RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GKAP1 (Homo sapiens)

Ensembl gene IDs: ENSG00000165113

Ensembl transcript IDs: ENST00000376362.1, ENST00000376365.7, ENST00000376371.7, ENST00000388782.8, ENST00000485742.5

Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp AGATGTCAGATGTGTCCAAGATGGAGTACTTCAGATCCCCTTCCTCTTGACTTCAGAACTAAGTACTGCTaGGGCCATCGTAAAGATTTT +
Preference number: 4 (lower is better)
Translates to: RCQMCPRWSTSDPLPLDFRTKYC*GHRKDF
Trigger: AAAATCTTTACGATGGCCTCAGCAGTACTTAGTTCT...GAAGTCAAGAGGAAGGGGATCTGAAGTACTCCATCTTGGACACATCTGACATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS-3UTR TCA 90 bp ACATTTCAGATGTCAGATGTGTCCAAGATGGAGTACTTCAGATCCCCTTCCTCTAATGGAAGATCATGTTaGGCGTTACAAACAGCATGG +
Preference number: 4 (lower is better)
Translates to: TFQMSDVSKMEYFRSPSSNGRSC*ALQTAW
Trigger: CCATGCTGTTTGTAACGCTCAACATGATCTTCCATT...AGAGGAAGGGGATCTGAAGTACTCCATCTTGGACACATCTGACATCTGAAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS-3UTR GCA 90 bp AGATGTCAGATGTGTCCAAGATGGAGTACTTCAGATCCCCTTCCTCTTGACTTCCTTTGTCTCCACTCTTaGCAATTTTCTTCTCGTGAA +
Preference number: 4 (lower is better)
Translates to: RCQMCPRWSTSDPLPLDFLCLHS*QFSSRE
Trigger: TTCACGAGAAGAAAATTGGCAAGAGTGGAGACAAAG...GAAGTCAAGAGGAAGGGGATCTGAAGTACTCCATCTTGGACACATCTGACATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS-3UTR TCA 90 bp AGAATCCTCCATCATGTGATAAAGTCTGAGAAGAACTCAATTCCTCAGTCTTTTCTTTTAGTGATACTGTaGGAGGTCTGTCTTTTCCCT +
Preference number: 4 (lower is better)
Translates to: RILHHVIKSEKNSIPQSFLLVIL*EVCLFP
Trigger: AGGGAAAAGACAGACCTCTCACAGTATCACTAAAAG...AAAAGACTGAGGAATTGAGTTCTTCTCAGACTTTATCACATGATGGAGGATTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS-3UTR GCA 90 bp ATCCTCCATCATGTGATAAAGTCTGAGAAGAACTCAATTCCTCAGTCTTTTTACATTCCTGAGCTCATTTaGTTCACTCTGTTGCTGTTC +
Preference number: 4 (lower is better)
Translates to: ILHHVIKSEKNSIPQSFYIPELI*FTLLLF
Trigger: GAACAGCAACAGAGTGAAGCAAATGAGCTCAGGAAT...GTAAAAAGACTGAGGAATTGAGTTCTTCTCAGACTTTATCACATGATGGAGGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS-3UTR CCA 90 bp GTTTACTTAGTAACAATGCCTTCTCAAGATCTGCTTCAAACATTTCAGATGTCAGCGTTACAAACAGCATaGGAGGATTTCTGGGGAATT +
Preference number: 4 (lower is better)
Translates to: VYLVTMPSQDLLQTFQMSALQTA*EDFWGI
Trigger: AATTCCCCAGAAATCCTCCCATGCTGTTTGTAACGC...TGACATCTGAAATGTTTGAAGCAGATCTTGAGAAGGCATTGTTACTAAGTAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS-3UTR TCA 90 bp AGTTTACTTAGTAACAATGCCTTCTCAAGATCTGCTTCAAACATTTCAGATGTCCTTCTGTACTGGGTTTaGCAATGGAAGATCATGTTG +
Preference number: 4 (lower is better)
Translates to: SLLSNNAFSRSASNISDVLLYWV*QWKIML
Trigger: CAACATGATCTTCCATTGTCAAACCCAGTACAGAAG...GACATCTGAAATGTTTGAAGCAGATCTTGAGAAGGCATTGTTACTAAGTAAACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS-3UTR TCA 90 bp CTGAGAAGAACTCAATTCCTCAGTCTTTTTACTAATGTGATCTTCCGAATGAAACCAATTTTCTTCTCGTaGATCCTTCTGTACTGGGTT +
Preference number: 4 (lower is better)
Translates to: LRRTQFLSLFTNVIFRMKPIFFS*ILLYWV
Trigger: AACCCAGTACAGAAGGATTCACGAGAAGAAAATTGG...TTTCATTCGGAAGATCACATTAGTAAAAAGACTGAGGAATTGAGTTCTTCTCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS-3UTR TCA 90 bp CTGAGAAGAACTCAATTCCTCAGTCTTTTTACTAATGTGATCTTCCGAATGAAATTGCTTCCTAAAGTTTaGGACTTTCCAGTATTTCGA +
Preference number: 4 (lower is better)
Translates to: LRRTQFLSLFTNVIFRMKLLPKV*DFPVFR
Trigger: TCGAAATACTGGAAAGTCTCAAACTTTAGGAAGCAA...TTTCATTCGGAAGATCACATTAGTAAAAAGACTGAGGAATTGAGTTCTTCTCAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS-3UTR TCA 90 bp CTGAGAAGAACTCAATTCCTCAGTCTTTTTACTAATGTGATCTTCCGAATGAAAAACTTTGGACTGAGTTaGAGTATTTTCAGCATCTTC +
Preference number: 4 (lower is better)
Translates to: LRRTQFLSLFTNVIFRMKNFGLS*SIFSIF
Trigger: GAAGATGCTGAAAATACTTCAACTCAGTCCAAAGTT...TTTCATTCGGAAGATCACATTAGTAAAAAGACTGAGGAATTGAGTTCTTCTCAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS-3UTR TCA 90 bp AGTTTACTTAGTAACAATGCCTTCTCAAGATCTGCTTCAAACATTTCAGATGTCTCATGTGATAAAGTCTaGGAAGAACTCAATTCCTCA +
Preference number: 4 (lower is better)
Translates to: SLLSNNAFSRSASNISDVSCDKV*EELNSS
Trigger: TGAGGAATTGAGTTCTTCTCAGACTTTATCACATGA...GACATCTGAAATGTTTGAAGCAGATCTTGAGAAGGCATTGTTACTAAGTAAACT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS GCA 90 bp CAGTATTTCGACCTTTACCTTTTCCAGGTTCAGAATCAGAGCCACTaGCACTATCCACTTGTAACAGGGCAAAACGAGAAGCGGTGGTGG +
Preference number: 5 (lower is better)
Translates to: QYFDLYLFQVQNQSH*HYPLVTGQNEKRWW
Trigger: CCACCACCGCTTCTCGTTTTGCCCTGTTACAAGTGGATAGTGGCAGTGGCTCTGATTCTGAACCTGGAAAAGGTAAAGGTCGAAATACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000376365.7
ENST00000376371.7
ENST00000388782.8
ENST00000485742.5
CDS-3UTR CAA 90 bp AGATGTCAGATGTGTCCAAGATGGAGTACTTCAGATCCCCTTCCTCTTGACTTCCAGATCCCCTTCCTCTaGACTTCCTCATTGCCTCCT +
Preference number: 5 (lower is better)
Translates to: RCQMCPRWSTSDPLPLDFQIPFL*TSSLPP
Trigger: AGGAGGCAATGAGGAAGTCAAGAGGAAGGGGATCTG...GAAGTCAAGAGGAAGGGGATCTGAAGTACTCCATCTTGGACACATCTGACATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS GCA 90 bp CATTGCCTCCTACTCCCCATCTGCTCATCTCTTTGTCTCCACTCTTaGCAATTTTCTTCTCGTGAATCCTTCTGTACTGGGTTTGACAAT +
Preference number: 5 (lower is better)
Translates to: HCLLLPICSSLCLHS*QFSSRESFCTGFDN
Trigger: ATTGTCAAACCCAGTACAGAAGGATTCACGAGAAGAAAATTGGCAAGAGTGGAGACAAAGAGATGAGCAGATGGGGAGTAGGAGGCAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS-3UTR CAA 90 bp AGATGTCAGATGTGTCCAAGATGGAGTACTTCAGATCCCCTTCCTCTTGACTTCCATCTGCTCATCTCTTaGTCTCCACTCTTGCCAATT +
Preference number: 5 (lower is better)
Translates to: RCQMCPRWSTSDPLPLDFHLLIS*SPLLPI
Trigger: AATTGGCAAGAGTGGAGACAAAGAGATGAGCAGATG...GAAGTCAAGAGGAAGGGGATCTGAAGTACTCCATCTTGGACACATCTGACATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS-3UTR CAA 90 bp AGATGTCAGATGTGTCCAAGATGGAGTACTTCAGATCCCCTTCCTCTTGACTTCCCTTCTGTACTGGGTTaGACAATGGAAGATCATGTT +
Preference number: 5 (lower is better)
Translates to: RCQMCPRWSTSDPLPLDFPSVLG*TMEDHV
Trigger: AACATGATCTTCCATTGTCAAACCCAGTACAGAAGG...GAAGTCAAGAGGAAGGGGATCTGAAGTACTCCATCTTGGACACATCTGACATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS TCA 90 bp TCTCGTGAATCCTTCTGTACTGGGTTTGACAATGGAAGATCATGTTaGGCGTTACAAACAGCATGGGAGGATTTCTGGGGAATTTTCTTA +
Preference number: 5 (lower is better)
Translates to: SRESFCTGFDNGRSC*ALQTAWEDFWGIFL
Trigger: TAAGAAAATTCCCCAGAAATCCTCCCATGCTGTTTGTAACGCTCAACATGATCTTCCATTGTCAAACCCAGTACAGAAGGATTCACGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000376365.7
ENST00000376371.7
ENST00000388782.8
CDS-3UTR CAA 90 bp AGTTTACTTAGTAACAATGCCTTCTCAAGATCTGCTTCAAACATTTCAGATGTCCTCTTGACTTCCTCATaGCCTCCTACTCCCCATCTG +
Preference number: 5 (lower is better)
Translates to: SLLSNNAFSRSASNISDVLLTSS*PPTPHL
Trigger: CAGATGGGGAGTAGGAGGCAATGAGGAAGTCAAGAG...GACATCTGAAATGTTTGAAGCAGATCTTGAGAAGGCATTGTTACTAAGTAAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS GCA 90 bp TCAAACATTTCAGATGTCAGCTGCTCATCTCTTTGTCTCCACTCTTaGCAATTTTCTTCTCGTGAATCCTTCTGTACTGGGTTTGACAAT +
Preference number: 5 (lower is better)
Translates to: SNISDVSCSSLCLHS*QFSSRESFCTGFDN
Trigger: ATTGTCAAACCCAGTACAGAAGGATTCACGAGAAGAAAATTGGCAAGAGTGGAGACAAAGAGATGAGCAGCTGACATCTGAAATGTTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000376365.7
ENST00000376371.7
CDS TCA 90 bp TTTCTACATCTGCTCTGTATTTGTCACTGTCCAATATGCGACTACTaGAAGAACACTAGCAATGTGGCTAGTGTGACTGAGAAAAATGAA +
Preference number: 5 (lower is better)
Translates to: FLHLLCICHCPICDY*KNTSNVASVTEKNE
Trigger: TTCATTTTTCTCAGTCACACTAGCCACATTGCTAGTGTTCTTTCAGTAGTCGCATATTGGACAGTGACAAATACAGAGCAGATGTAGAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376362.1
CDS-3UTR CAA 90 bp GCTCTTCATATTCTAGTTTACTTAGTAACAATGCCTTCTCAAGATCTGCTTCAACAATGGAAGATCATGTaGAGCGTTACAAACAGCATG +
Preference number: 5 (lower is better)
Translates to: ALHILVYLVTMPSQDLLQQWKIM*SVTNSM
Trigger: CATGCTGTTTGTAACGCTCAACATGATCTTCCATTG...TTGAAGCAGATCTTGAGAAGGCATTGTTACTAAGTAAACTAGAATATGAAGAGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS CAA 72 bp TGTGTCCAAGATGGAGTACTTCAGATCCCCTTCCTCTaGACTTCCTCATTGCCTCCTACTCCCCATCTGCTC +
Preference number: 6 (lower is better)
Translates to: CVQDGVLQIPFL*TSSLPPTPHLL
Trigger: GAGCAGATGGGGAGTAGGAGGCAATGAGGAAGTCAAGAGGAAGGGGATCTGAAGTACTCCATCTTGGACACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS CAA 90 bp GATGTCAGATGTGTCCAAGATGGAGTACTTCAGATCCCCTTCCTCTaGACTTCCTCATTGCCTCCTACTCCCCATCTGCTCATCTCTTTG +
Preference number: 6 (lower is better)
Translates to: DVRCVQDGVLQIPFL*TSSLPPTPHLLISL
Trigger: CAAAGAGATGAGCAGATGGGGAGTAGGAGGCAATGAGGAAGTCAAGAGGAAGGGGATCTGAAGTACTCCATCTTGGACACATCTGACATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS GCA 72 bp CTACTCCCCATCTGCTCATCTCTTTGTCTCCACTCTTaGCAATTTTCTTCTCGTGAATCCTTCTGTACTGGG +
Preference number: 6 (lower is better)
Translates to: LLPICSSLCLHS*QFSSRESFCTG
Trigger: CCCAGTACAGAAGGATTCACGAGAAGAAAATTGGCAAGAGTGGAGACAAAGAGATGAGCAGATGGGGAGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000388782.8
CDS TCA 72 bp TCCTTCTGTACTGGGTTTGACAATGGAAGATCATGTTaGGCGTTACAAACAGCATGGGAGGATTTCTGGGGA +
Preference number: 6 (lower is better)
Translates to: SFCTGFDNGRSC*ALQTAWEDFWG
Trigger: TCCCCAGAAATCCTCCCATGCTGTTTGTAACGCTCAACATGATCTTCCATTGTCAAACCCAGTACAGAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376365.7
ENST00000376371.7
ENST00000388782.8
CDS GCA 72 bp TCAGATGTCAGCTGCTCATCTCTTTGTCTCCACTCTTaGCAATTTTCTTCTCGTGAATCCTTCTGTACTGGG +
Preference number: 6 (lower is better)
Translates to: SDVSCSSLCLHS*QFSSRESFCTG
Trigger: CCCAGTACAGAAGGATTCACGAGAAGAAAATTGGCAAGAGTGGAGACAAAGAGATGAGCAGCTGACATCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000376365.7
ENST00000376371.7
CDS CAA 90 bp TCCACTCTTGCCAATTTTCTTCTCGTGAATCCTTCTGTACTGGGTTaGACAATGGAAGATCATGTTGAGCGTTACAAACAGCATGGGAGG +
Preference number: 6 (lower is better)
Translates to: STLANFLLVNPSVLG*TMEDHVERYKQHGR
Trigger: CCTCCCATGCTGTTTGTAACGCTCAACATGATCTTCCATTGTCAAACCCAGTACAGAAGGATTCACGAGAAGAAAATTGGCAAGAGTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376365.7
ENST00000376371.7
ENST00000388782.8
CDS TCA 72 bp CTGCTCTGTATTTGTCACTGTCCAATATGCGACTACTaGAAGAACACTAGCAATGTGGCTAGTGTGACTGAG +
Preference number: 6 (lower is better)
Translates to: LLCICHCPICDY*KNTSNVASVTE
Trigger: CTCAGTCACACTAGCCACATTGCTAGTGTTCTTTCAGTAGTCGCATATTGGACAGTGACAAATACAGAGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376362.1
CDS CAA 72 bp GCCAATTTTCTTCTCGTGAATCCTTCTGTACTGGGTTaGACAATGGAAGATCATGTTGAGCGTTACAAACAG +
Preference number: 6 (lower is better)
Translates to: ANFLLVNPSVLG*TMEDHVERYKQ
Trigger: CTGTTTGTAACGCTCAACATGATCTTCCATTGTCAAACCCAGTACAGAAGGATTCACGAGAAGAAAATTGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376365.7
ENST00000376371.7
ENST00000388782.8
CDS GCA 72 bp AGTACTGTCTGGCAATATACTAGGACTTTCTACATCTaGTCTGTATTTGTCACTGTCCAATATGCGACTACT +
Preference number: 6 (lower is better)
Translates to: STVWQYTRTFYI*SVFVTVQYATT
Trigger: AGTAGTCGCATATTGGACAGTGACAAATACAGAGCAGATGTAGAAAGTCCTAGTATATTGCCAGACAGTACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376362.1
CDS CAA 72 bp GGCAATATACTAGGACTTTCTACATCTGCTCTGTATTaGTCACTGTCCAATATGCGACTACTGAAAGAACAC +
Preference number: 6 (lower is better)
Translates to: GNILGLSTSALY*SLSNMRLLKEH
Trigger: GTGTTCTTTCAGTAGTCGCATATTGGACAGTGACAAATACAGAGCAGATGTAGAAAGTCCTAGTATATTGCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376362.1