
Preference number: 6 (lower is better)
Translates to: TPSSTRNGSKGF*RYRQGAVKDGR
Trigger: CCTGCCGTCCTTAACCGCCCCCTGCCGGTAGCGCCAGAAGCCTTTACTTCCATTTCTAGTTGAGCTTGGCGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000377745.4
CDS GCA 72 bp ATCTTACATCAGAGGGGGCTTCCATCTTATAGCTGCTaGCACGGACCTCGGAGTCAGAAGAAATTTGAGTCC +
Preference number: 6 (lower is better)
Translates to: ILHQRGLPSYSC*HGPRSQKKFES
Trigger: GGACTCAAATTTCTTCTGACTCCGAGGTCCGTGGCAGCAGCTATAAGATGGAAGCCCCCTCTGATGTAAGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000377745.4
CDS GCA 72 bp AGAATCTTACATCAGAGGGGGCTTCCATCTTATAGCTaGTGCCACGGACCTCGGAGTCAGAAGAAATTTGAG +
Preference number: 6 (lower is better)
Translates to: RILHQRGLPSYS*CHGPRSQKKFE
Trigger: CTCAAATTTCTTCTGACTCCGAGGTCCGTGGCAGCAGCTATAAGATGGAAGCCCCCTCTGATGTAAGATTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000377745.4
CDS CAA 72 bp CGGCAGGTGTTACCAGGGAAGCTAAAAGTACAGCTTTaGCTGACGTTAAGTCAGATACGCCTGGGAAAACAG +
Preference number: 6 (lower is better)
Translates to: RQVLPGKLKVQL*LTLSQIRLGKQ
Trigger: CTGTTTTCCCAGGCGTATCTGACTTAACGTCAGCAAAAGCTGTACTTTTAGCTTCCCTGGTAACACCTGCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000377745.4
CDS GCA 72 bp ACTTATCTCGGAGACCTCGTTTACTTAGCTGATTTCTaGTTTAGCAGCCACTCAGACCAAACAACCTGGTCT +
Preference number: 6 (lower is better)
Translates to: TYLGDLVYLADF*FSSHSDQTTWS
Trigger: AGACCAGGTTGTTTGGTCTGAGTGGCTGCTAAAGCAGAAATCAGCTAAGTAAACGAGGTCTCCGAGATAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377745.4
CDS CCA 72 bp CAGCCACTCAGACCAAACAACCTGGTCTCTCCCAACTaGTTTATAATAGTTCTACATACTAGGCAGAATAGC +
Preference number: 6 (lower is better)
Translates to: QPLRPNNLVSPN*FIIVLHTRQNS
Trigger: GCTATTCTGCCTAGTATGTAGAACTATTATAAACCAGTTGGGAGAGACCAGGTTGTTTGGTCTGAGTGGCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377745.4
CDS TCA 72 bp ATTGGGTTGACAGGTACAGTGAAGATGCAAGTCATCTaGGAATCTTACATCAGAGGGGGCTTCCATCTTATA +
Preference number: 6 (lower is better)
Translates to: IGLTGTVKMQVI*ESYIRGGFHLI
Trigger: TATAAGATGGAAGCCCCCTCTGATGTAAGATTCTCAGATGACTTGCATCTTCACTGTACCTGTCAACCCAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000377745.4
CDS CAA 72 bp GTTCTACATACTAGGCAGAATAGCCGAGTAAAGCCATaGAGATGTTACCATCCGAAAGAATACAATCACAGC +
Preference number: 6 (lower is better)
Translates to: VLHTRQNSRVKP*RCYHPKEYNHS
Trigger: GCTGTGATTGTATTCTTTCGGATGGTAACATCTCAATGGCTTTACTCGGCTATTCTGCCTAGTATGTAGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377745.4
CDS CCA 72 bp TGGAATTTACAATTTAAGGCAGGAATAGAAGACTATTaGGTTGACAGGTACAGTGAAGATGCAAGTCATCTG +
Preference number: 6 (lower is better)
Translates to: WNLQFKAGIEDY*VDRYSEDASHL
Trigger: CAGATGACTTGCATCTTCACTGTACCTGTCAACCCAATAGTCTTCTATTCCTGCCTTAAATTGTAAATTCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000377745.4