Pregenerated sensors for GMFB (Homo sapiens)
Ensembl gene IDs: ENSG00000197045Ensembl transcript IDs: ENST00000553566.5, ENST00000553952.1, ENST00000554908.5
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGAACTGAGGAACATACGCTGGTCTTCCAGAGTCTGAATGTCAAATaGAAATATCAGAGGGAGATGGAGATCAGCCACAAATCTCCAGCA | + |
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Preference number: 1 (lower is better) Translates to: GTEEHTLVFQSLNVK*KYQREMEISHKSPA Trigger: TGCTGGAGATTTGTGGCTGATCTCCATCTCCCTCTGATATTTCCATTTGACATTCAGACTCTGGAAGACCAGCGTATGTTCCTCAGTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR TCA 90 bp | TATCAGAGGGAGATGGAGATCAGCCACAAATCTCCAGCAAGAATCTaGATCAGGCCCAGAAAGCATAACGGCTATAGAAAAGCAATGTAT | + |
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Preference number: 1 (lower is better) Translates to: YQREMEISHKSPARI*IRPRKHNGYRKAMY Trigger: ATACATTGCTTTTCTATAGCCGTTATGCTTTCTGGGCCTGATTCAGATTCTTGCTGGAGATTTGTGGCTGATCTCCATCTCCCTCTGATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR TCA 90 bp | AAGACATCCCAAGTAAACACAACTAAAATCAATCTAGTTAGGAACTaGGGAACATACGCTGGTCTTCCAGAGTCTGAATGTCAAATGGAA | + |
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Preference number: 1 (lower is better) Translates to: KTSQVNTTKINLVRN*GTYAGLPESECQME Trigger: TTCCATTTGACATTCAGACTCTGGAAGACCAGCGTATGTTCCTCAGTTCCTAACTAGATTGATTTTAGTTGTGTTTACTTGGGATGTCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR-3UTR GCA 90 bp | TCAAATGGAAATATCAGAGGGAGATGGAGATCAGCCACAAATCTCCAGCAAGAACTTTCTAGGGATGCATaGACACAGGCACATGGACAC | + |
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Preference number: 2 (lower is better) Translates to: SNGNIRGRWRSATNLQQELSRDA*TQAHGH Trigger: GTGTCCATGTGCCTGTGTGCATGCATCCCTAGAAAG...TTCTTGCTGGAGATTTGTGGCTGATCTCCATCTCCCTCTGATATTTCCATTTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR-3UTR CCA 90 bp | CCCAAACCGTTAGAGCAACTCCAGTGTCCCTGTGTTACAAATCAGGAAAAAGTAGTGGTAACAATCACATaGGCTAAGGGGAAACAGCAG | + |
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Preference number: 2 (lower is better) Translates to: PKPLEQLQCPCVTNQEKVVVTIT*AKGKQQ Trigger: CTGCTGTTTCCCCTTAGCCCATGTGATTGTTACCAC...TACTTTTTCCTGATTTGTAACACAGGGACACTGGAGTTGCTCTAACGGTTTGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR-3UTR TCA 90 bp | TCAAATGGAAATATCAGAGGGAGATGGAGATCAGCCACAAATCTCCAGCAAGAAATTTGGAGCCAGATGTaGATCCTAAGTCCTAGACAG | + |
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Preference number: 2 (lower is better) Translates to: SNGNIRGRWRSATNLQQEIWSQM*ILSPRQ Trigger: CTGTCTAGGACTTAGGATTCACATCTGGCTCCAAAT...TTCTTGCTGGAGATTTGTGGCTGATCTCCATCTCCCTCTGATATTTCCATTTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR-3UTR TCA 90 bp | TCAAATGGAAATATCAGAGGGAGATGGAGATCAGCCACAAATCTCCAGCAAGAACTGCTGCAAAACAGGTaGAACAAAACCTCATTTCCT | + |
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Preference number: 2 (lower is better) Translates to: SNGNIRGRWRSATNLQQELLQNR*NKTSFP Trigger: AGGAAATGAGGTTTTGTTTCACCTGTTTTGCAGCAG...TTCTTGCTGGAGATTTGTGGCTGATCTCCATCTCCCTCTGATATTTCCATTTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR-3UTR TCA 90 bp | CCCAAACCGTTAGAGCAACTCCAGTGTCCCTGTGTTACAAATCAGGAAAAAGTATATAACTATACACAATaGAGCGAGGTTGTCGTTCAG | + |
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Preference number: 2 (lower is better) Translates to: PKPLEQLQCPCVTNQEKVYNYTQ*SEVVVQ Trigger: CTGAACGACAACCTCGCTTCATTGTGTATAGTTATA...TACTTTTTCCTGATTTGTAACACAGGGACACTGGAGTTGCTCTAACGGTTTGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR-3UTR TCA 90 bp | CCCAAACCGTTAGAGCAACTCCAGTGTCCCTGTGTTACAAATCAGGAAAAAGTATTTTTATTGCAGGCCTaGACAGTGGTGATAGAAGTT | + |
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Preference number: 2 (lower is better) Translates to: PKPLEQLQCPCVTNQEKVFLLQA*TVVIEV Trigger: AACTTCTATCACCACTGTTCAGGCCTGCAATAAAAA...TACTTTTTCCTGATTTGTAACACAGGGACACTGGAGTTGCTCTAACGGTTTGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR-3UTR TCA 90 bp | CCCAAACCGTTAGAGCAACTCCAGTGTCCCTGTGTTACAAATCAGGAAAAAGTAGACATTTGTAGATCCTaGCTTTTAGAGCCTTGCAAA | + |
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Preference number: 2 (lower is better) Translates to: PKPLEQLQCPCVTNQEKVDICRS*LLEPCK Trigger: TTTGCAAGGCTCTAAAAGTCAGGATCTACAAATGTC...TACTTTTTCCTGATTTGTAACACAGGGACACTGGAGTTGCTCTAACGGTTTGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR-3UTR TCA 90 bp | CTAAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCTCTCCAGCAAGAATCTaGATCAGGCCCAGAAAGCAT | + |
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Preference number: 2 (lower is better) Translates to: LSTQLPKYSNQDNMKPKLSPARI*IRPRKH Trigger: ATGCTTTCTGGGCCTGATTCAGATTCTTGCTGGAGA...GAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR-3UTR TCA 90 bp | CTAAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCAAGGCATTCCAGAGTTaGTTATTAAGCACCCAAGGG | + |
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Preference number: 2 (lower is better) Translates to: LSTQLPKYSNQDNMKPKLKAFQS*LLSTQG Trigger: CCCTTGGGTGCTTAATAATCAACTCTGGAATGCCTT...GAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR-3UTR CCA 90 bp | CTAAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCAATATCAGAGGGAGATaGAGATCAGCCACAAATCTC | + |
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Preference number: 2 (lower is better) Translates to: LSTQLPKYSNQDNMKPKLNIRGR*RSATNL Trigger: GAGATTTGTGGCTGATCTCCATCTCCCTCTGATATT...GAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR-3UTR GCA 90 bp | CTAAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCTCTTACATTGCACACTaGCTACAGAAAGAGACAGTT | + |
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Preference number: 2 (lower is better) Translates to: LSTQLPKYSNQDNMKPKLSYIAH*LQKETV Trigger: AACTGTCTCTTTCTGTAGGCAGTGTGCAATGTAAGA...GAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR-3UTR CCA 90 bp | CTAAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCAAATACACAAGGTTTTaGGATGGTAGTGGACCAGTA | + |
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Preference number: 2 (lower is better) Translates to: LSTQLPKYSNQDNMKPKLKYTRF*DGSGPV Trigger: TACTGGTCCACTACCATCCCAAAACCTTGTGTATTT...GAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR-3UTR CCA 90 bp | CTAAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCAAGTCATTCATCCACTaGGTCTGTTTTCCTATCTAC | + |
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Preference number: 2 (lower is better) Translates to: LSTQLPKYSNQDNMKPKLKSFIH*VCFPIY Trigger: GTAGATAGGAAAACAGACCCAGTGGATGAATGACTT...GAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR-3UTR CCA 90 bp | CTAAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCTTCAGGCTTACATCCTaGAAAAGAGAGATTAGTGTA | + |
|
Preference number: 2 (lower is better) Translates to: LSTQLPKYSNQDNMKPKLFRLTS*KREISV Trigger: TACACTAATCTCTCTTTTCCAGGATGTAAGCCTGAA...GAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTTAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR-3UTR CCA 90 bp | CTAAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCTACACTCACCAAGTTTaGTTAGTTTTTAGAGTCTCT | + |
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Preference number: 2 (lower is better) Translates to: LSTQLPKYSNQDNMKPKLYTHQV*LVFRVS Trigger: AGAGACTCTAAAAACTAACCAAACTTGGTGAGTGTA...GAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTTAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR TCA 72 bp | GAGATGGAGATCAGCCACAAATCTCCAGCAAGAATCTaGATCAGGCCCAGAAAGCATAACGGCTATAGAAAA | + |
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Preference number: 3 (lower is better) Translates to: EMEISHKSPARI*IRPRKHNGYRK Trigger: TTTTCTATAGCCGTTATGCTTTCTGGGCCTGATTCAGATTCTTGCTGGAGATTTGTGGCTGATCTCCATCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR CCA 72 bp | TACTGTTATGCAACCCTGAGCAAGTCATTCATCCACTaGGTCTGTTTTCCTATCTACAGAATATCTCACAGG | + |
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Preference number: 3 (lower is better) Translates to: YCYATLSKSFIH*VCFPIYRISHR Trigger: CCTGTGAGATATTCTGTAGATAGGAAAACAGACCCAGTGGATGAATGACTTGCTCAGGGTTGCATAACAGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR TCA 72 bp | ATCCTAGCTCTGTCTAAATTTACTGTTATGCAACCCTaGGCAAGTCATTCATCCACTGGGTCTGTTTTCCTA | + |
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Preference number: 3 (lower is better) Translates to: ILALSKFTVMQP*ASHSSTGSVFL Trigger: TAGGAAAACAGACCCAGTGGATGAATGACTTGCTCAGGGTTGCATAACAGTAAATTTAGACAGAGCTAGGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR-3UTR CAA 90 bp | CTAAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCAGGATTAGAACAGACTaGAGGCCGTTAACAGCTCCT | + |
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Preference number: 3 (lower is better) Translates to: LSTQLPKYSNQDNMKPKLRIRTD*RPLTAP Trigger: AGGAGCTGTTAACGGCCTCAAGTCTGTTCTAATCCT...GAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR-3UTR CAA 90 bp | CTAAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCAAAGGCATTCCAGAGTaGATTATTAAGCACCCAAGG | + |
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Preference number: 3 (lower is better) Translates to: LSTQLPKYSNQDNMKPKLKGIPE*IIKHPR Trigger: CCTTGGGTGCTTAATAATCAACTCTGGAATGCCTTT...GAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR TCA 72 bp | CAAGTAAACACAACTAAAATCAATCTAGTTAGGAACTaGGGAACATACGCTGGTCTTCCAGAGTCTGAATGT | + |
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Preference number: 3 (lower is better) Translates to: QVNTTKINLVRN*GTYAGLPESEC Trigger: ACATTCAGACTCTGGAAGACCAGCGTATGTTCCTCAGTTCCTAACTAGATTGATTTTAGTTGTGTTTACTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| 3UTR-3UTR CAA 90 bp | AAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCTCAATATAAATACCACCTaGGTTAGTTCAGCTGTCTGG | + |
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Preference number: 3 (lower is better) Translates to: KYSVTKVQQSRQHETKTLNINTT*VSSAVW Trigger: CCAGACAGCTGAACTAACCAAGGTGGTATTTATATT...GAGAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS-3UTR GCA 90 bp | CCCAAACCGTTAGAGCAACTCCAGTGTCCCTGTGTTACAAATCAGGAAAAAGTACTTTCTAGGGATGCATaGACACAGGCACATGGACAC | + |
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Preference number: 4 (lower is better) Translates to: PKPLEQLQCPCVTNQEKVLSRDA*TQAHGH Trigger: GTGTCCATGTGCCTGTGTGCATGCATCCCTAGAAAG...TACTTTTTCCTGATTTGTAACACAGGGACACTGGAGTTGCTCTAACGGTTTGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS-3UTR TCA 90 bp | CCCAAACCGTTAGAGCAACTCCAGTGTCCCTGTGTTACAAATCAGGAAAAAGTAATTTGGAGCCAGATGTaGATCCTAAGTCCTAGACAG | + |
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Preference number: 4 (lower is better) Translates to: PKPLEQLQCPCVTNQEKVIWSQM*ILSPRQ Trigger: CTGTCTAGGACTTAGGATTCACATCTGGCTCCAAAT...TACTTTTTCCTGATTTGTAACACAGGGACACTGGAGTTGCTCTAACGGTTTGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS-3UTR TCA 90 bp | CCCAAACCGTTAGAGCAACTCCAGTGTCCCTGTGTTACAAATCAGGAAAAAGTAAATCTAGTTAGGAACTaGGGAACATACGCTGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: PKPLEQLQCPCVTNQEKVNLVRN*GTYAGL Trigger: AAGACCAGCGTATGTTCCTCAGTTCCTAACTAGATT...TACTTTTTCCTGATTTGTAACACAGGGACACTGGAGTTGCTCTAACGGTTTGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS-3UTR CCA 90 bp | CCCAAACCGTTAGAGCAACTCCAGTGTCCCTGTGTTACAAATCAGGAAAAAGTAAATATCAGAGGGAGATaGAGATCAGCCACAAATCTC | + |
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Preference number: 4 (lower is better) Translates to: PKPLEQLQCPCVTNQEKVNIRGR*RSATNL Trigger: GAGATTTGTGGCTGATCTCCATCTCCCTCTGATATT...TACTTTTTCCTGATTTGTAACACAGGGACACTGGAGTTGCTCTAACGGTTTGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS-3UTR CCA 90 bp | CCCAAACCGTTAGAGCAACTCCAGTGTCCCTGTGTTACAAATCAGGAAAAAGTAAAATACACAAGGTTTTaGGATGGTAGTGGACCAGTA | + |
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Preference number: 4 (lower is better) Translates to: PKPLEQLQCPCVTNQEKVKYTRF*DGSGPV Trigger: TACTGGTCCACTACCATCCCAAAACCTTGTGTATTT...TACTTTTTCCTGATTTGTAACACAGGGACACTGGAGTTGCTCTAACGGTTTGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS-3UTR CCA 90 bp | CCCAAACCGTTAGAGCAACTCCAGTGTCCCTGTGTTACAAATCAGGAAAAAGTAAAGTCATTCATCCACTaGGTCTGTTTTCCTATCTAC | + |
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Preference number: 4 (lower is better) Translates to: PKPLEQLQCPCVTNQEKVKSFIH*VCFPIY Trigger: GTAGATAGGAAAACAGACCCAGTGGATGAATGACTT...TACTTTTTCCTGATTTGTAACACAGGGACACTGGAGTTGCTCTAACGGTTTGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS-3UTR TCA 90 bp | TCAAATGGAAATATCAGAGGGAGATGGAGATCAGCCACAAATCTCCAGCAAGAATGGTCTTCCAGAGTCTaGATGTCAAATGGAAATATC | + |
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Preference number: 4 (lower is better) Translates to: SNGNIRGRWRSATNLQQEWSSRV*MSNGNI Trigger: GATATTTCCATTTGACATTCAGACTCTGGAAGACCA...TTCTTGCTGGAGATTTGTGGCTGATCTCCATCTCCCTCTGATATTTCCATTTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS-3UTR CCA 90 bp | CCCAAACCGTTAGAGCAACTCCAGTGTCCCTGTGTTACAAATCAGGAAAAAGTATTCAGGCTTACATCCTaGAAAAGAGAGATTAGTGTA | + |
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Preference number: 4 (lower is better) Translates to: PKPLEQLQCPCVTNQEKVFRLTS*KREISV Trigger: TACACTAATCTCTCTTTTCCAGGATGTAAGCCTGAA...TACTTTTTCCTGATTTGTAACACAGGGACACTGGAGTTGCTCTAACGGTTTGGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS-3UTR TCA 90 bp | AAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCTCAAGGCATTCCAGAGTTaGTTATTAAGCACCCAAGGG | + |
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Preference number: 4 (lower is better) Translates to: KYSVTKVQQSRQHETKTLKAFQS*LLSTQG Trigger: CCCTTGGGTGCTTAATAATCAACTCTGGAATGCCTT...GAGAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS-3UTR TCA 90 bp | CTAAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCCTGCTGCAAAACAGGTaGAACAAAACCTCATTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LSTQLPKYSNQDNMKPKLLLQNR*NKTSFP Trigger: AGGAAATGAGGTTTTGTTTCACCTGTTTTGCAGCAG...GAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS-3UTR GCA 90 bp | TCAAATGGAAATATCAGAGGGAGATGGAGATCAGCCACAAATCTCCAGCAAGAACTAAATTTACTGTTATaGAACCCTGAGCAAGTCATT | + |
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Preference number: 4 (lower is better) Translates to: SNGNIRGRWRSATNLQQELNLLL*NPEQVI Trigger: AATGACTTGCTCAGGGTTGCATAACAGTAAATTTAG...TTCTTGCTGGAGATTTGTGGCTGATCTCCATCTCCCTCTGATATTTCCATTTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS-3UTR TCA 90 bp | CTAAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCTATAACTATACACAATaGAGCGAGGTTGTCGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: LSTQLPKYSNQDNMKPKLYNYTQ*SEVVVQ Trigger: CTGAACGACAACCTCGCTTCATTGTGTATAGTTATA...GAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS-3UTR GCA 90 bp | AAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCTCTCTTACATTGCACACTaGCTACAGAAAGAGACAGTT | + |
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Preference number: 4 (lower is better) Translates to: KYSVTKVQQSRQHETKTLSYIAH*LQKETV Trigger: AACTGTCTCTTTCTGTAGGCAGTGTGCAATGTAAGA...GAGAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS GCA 90 bp | TCCCATGGCCCGCTGGGCGGGTCCACCCCGGGCCCAGCTGGAAGATaGTGCCCTGAGGCGTGGTGGCGGCGGCAGAGGCCAAGTACTCTA | + |
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Preference number: 5 (lower is better) Translates to: SHGPLGGSTPGPAGR*CPEAWWRRQRPSTL Trigger: TAGAGTACTTGGCCTCTGCCGCCGCCACCACGCCTCAGGGCAGCATCTTCCAGCTGGGCCCGGGGTGGACCCGCCCAGCGGGCCATGGGA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553566.5 |
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| CDS CCA 90 bp | GGGTCCACCCCGGGCCCAGCTGGAAGATGCTGCCCTGAGGCGTGGTaGCGGCGGCAGAGGCCAAGTACTCTAGCTATGGGCACTGGCCAG | + |
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Preference number: 5 (lower is better) Translates to: GSTPGPAGRCCPEAW*RRQRPSTLAMGTGQ Trigger: CTGGCCAGTGCCCATAGCTAGAGTACTTGGCCTCTGCCGCCGCCACCACGCCTCAGGGCAGCATCTTCCAGCTGGGCCCGGGGTGGACCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553566.5 |
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| CDS GCA 90 bp | CAGGCTATTTTTAGTCCCCCAAGAAGGATGGGTTGGATGGGTCACTaGAGATGGGAATCCTCATTACCCAAGGACCAAGACGACCGCCTT | + |
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Preference number: 5 (lower is better) Translates to: QAIFSPPRRMGWMGH*RWESSLPKDQDDRL Trigger: AAGGCGGTCGTCTTGGTCCTTGGGTAATGAGGATTCCCATCTGCAGTGACCCATCCAACCCATCCTTCTTGGGGGACTAAAAATAGCCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000553952.1 |
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| CDS CCA 90 bp | CGACCGCCTTCTCCAGAGCTGTACAGGCAGCTGATAAAAGGACTATaGGGGAGGTGGGACAATCCACCTCTGTTCTGTGACATTAGAATT | + |
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Preference number: 5 (lower is better) Translates to: RPPSPELYRQLIKGL*GRWDNPPLFCDIRI Trigger: AATTCTAATGTCACAGAACAGAGGTGGATTGTCCCACCTCCCCCATAGTCCTTTTATCAGCTGCCTGTACAGCTCTGGAGAAGGCGGTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000553952.1 |
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| CDS CCA 90 bp | TCTCCAGAGCTGTACAGGCAGCTGATAAAAGGACTATGGGGGAGGTaGGACAATCCACCTCTGTTCTGTGACATTAGAATTAGCTGTTAC | + |
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Preference number: 5 (lower is better) Translates to: SPELYRQLIKGLWGR*DNPPLFCDIRISCY Trigger: GTAACAGCTAATTCTAATGTCACAGAACAGAGGTGGATTGTCCCACCTCCCCCATAGTCCTTTTATCAGCTGCCTGTACAGCTCTGGAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000553952.1 |
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| CDS-3UTR CAA 90 bp | CCCAAACCGTTAGAGCAACTCCAGTGTCCCTGTGTTACAAATCAGGAAAAAGTAAATATAAATACCACCTaGGTTAGTTCAGCTGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: PKPLEQLQCPCVTNQEKVNINTT*VSSAVW Trigger: CCAGACAGCTGAACTAACCAAGGTGGTATTTATATT...TACTTTTTCCTGATTTGTAACACAGGGACACTGGAGTTGCTCTAACGGTTTGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS-3UTR CAA 90 bp | AAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCTCAGGATTAGAACAGACTaGAGGCCGTTAACAGCTCCT | + |
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Preference number: 5 (lower is better) Translates to: KYSVTKVQQSRQHETKTLRIRTD*RPLTAP Trigger: AGGAGCTGTTAACGGCCTCAAGTCTGTTCTAATCCT...GAGAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS CCA 90 bp | CCACTTAAAAGTACTCTTCCTGAAACCAGAGTTCAAATCTACAACTaGAATAATGCCCAAAGTCACTATGTACACAATGCTGAACTTTGT | + |
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Preference number: 5 (lower is better) Translates to: PLKSTLPETRVQIYN*NNAQSHYVHNAELC Trigger: ACAAAGTTCAGCATTGTGTACATAGTGACTTTGGGCATTATTCCAGTTGTAGATTTGAACTCTGGTTTCAGGAAGAGTACTTTTAAGTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553952.1 |
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| CDS-3UTR CAA 90 bp | AAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCTCGAGTTGTGTCAGTTGTaGGTTTTGTTAAACGATGAC | + |
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Preference number: 5 (lower is better) Translates to: KYSVTKVQQSRQHETKTLELCQL*VLLNDD Trigger: GTCATCGTTTAACAAAACCAACAACTGACACAACTC...GAGAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS-3UTR CAA 90 bp | AAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCTCAAGGAGTTGTGTCAGTaGTTGGTTTTGTTAAACGAT | + |
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Preference number: 5 (lower is better) Translates to: KYSVTKVQQSRQHETKTLKELCQ*LVLLND Trigger: ATCGTTTAACAAAACCAACAACTGACACAACTCCTT...GAGAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS-3UTR CAA 90 bp | CTAAGTACTCAGTTACCAAAGTACAGCAATCAAGACAACATGAAACCAAAACTCCTTATAATAGCAGCGTaGTTCGTTTCTTTGCGAAAA | + |
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Preference number: 5 (lower is better) Translates to: LSTQLPKYSNQDNMKPKLLIIAA*FVSLRK Trigger: TTTTCGCAAAGAAACGAACAACGCTGCTATTATAAG...GAGTTTTGGTTTCATGTTGTCTTGATTGCTGTACTTTGGTAACTGAGTACTTAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554908.5 |
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| CDS CCA 72 bp | GCGGCGGCAGAGGCCAAGTACTCTAGCTATGGGCACTaGCCAGCTGCTGGGAGCGGAAGCGGCCGCCGAGCC | + |
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Preference number: 6 (lower is better) Translates to: AAAEAKYSSYGH*PAAGSGSGRRA Trigger: GGCTCGGCGGCCGCTTCCGCTCCCAGCAGCTGGCCAGTGCCCATAGCTAGAGTACTTGGCCTCTGCCGCCGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553566.5 |
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| CDS CCA 72 bp | AACAACCAAAGACTCACTCCTAGTCCCATGGCCCGCTaGGCGGGTCCACCCCGGGCCCAGCTGGAAGATGCT | + |
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Preference number: 6 (lower is better) Translates to: NNQRLTPSPMAR*AGPPRAQLEDA Trigger: AGCATCTTCCAGCTGGGCCCGGGGTGGACCCGCCCAGCGGGCCATGGGACTAGGAGTGAGTCTTTGGTTGTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553566.5 |
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| CDS CCA 72 bp | CCCCCAAGAAGGATGGGTTGGATGGGTCACTGCAGATaGGAATCCTCATTACCCAAGGACCAAGACGACCGC | + |
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Preference number: 6 (lower is better) Translates to: PPRRMGWMGHCR*ESSLPKDQDDR Trigger: GCGGTCGTCTTGGTCCTTGGGTAATGAGGATTCCCATCTGCAGTGACCCATCCAACCCATCCTTCTTGGGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000553952.1 |
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| CDS CCA 72 bp | TCTCCAGAGCTGTACAGGCAGCTGATAAAAGGACTATaGGGGAGGTGGGACAATCCACCTCTGTTCTGTGAC | + |
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Preference number: 6 (lower is better) Translates to: SPELYRQLIKGL*GRWDNPPLFCD Trigger: GTCACAGAACAGAGGTGGATTGTCCCACCTCCCCCATAGTCCTTTTATCAGCTGCCTGTACAGCTCTGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000553952.1 |
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| CDS GCA 72 bp | TTTAGTCCCCCAAGAAGGATGGGTTGGATGGGTCACTaGAGATGGGAATCCTCATTACCCAAGGACCAAGAC | + |
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Preference number: 6 (lower is better) Translates to: FSPPRRMGWMGH*RWESSLPKDQD Trigger: GTCTTGGTCCTTGGGTAATGAGGATTCCCATCTGCAGTGACCCATCCAACCCATCCTTCTTGGGGGACTAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000553952.1 |
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| CDS CCA 72 bp | CTGTACAGGCAGCTGATAAAAGGACTATGGGGGAGGTaGGACAATCCACCTCTGTTCTGTGACATTAGAATT | + |
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Preference number: 6 (lower is better) Translates to: LYRQLIKGLWGR*DNPPLFCDIRI Trigger: AATTCTAATGTCACAGAACAGAGGTGGATTGTCCCACCTCCCCCATAGTCCTTTTATCAGCTGCCTGTACAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000553952.1 |
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