Pregenerated sensors for H3-3A (Homo sapiens)
Ensembl gene IDs: ENSG00000163041Ensembl transcript IDs: ENST00000366814.3, ENST00000366816.5, ENST00000661429.1
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAGTGGCAATCCCTAATCCCCTTTAGGAAACCACAAGGCAAATCCTaGCCCCTTTACACGTCCAGTATCACCTTTAAGCACCGTTCCCCC | + |
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Preference number: 1 (lower is better) Translates to: KWQSLIPFRKPQGKS*PLYTSSITFKHRSP Trigger: GGGGGAACGGTGCTTAAAGGTGATACTGGACGTGTAAAGGGGCCAGGATTTGCCTTGTGGTTTCCTAAAGGGGATTAGGGATTGCCACTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| 3UTR CAA 90 bp | CCCTTTACACGTCCAGTATCACCTTTAAGCACCGTTCCCCCAATCTaGCCAATCCAATCCTATCCTCCACTCACTGCTCCTTTTACGTCT | + |
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Preference number: 2 (lower is better) Translates to: PFTRPVSPLSTVPPI*PIQSYPPLTAPFTS Trigger: AGACGTAAAAGGAGCAGTGAGTGGAGGATAGGATTGGATTGGCAAGATTGGGGGAACGGTGCTTAAAGGTGATACTGGACGTGTAAAGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| 3UTR-3UTR TCA 90 bp | AAATTTCAGCAACTCACTGAGAATTTAATGGATGCCTACTCCTGGAATTCACCATCCCCACCCCCAGAATaGTTCAGGTCTGCAATGGTG | + |
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Preference number: 2 (lower is better) Translates to: KFQQLTENLMDAYSWNSPSPPPE*FRSAMV Trigger: CACCATTGCAGACCTGAATCATTCTGGGGGTGGGGA...TGGTGAATTCCAGGAGTAGGCATCCATTAAATTCTCAGTGAGTTGCTGAAATTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| 3UTR-3UTR GCA 90 bp | CAATCCCTAATCCCCTTTAGGAAACCACAAGGCAAATCCTGGCCCCTTTACACGTGGTATAATGGAATGTaGACTAAGCCTTGGAGTCAA | + |
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Preference number: 2 (lower is better) Translates to: QSLIPFRKPQGKSWPLYTWYNGM*TKPWSQ Trigger: TTGACTCCAAGGCTTAGTGCACATTCCATTATACCA...CGTGTAAAGGGGCCAGGATTTGCCTTGTGGTTTCCTAAAGGGGATTAGGGATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| 3UTR-3UTR GCA 90 bp | CCCCCAATCTTGCCAATCCAATCCTATCCTCCACTCACTGCTCCTTTTACGTCTTTCTTCTTAATGTCCTaGAGCATCCATAAACCAAAC | + |
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Preference number: 2 (lower is better) Translates to: PPILPIQSYPPLTAPFTSFFLMS*SIHKPN Trigger: GTTTGGTTTATGGATGCTGCAGGACATTAAGAAGAA...AGACGTAAAAGGAGCAGTGAGTGGAGGATAGGATTGGATTGGCAAGATTGGGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| 3UTR-3UTR CCA 90 bp | AAATTTCAGCAACTCACTGAGAATTTAATGGATGCCTACTCCTGGAATTCACCATGCTCCACATGTAAGTaGCAATCCCTAATCCCCTTT | + |
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Preference number: 2 (lower is better) Translates to: KFQQLTENLMDAYSWNSPCSTCK*QSLIPF Trigger: AAAGGGGATTAGGGATTGCCACTTACATGTGGAGCA...TGGTGAATTCCAGGAGTAGGCATCCATTAAATTCTCAGTGAGTTGCTGAAATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| 3UTR-3UTR CAA 90 bp | GACCCCCAACTGCATGCTTCTGATGGAGGTGGTAGCTTTACTGTATTCTGGGATACCGTTCCCCCAATCTaGCCAATCCAATCCTATCCT | + |
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Preference number: 3 (lower is better) Translates to: DPQLHASDGGGSFTVFWDTVPPI*PIQSYP Trigger: AGGATAGGATTGGATTGGCAAGATTGGGGGAACGGT...ATCCCAGAATACAGTAAAGCTACCACCTCCATCAGAAGCATGCAGTTGGGGGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| 3UTR CCA 72 bp | TCCCTAATCCCCTTTAGGAAACCACAAGGCAAATCCTaGCCCCTTTACACGTCCAGTATCACCTTTAAGCAC | + |
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Preference number: 3 (lower is better) Translates to: SLIPFRKPQGKS*PLYTSSITFKH Trigger: GTGCTTAAAGGTGATACTGGACGTGTAAAGGGGCCAGGATTTGCCTTGTGGTTTCCTAAAGGGGATTAGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| 3UTR CCA 72 bp | AGATTAAGATTAAATTCAATATGCTCCACATGTAAGTaGCAATCCCTAATCCCCTTTAGGAAACCACAAGGC | + |
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Preference number: 3 (lower is better) Translates to: RLRLNSICSTCK*QSLIPFRKPQG Trigger: GCCTTGTGGTTTCCTAAAGGGGATTAGGGATTGCCACTTACATGTGGAGCATATTGAATTTAATCTTAATCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS-3UTR CCA 90 bp | CAATCCCTAATCCCCTTTAGGAAACCACAAGGCAAATCCTGGCCCCTTTACACGCCACAAGGCAAATCCTaGCCCCTTTACACGTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: QSLIPFRKPQGKSWPLYTPQGKS*PLYTSS Trigger: ACTGGACGTGTAAAGGGGCCAGGATTTGCCTTGTGG...CGTGTAAAGGGGCCAGGATTTGCCTTGTGGTTTCCTAAAGGGGATTAGGGATTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS-3UTR TCA 90 bp | CCCAATCTTGCCAATCCAATCCTATCCTCCACTCACTGCTCCTTTTACGTCTTATCCCCACCCCCAGAATaGTTCAGGTCTGCAATGGTG | + |
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Preference number: 4 (lower is better) Translates to: PNLANPILSSTHCSFYVLSPPPE*FRSAMV Trigger: CACCATTGCAGACCTGAATCATTCTGGGGGTGGGGA...TAAGACGTAAAAGGAGCAGTGAGTGGAGGATAGGATTGGATTGGCAAGATTGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS-3UTR GCA 90 bp | GACCCCCAACTGCATGCTTCTGATGGAGGTGGTAGCTTTACTGTATTCTGGGATTGGTATAATGGAATGTaGACTAAGCCTTGGAGTCAA | + |
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Preference number: 4 (lower is better) Translates to: DPQLHASDGGGSFTVFWDWYNGM*TKPWSQ Trigger: TTGACTCCAAGGCTTAGTGCACATTCCATTATACCA...ATCCCAGAATACAGTAAAGCTACCACCTCCATCAGAAGCATGCAGTTGGGGGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS-3UTR CCA 90 bp | GACCCCCAACTGCATGCTTCTGATGGAGGTGGTAGCTTTACTGTATTCTGGGATAATTACACTTCAGGGTaGAATCCACCTATCCTATCT | + |
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Preference number: 4 (lower is better) Translates to: DPQLHASDGGGSFTVFWDNYTSG*NPPILS Trigger: AGATAGGATAGGTGGATTCCACCCTGAAGTGTAATT...ATCCCAGAATACAGTAAAGCTACCACCTCCATCAGAAGCATGCAGTTGGGGGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS-3UTR GCA 90 bp | CAATCCCTAATCCCCTTTAGGAAACCACAAGGCAAATCCTGGCCCCTTTACACGGCAGCTTTGTACCAATaGTTACGAATCTTAGTAACA | + |
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Preference number: 4 (lower is better) Translates to: QSLIPFRKPQGKSWPLYTAALYQ*LRILVT Trigger: TGTTACTAAGATTCGTAAGCATTGGTACAAAGCTGC...CGTGTAAAGGGGCCAGGATTTGCCTTGTGGTTTCCTAAAGGGGATTAGGGATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS-3UTR CCA 90 bp | GACCCCCAACTGCATGCTTCTGATGGAGGTGGTAGCTTTACTGTATTCTGGGATATTTGGAACTGTTCTTaGTACACAACAGGAATACAA | + |
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Preference number: 4 (lower is better) Translates to: DPQLHASDGGGSFTVFWDIWNCS*YTTGIQ Trigger: TTGTATTCCTGTTGTGTACCAAGAACAGTTCCAAAT...ATCCCAGAATACAGTAAAGCTACCACCTCCATCAGAAGCATGCAGTTGGGGGTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS-3UTR CCA 90 bp | CCCAATCTTGCCAATCCAATCCTATCCTCCACTCACTGCTCCTTTTACGTCTTAGCACATGCAACAATTTaGAACTGTTCTTGGTACACA | + |
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Preference number: 4 (lower is better) Translates to: PNLANPILSSTHCSFYVLAHATI*NCSWYT Trigger: TGTGTACCAAGAACAGTTCCAAATTGTTGCATGTGC...TAAGACGTAAAAGGAGCAGTGAGTGGAGGATAGGATTGGATTGGCAAGATTGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS-3UTR CCA 90 bp | GACCCCCAACTGCATGCTTCTGATGGAGGTGGTAGCTTTACTGTATTCTGGGATTTGAAAATCCTCCAATaGAATGTACTTAGATTCTGG | + |
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Preference number: 4 (lower is better) Translates to: DPQLHASDGGGSFTVFWDLKILQ*NVLRFW Trigger: CCAGAATCTAAGTACATTCCATTGGAGGATTTTCAA...ATCCCAGAATACAGTAAAGCTACCACCTCCATCAGAAGCATGCAGTTGGGGGTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS-3UTR TCA 90 bp | AAATTTCAGCAACTCACTGAGAATTTAATGGATGCCTACTCCTGGAATTCACCACAGGAATACAAACTCTaGGTCTTCCCACCCACCATT | + |
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Preference number: 4 (lower is better) Translates to: KFQQLTENLMDAYSWNSPQEYKL*VFPPTI Trigger: AATGGTGGGTGGGAAGACTCAGAGTTTGTATTCCTG...TGGTGAATTCCAGGAGTAGGCATCCATTAAATTCTCAGTGAGTTGCTGAAATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS-3UTR TCA 90 bp | AAATTTCAGCAACTCACTGAGAATTTAATGGATGCCTACTCCTGGAATTCACCACAGCAACAGCAGCCTTaGAAATCCTCCAATGGAATG | + |
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Preference number: 4 (lower is better) Translates to: KFQQLTENLMDAYSWNSPQQQQP*KSSNGM Trigger: CATTCCATTGGAGGATTTTCAAGGCTGCTGTTGCTG...TGGTGAATTCCAGGAGTAGGCATCCATTAAATTCTCAGTGAGTTGCTGAAATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS-3UTR TCA 90 bp | CCCAATCTTGCCAATCCAATCCTATCCTCCACTCACTGCTCCTTTTACGTCTTAATTTCAGCAACTCACTaGGAATTTAATGGATGCCTA | + |
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Preference number: 4 (lower is better) Translates to: PNLANPILSSTHCSFYVLISATH*EFNGCL Trigger: TAGGCATCCATTAAATTCTCAGTGAGTTGCTGAAAT...TAAGACGTAAAAGGAGCAGTGAGTGGAGGATAGGATTGGATTGGCAAGATTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS-3UTR CCA 90 bp | GTGGTAGCTTTACTGTATTCTGGGATACTTGCAACTAAAGAATCCAACCACACATGCTCCACATGTAAGTaGCAATCCCTAATCCCCTTT | + |
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Preference number: 4 (lower is better) Translates to: VVALLYSGILATKESNHTCSTCK*QSLIPF Trigger: AAAGGGGATTAGGGATTGCCACTTACATGTGGAGCA...TGTGTGGTTGGATTCTTTAGTTGCAAGTATCCCAGAATACAGTAAAGCTACCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS-3UTR GCA 90 bp | CTTGCCAATCCAATCCTATCCTCCACTCACTGCTCCTTTTACGTCTTAATGCATTTCTTCTTAATGTCCTaGAGCATCCATAAACCAAAC | + |
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Preference number: 4 (lower is better) Translates to: LANPILSSTHCSFYVLMHFFLMS*SIHKPN Trigger: GTTTGGTTTATGGATGCTGCAGGACATTAAGAAGAA...ATGCATTAAGACGTAAAAGGAGCAGTGAGTGGAGGATAGGATTGGATTGGCAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS-3UTR GCA 90 bp | GTGGTAGCTTTACTGTATTCTGGGATACTTGCAACTAAAGAATCCAACCACACACTATCCTCCACTCACTaGTCCTTTTACGTCTTAATG | + |
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Preference number: 4 (lower is better) Translates to: VVALLYSGILATKESNHTLSSTH*SFYVLM Trigger: CATTAAGACGTAAAAGGAGCAGTGAGTGGAGGATAG...TGTGTGGTTGGATTCTTTAGTTGCAAGTATCCCAGAATACAGTAAAGCTACCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS GCA 90 bp | AGGGGCGGACCGACGGCCTCCTTCCCGCCTGCGCGCTCGGCCAAGTaGGGCCGGGTCCTGCGGGACCGGCCCGAGTCCGCCGTAGACAAC | + |
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Preference number: 5 (lower is better) Translates to: RGGPTASFPPARSAK*GRVLRDRPESAVDN Trigger: GTTGTCTACGGCGGACTCGGGCCGGTCCCGCAGGACCCGGCCGCACTTGGCCGAGCGCGCAGGCGGGAAGGAGGCCGTCGGTCCGCCCCT 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366816.5 |
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| CDS GCA 90 bp | CGTAGACAACTTGATCCGCTAAGACTCCTGGGCCGGCCGCCTGCGTaGAGGGCAGCCCCTCGCCGGTGTTGGCCTCCGGGATCAGGGGAC | + |
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Preference number: 5 (lower is better) Translates to: RRQLDPLRLLGRPPA*RAAPRRCWPPGSGD Trigger: GTCCCCTGATCCCGGAGGCCAACACCGGCGAGGGGCTGCCCTGCACGCAGGCGGCCGGCCCAGGAGTCTTAGCGGATCAAGTTGTCTACG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000366816.5 |
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| CDS GCA 90 bp | TTGGTTTTGCCTCCTTCGGGTCCCTCGGCACAGGGTCCCCCAACCTaGCCGCCTCGCTCCCAGCGCCTCGAGCAGGAACCAACTCGGCTC | + |
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Preference number: 5 (lower is better) Translates to: LVLPPSGPSAQGPPT*PPRSQRLEQEPTRL Trigger: GAGCCGAGTTGGTTCCTGCTCGAGGCGCTGGGAGCGAGGCGGGCAGGTTGGGGGACCCTGTGCCGAGGGACCCGAAGGAGGCAAAACCAA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000661429.1 |
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| CDS-3UTR CAA 90 bp | CCCCCAATCTTGCCAATCCAATCCTATCCTCCACTCACTGCTCCTTTTACGTCTACCGTTCCCCCAATCTaGCCAATCCAATCCTATCCT | + |
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Preference number: 5 (lower is better) Translates to: PPILPIQSYPPLTAPFTSTVPPI*PIQSYP Trigger: AGGATAGGATTGGATTGGCAAGATTGGGGGAACGGT...AGACGTAAAAGGAGCAGTGAGTGGAGGATAGGATTGGATTGGCAAGATTGGGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS-3UTR CAA 90 bp | CAATCCCTAATCCCCTTTAGGAAACCACAAGGCAAATCCTGGCCCCTTTACACGACAGCAACAGCAGCCTaGAAAATCCTCCAATGGAAT | + |
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Preference number: 5 (lower is better) Translates to: QSLIPFRKPQGKSWPLYTTATAA*KILQWN Trigger: ATTCCATTGGAGGATTTTCAAGGCTGCTGTTGCTGT...CGTGTAAAGGGGCCAGGATTTGCCTTGTGGTTTCCTAAAGGGGATTAGGGATTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS-3UTR CAA 90 bp | CAATCCCTAATCCCCTTTAGGAAACCACAAGGCAAATCCTGGCCCCTTTACACGAGCACATGCAACAATTaGGAACTGTTCTTGGTACAC | + |
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Preference number: 5 (lower is better) Translates to: QSLIPFRKPQGKSWPLYTSTCNN*ELFLVH Trigger: GTGTACCAAGAACAGTTCCAAATTGTTGCATGTGCT...CGTGTAAAGGGGCCAGGATTTGCCTTGTGGTTTCCTAAAGGGGATTAGGGATTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS-3UTR CAA 90 bp | CCCAATCTTGCCAATCCAATCCTATCCTCCACTCACTGCTCCTTTTACGTCTTATGTATTCTGGGATACTaGCAACTAAAGAATCCAACC | + |
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Preference number: 5 (lower is better) Translates to: PNLANPILSSTHCSFYVLCILGY*QLKNPT Trigger: GGTTGGATTCTTTAGTTGCAAGTATCCCAGAATACA...TAAGACGTAAAAGGAGCAGTGAGTGGAGGATAGGATTGGATTGGCAAGATTGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS-3UTR CAA 90 bp | CCCAATCTTGCCAATCCAATCCTATCCTCCACTCACTGCTCCTTTTACGTCTTAAATTTGGAACTGTTCTaGGTACACAACAGGAATACA | + |
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Preference number: 5 (lower is better) Translates to: PNLANPILSSTHCSFYVLNLELF*VHNRNT Trigger: TGTATTCCTGTTGTGTACCAAGAACAGTTCCAAATT...TAAGACGTAAAAGGAGCAGTGAGTGGAGGATAGGATTGGATTGGCAAGATTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS GCA 72 bp | CTTGATCCGCTAAGACTCCTGGGCCGGCCGCCTGCGTaGAGGGCAGCCCCTCGCCGGTGTTGGCCTCCGGGA | + |
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Preference number: 6 (lower is better) Translates to: LDPLRLLGRPPA*RAAPRRCWPPG Trigger: TCCCGGAGGCCAACACCGGCGAGGGGCTGCCCTGCACGCAGGCGGCCGGCCCAGGAGTCTTAGCGGATCAAG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366816.5 |
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| CDS GCA 72 bp | CCTCCTTCGGGTCCCTCGGCACAGGGTCCCCCAACCTaGCCGCCTCGCTCCCAGCGCCTCGAGCAGGAACCA | + |
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Preference number: 6 (lower is better) Translates to: PPSGPSAQGPPT*PPRSQRLEQEP Trigger: TGGTTCCTGCTCGAGGCGCTGGGAGCGAGGCGGGCAGGTTGGGGGACCCTGTGCCGAGGGACCCGAAGGAGG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000661429.1 |
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| CDS TCA 72 bp | GGAACTGTTCTTGGTACACAACAGGAATACAAACTCTaGGTCTTCCCACCCACCATTTTACCTGCAAAGCAC | + |
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Preference number: 6 (lower is better) Translates to: GTVLGTQQEYKL*VFPPTILPAKH Trigger: GTGCTTTGCAGGTAAAATGGTGGGTGGGAAGACTCAGAGTTTGTATTCCTGTTGTGTACCAAGAACAGTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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| CDS CAA 72 bp | AATGATATAAGCACATGCAACAATTTGGAACTGTTCTaGGTACACAACAGGAATACAAACTCTGAGTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: NDISTCNNLELF*VHNRNTNSESS Trigger: GGAAGACTCAGAGTTTGTATTCCTGTTGTGTACCAAGAACAGTTCCAAATTGTTGCATGTGCTTATATCATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366814.3 |
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