Pregenerated sensors for GCSH (Homo sapiens)
Ensembl gene IDs: ENSG00000140905Ensembl transcript IDs: ENST00000315467.9, ENST00000566566.2, ENST00000639137.1, ENST00000639169.1, ENST00000639689.1
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | TTGCCCTTGATCCCAGCTACTGGGAAGCTGAGGCAGAAGAAGTGCTaGAACCCGAGAAGGGGAGGTTGCAGTGCACCGAGATCACGCCAC | + |
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Preference number: 2 (lower is better) Translates to: LPLIPATGKLRQKKC*NPRRGGCSAPRSRH Trigger: GTGGCGTGATCTCGGTGCACTGCAACCTCCCCTTCTCGGGTTCAAGCACTTCTTCTGCCTCAGCTTCCCAGTAGCTGGGATCAAGGGCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| 3UTR-3UTR GCA 90 bp | TTGCCCTTGATCCCAGCTACTGGGAAGCTGAGGCAGAAGAAGTGCTTGAACCCGCACAATATGAGTGGCTaGTTTATGTCTGAAAAAGTA | + |
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Preference number: 2 (lower is better) Translates to: LPLIPATGKLRQKKCLNPHNMSG*FMSEKV Trigger: TACTTTTTCAGACATAAAGCAGCCACTCATATTGTG...CGGGTTCAAGCACTTCTTCTGCCTCAGCTTCCCAGTAGCTGGGATCAAGGGCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| 3UTR-3UTR CCA 90 bp | CATGAGACCCTGACAGATAAATCCTTTGGAGCCTCTATTCATCTACAAAATAGAGGAGTGGTGCGATCTTaGCTCACTATAGACTGCAGC | + |
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Preference number: 2 (lower is better) Translates to: HETLTDKSFGASIHLQNRGVVRS*LTIDCS Trigger: GCTGCAGTCTATAGTGAGCCAAGATCGCACCACTCC...TCTATTTTGTAGATGAATAGAGGCTCCAAAGGATTTATCTGTCAGGGTCTCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| 3UTR-3UTR TCA 90 bp | CATGAGACCCTGACAGATAAATCCTTTGGAGCCTCTATTCATCTACAAAATAGATATAGACTGCAGCCTTaGCCTCCCAGGTTCAAGCAA | + |
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Preference number: 2 (lower is better) Translates to: HETLTDKSFGASIHLQNRYRLQP*PPRFKQ Trigger: TTGCTTGAACCTGGGAGGTCAAGGCTGCAGTCTATA...TCTATTTTGTAGATGAATAGAGGCTCCAAAGGATTTATCTGTCAGGGTCTCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| 3UTR-3UTR TCA 90 bp | AAAGCTTCAGTCCTTGTCCACTTTTATTCCCATGACTTAAGTGGAAACCTGAACCACCATGTGCTATACTaGTCAAAACTTCCACCTTCC | + |
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Preference number: 2 (lower is better) Translates to: KASVLVHFYSHDLSGNLNHHVLY*SKLPPS Trigger: GGAAGGTGGAAGTTTTGATCAGTATAGCACATGGTG...GTTCAGGTTTCCACTTAAGTCATGGGAATAAAAGTGGACAAGGACTGAAGCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000315467.9 |
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| 3UTR-3UTR CCA 90 bp | ATGATCCAAATACACAAGACCAGGTATGTCTTTAACAAATGGAACACTAACTACGGAGTGGTGCGATCTTaGCTCACTATAGACTGCAGC | + |
|
Preference number: 2 (lower is better) Translates to: MIQIHKTRYVFNKWNTNYGVVRS*LTIDCS Trigger: GCTGCAGTCTATAGTGAGCCAAGATCGCACCACTCC...GTAGTTAGTGTTCCATTTGTTAAAGACATACCTGGTCTTGTGTATTTGGATCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| 3UTR-3UTR TCA 90 bp | AAATACACAAGACCAGGTATGTCTTTAACAAATGGAACACTAACTACTGAGGTTTATAGACTGCAGCCTTaGCCTCCCAGGTTCAAGCAA | + |
|
Preference number: 2 (lower is better) Translates to: KYTRPGMSLTNGTLTTEVYRLQP*PPRFKQ Trigger: TTGCTTGAACCTGGGAGGTCAAGGCTGCAGTCTATA...AACCTCAGTAGTTAGTGTTCCATTTGTTAAAGACATACCTGGTCTTGTGTATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| 3UTR-3UTR TCA 90 bp | AAATACACAAGACCAGGTATGTCTTTAACAAATGGAACACTAACTACTGAGGTTTCAGCCATGAGACCCTaGCAGATAAATCCTTTGGAG | + |
|
Preference number: 2 (lower is better) Translates to: KYTRPGMSLTNGTLTTEVSAMRP*QINPLE Trigger: CTCCAAAGGATTTATCTGTCAGGGTCTCATGGCTGA...AACCTCAGTAGTTAGTGTTCCATTTGTTAAAGACATACCTGGTCTTGTGTATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| 3UTR-3UTR TCA 90 bp | AAATACACAAGACCAGGTATGTCTTTAACAAATGGAACACTAACTACTGAGGTTATTAGAAGGGCTAGGTaGCAGACAAAAGAGAACTAC | + |
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Preference number: 2 (lower is better) Translates to: KYTRPGMSLTNGTLTTEVIRRAR*QTKENY Trigger: GTAGTTCTCTTTTGTCTGTCACCTAGCCCTTCTAAT...AACCTCAGTAGTTAGTGTTCCATTTGTTAAAGACATACCTGGTCTTGTGTATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| 3UTR-3UTR TCA 90 bp | AAATACACAAGACCAGGTATGTCTTTAACAAATGGAACACTAACTACTGAGGTTGTAGTAGTAATTCCTTaGGAAATTTCTAGCAACAGC | + |
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Preference number: 2 (lower is better) Translates to: KYTRPGMSLTNGTLTTEVVVVIP*EISSNS Trigger: GCTGTTGCTAGAAATTTCTCAAGGAATTACTACTAC...AACCTCAGTAGTTAGTGTTCCATTTGTTAAAGACATACCTGGTCTTGTGTATTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000639689.1 |
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| 3UTR-3UTR GCA 90 bp | ATGATCCAAATACACAAGACCAGGTATGTCTTTAACAAATGGAACACTAACTACCACAATATGAGTGGCTaGTTTATGTCTGAAAAAGTA | + |
|
Preference number: 2 (lower is better) Translates to: MIQIHKTRYVFNKWNTNYHNMSG*FMSEKV Trigger: TACTTTTTCAGACATAAAGCAGCCACTCATATTGTG...GTAGTTAGTGTTCCATTTGTTAAAGACATACCTGGTCTTGTGTATTTGGATCAT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| 3UTR CCA 72 bp | CTGGGCGTGGTGGCAGTTGCCCTTGATCCCAGCTACTaGGAAGCTGAGGCAGAAGAAGTGCTTGAACCCGAG | + |
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Preference number: 3 (lower is better) Translates to: LGVVAVALDPSY*EAEAEEVLEPE Trigger: CTCGGGTTCAAGCACTTCTTCTGCCTCAGCTTCCCAGTAGCTGGGATCAAGGGCAACTGCCACCACGCCCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| 3UTR-3UTR CAA 90 bp | TTGCCCTTGATCCCAGCTACTGGGAAGCTGAGGCAGAAGAAGTGCTTGAACCCGTGGAGTGGTGCGATCTaGGCTCACTATAGACTGCAG | + |
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Preference number: 3 (lower is better) Translates to: LPLIPATGKLRQKKCLNPWSGAI*AHYRLQ Trigger: CTGCAGTCTATAGTGAGCCAAGATCGCACCACTCCA...CGGGTTCAAGCACTTCTTCTGCCTCAGCTTCCCAGTAGCTGGGATCAAGGGCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| 3UTR GCA 72 bp | TGGAGTGGAGTGGTGCGATCTTGGCTCACTATAGACTaGAGCCTTGACCTCCCAGGTTCAAGCAATTCTCCC | + |
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Preference number: 3 (lower is better) Translates to: WSGVVRSWLTID*SLDLPGSSNSP Trigger: GGGAGAATTGCTTGAACCTGGGAGGTCAAGGCTGCAGTCTATAGTGAGCCAAGATCGCACCACTCCACTCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| 3UTR CCA 72 bp | ATCTCTACCAAAACCACAAAAATTAGCTGGGCGTGGTaGCAGTTGCCCTTGATCCCAGCTACTGGGAAGCTG | + |
|
Preference number: 3 (lower is better) Translates to: ISTKTTKISWAW*QLPLIPATGKL Trigger: CAGCTTCCCAGTAGCTGGGATCAAGGGCAACTGCCACCACGCCCAGCTAATTTTTGTGGTTTTGGTAGAGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR TCA 90 bp | TTGCCCTTGATCCCAGCTACTGGGAAGCTGAGGCAGAAGAAGTGCTTGAACCCGGGTGGCAGTTGCCCTTaGTCCCAGCTACTGGGAAGC | + |
|
Preference number: 4 (lower is better) Translates to: LPLIPATGKLRQKKCLNPGGSCP*SQLLGS Trigger: GCTTCCCAGTAGCTGGGATCAAGGGCAACTGCCACC...CGGGTTCAAGCACTTCTTCTGCCTCAGCTTCCCAGTAGCTGGGATCAAGGGCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR CCA 90 bp | TTGCCCTTGATCCCAGCTACTGGGAAGCTGAGGCAGAAGAAGTGCTTGAACCCGATTAGCTGGGCGTGGTaGCAGTTGCCCTTGATCCCA | + |
|
Preference number: 4 (lower is better) Translates to: LPLIPATGKLRQKKCLNPISWAW*QLPLIP Trigger: TGGGATCAAGGGCAACTGCCACCACGCCCAGCTAAT...CGGGTTCAAGCACTTCTTCTGCCTCAGCTTCCCAGTAGCTGGGATCAAGGGCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR TCA 90 bp | TTGCCCTTGATCCCAGCTACTGGGAAGCTGAGGCAGAAGAAGTGCTTGAACCCGTATAGACTGCAGCCTTaGCCTCCCAGGTTCAAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: LPLIPATGKLRQKKCLNPYRLQP*PPRFKQ Trigger: TTGCTTGAACCTGGGAGGTCAAGGCTGCAGTCTATA...CGGGTTCAAGCACTTCTTCTGCCTCAGCTTCCCAGTAGCTGGGATCAAGGGCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR TCA 90 bp | TTGCCCTTGATCCCAGCTACTGGGAAGCTGAGGCAGAAGAAGTGCTTGAACCCGTCAGCCATGAGACCCTaGCAGATAAATCCTTTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: LPLIPATGKLRQKKCLNPSAMRP*QINPLE Trigger: CTCCAAAGGATTTATCTGTCAGGGTCTCATGGCTGA...CGGGTTCAAGCACTTCTTCTGCCTCAGCTTCCCAGTAGCTGGGATCAAGGGCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR TCA 90 bp | AAATACACAAGACCAGGTATGTCTTTAACAAATGGAACACTAACTACTGAGGTTGGTGGCAGTTGCCCTTaGTCCCAGCTACTGGGAAGC | + |
|
Preference number: 4 (lower is better) Translates to: KYTRPGMSLTNGTLTTEVGGSCP*SQLLGS Trigger: GCTTCCCAGTAGCTGGGATCAAGGGCAACTGCCACC...AACCTCAGTAGTTAGTGTTCCATTTGTTAAAGACATACCTGGTCTTGTGTATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR GCA 90 bp | CATGAGACCCTGACAGATAAATCCTTTGGAGCCTCTATTCATCTACAAAATAGATGGCTCACTATAGACTaGAGCCTTGACCTCCCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: HETLTDKSFGASIHLQNRWLTID*SLDLPG Trigger: ACCTGGGAGGTCAAGGCTGCAGTCTATAGTGAGCCA...TCTATTTTGTAGATGAATAGAGGCTCCAAAGGATTTATCTGTCAGGGTCTCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR GCA 90 bp | CATGAGACCCTGACAGATAAATCCTTTGGAGCCTCTATTCATCTACAAAATAGACTGAGGCAGAAGAAGTaGTTGAACCCGAGAAGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: HETLTDKSFGASIHLQNRLRQKK*LNPRRG Trigger: TCCCCTTCTCGGGTTCAAGCACTTCTTCTGCCTCAG...TCTATTTTGTAGATGAATAGAGGCTCCAAAGGATTTATCTGTCAGGGTCTCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR CCA 90 bp | CATGAGACCCTGACAGATAAATCCTTTGGAGCCTCTATTCATCTACAAAATAGAACCACAAAAATTAGCTaGGCGTGGTGGCAGTTGCCC | + |
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Preference number: 4 (lower is better) Translates to: HETLTDKSFGASIHLQNRTTKIS*AWWQLP Trigger: GGGCAACTGCCACCACGCCCAGCTAATTTTTGTGGT...TCTATTTTGTAGATGAATAGAGGCTCCAAAGGATTTATCTGTCAGGGTCTCATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR GCA 90 bp | TTTTTACCTCCCATGTCACACAATATGAGTGGCTGCTTTATGTCTGAAAAAGTACTGAGGCAGAAGAAGTaGTTGAACCCGAGAAGGGGA | + |
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Preference number: 4 (lower is better) Translates to: FLPPMSHNMSGCFMSEKVLRQKK*LNPRRG Trigger: TCCCCTTCTCGGGTTCAAGCACTTCTTCTGCCTCAG...TACTTTTTCAGACATAAAGCAGCCACTCATATTGTGTGACATGGGAGGTAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR CCA 90 bp | TTTTTACCTCCCATGTCACACAATATGAGTGGCTGCTTTATGTCTGAAAAAGTAGGAGTGGTGCGATCTTaGCTCACTATAGACTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: FLPPMSHNMSGCFMSEKVGVVRS*LTIDCS Trigger: GCTGCAGTCTATAGTGAGCCAAGATCGCACCACTCC...TACTTTTTCAGACATAAAGCAGCCACTCATATTGTGTGACATGGGAGGTAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR CCA 90 bp | AAATACACAAGACCAGGTATGTCTTTAACAAATGGAACACTAACTACTGAGGTTATTAGCTGGGCGTGGTaGCAGTTGCCCTTGATCCCA | + |
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Preference number: 4 (lower is better) Translates to: KYTRPGMSLTNGTLTTEVISWAW*QLPLIP Trigger: TGGGATCAAGGGCAACTGCCACCACGCCCAGCTAAT...AACCTCAGTAGTTAGTGTTCCATTTGTTAAAGACATACCTGGTCTTGTGTATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR TCA 90 bp | CTCTGTCTTTCCTCTTCTTTCTTCAGACCTCGCATGATAGAAAATCAAAGTTGGCACCATGTGCTATACTaGTCAAAACTTCCACCTTCC | + |
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Preference number: 4 (lower is better) Translates to: LCLSSSFFRPRMIENQSWHHVLY*SKLPPS Trigger: GGAAGGTGGAAGTTTTGATCAGTATAGCACATGGTG...CCAACTTTGATTTTCTATCATGCGAGGTCTGAAGAAAGAAGAGGAAAGACAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000315467.9 |
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| CDS-3UTR GCA 90 bp | AAATACACAAGACCAGGTATGTCTTTAACAAATGGAACACTAACTACTGAGGTTTGGCTCACTATAGACTaGAGCCTTGACCTCCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: KYTRPGMSLTNGTLTTEVWLTID*SLDLPG Trigger: ACCTGGGAGGTCAAGGCTGCAGTCTATAGTGAGCCA...AACCTCAGTAGTTAGTGTTCCATTTGTTAAAGACATACCTGGTCTTGTGTATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR CCA 90 bp | TTTTTACCTCCCATGTCACACAATATGAGTGGCTGCTTTATGTCTGAAAAAGTAAAAATTAGCTGGGCGTaGTGGCAGTTGCCCTTGATC | + |
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Preference number: 4 (lower is better) Translates to: FLPPMSHNMSGCFMSEKVKISWA*WQLPLI Trigger: GATCAAGGGCAACTGCCACCACGCCCAGCTAATTTT...TACTTTTTCAGACATAAAGCAGCCACTCATATTGTGTGACATGGGAGGTAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR TCA 90 bp | CTCTGTCTTTCCTCTTCTTTCTTCAGACCTCGCATGATAGAAAATCAAAGTTGGCCACTTTTATTCCCATaGCTTAAGTGGAAACCTGAA | + |
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Preference number: 4 (lower is better) Translates to: LCLSSSFFRPRMIENQSWPLLFP*LKWKPE Trigger: TTCAGGTTTCCACTTAAGTCATGGGAATAAAAGTGG...CCAACTTTGATTTTCTATCATGCGAGGTCTGAAGAAAGAAGAGGAAAGACAGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000315467.9 |
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| CDS-3UTR TCA 90 bp | ATGATCCAAATACACAAGACCAGGTATGTCTTTAACAAATGGAACACTAACTACTCAGCCATGAGACCCTaGCAGATAAATCCTTTGGAG | + |
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Preference number: 4 (lower is better) Translates to: MIQIHKTRYVFNKWNTNYSAMRP*QINPLE Trigger: CTCCAAAGGATTTATCTGTCAGGGTCTCATGGCTGA...GTAGTTAGTGTTCCATTTGTTAAAGACATACCTGGTCTTGTGTATTTGGATCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR GCA 90 bp | TTTTTACCTCCCATGTCACACAATATGAGTGGCTGCTTTATGTCTGAAAAAGTACTTGATCAGCCAACCTaGAACCAAAAGACAACCTTA | + |
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Preference number: 4 (lower is better) Translates to: FLPPMSHNMSGCFMSEKVLDQPT*NQKTTL Trigger: TAAGGTTGTCTTTTGGTTGCAGGTTGGCTGATCAAG...TACTTTTTCAGACATAAAGCAGCCACTCATATTGTGTGACATGGGAGGTAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR TCA 90 bp | CATGAGACCCTGACAGATAAATCCTTTGGAGCCTCTATTCATCTACAAAATAGAGTAGTAGTAATTCCTTaGGAAATTTCTAGCAACAGC | + |
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Preference number: 4 (lower is better) Translates to: HETLTDKSFGASIHLQNRVVVIP*EISSNS Trigger: GCTGTTGCTAGAAATTTCTCAAGGAATTACTACTAC...TCTATTTTGTAGATGAATAGAGGCTCCAAAGGATTTATCTGTCAGGGTCTCATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR GCA 90 bp | ATGATCCAAATACACAAGACCAGGTATGTCTTTAACAAATGGAACACTAACTACCTTGATCAGCCAACCTaGAACCAAAAGACAACCTTA | + |
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Preference number: 4 (lower is better) Translates to: MIQIHKTRYVFNKWNTNYLDQPT*NQKTTL Trigger: TAAGGTTGTCTTTTGGTTGCAGGTTGGCTGATCAAG...GTAGTTAGTGTTCCATTTGTTAAAGACATACCTGGTCTTGTGTATTTGGATCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR TCA 90 bp | TTTTTACCTCCCATGTCACACAATATGAGTGGCTGCTTTATGTCTGAAAAAGTAGTAGTAGTAATTCCTTaGGAAATTTCTAGCAACAGC | + |
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Preference number: 4 (lower is better) Translates to: FLPPMSHNMSGCFMSEKVVVVIP*EISSNS Trigger: GCTGTTGCTAGAAATTTCTCAAGGAATTACTACTAC...TACTTTTTCAGACATAAAGCAGCCACTCATATTGTGTGACATGGGAGGTAAAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR GCA 90 bp | CATGAGACCCTGACAGATAAATCCTTTGGAGCCTCTATTCATCTACAAAATAGACACAATATGAGTGGCTaGTTTATGTCTGAAAAAGTA | + |
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Preference number: 4 (lower is better) Translates to: HETLTDKSFGASIHLQNRHNMSG*FMSEKV Trigger: TACTTTTTCAGACATAAAGCAGCCACTCATATTGTG...TCTATTTTGTAGATGAATAGAGGCTCCAAAGGATTTATCTGTCAGGGTCTCATG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR GCA 90 bp | TTTTTACCTCCCATGTCACACAATATGAGTGGCTGCTTTATGTCTGAAAAAGTACACAATATGAGTGGCTaGTTTATGTCTGAAAAAGTA | + |
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Preference number: 4 (lower is better) Translates to: FLPPMSHNMSGCFMSEKVHNMSG*FMSEKV Trigger: TACTTTTTCAGACATAAAGCAGCCACTCATATTGTG...TACTTTTTCAGACATAAAGCAGCCACTCATATTGTGTGACATGGGAGGTAAAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 3 transcripts: ENST00000566566.2 ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR CAA 90 bp | TTGCCCTTGATCCCAGCTACTGGGAAGCTGAGGCAGAAGAAGTGCTTGAACCCGTGTAATCCCAGTACTTaGGGAAGCGAAGGCAAGCAA | + |
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Preference number: 5 (lower is better) Translates to: LPLIPATGKLRQKKCLNPCNPST*GSEGKQ Trigger: TTGCTTGCCTTCGCTTCCCAAAGTACTGGGATTACA...CGGGTTCAAGCACTTCTTCTGCCTCAGCTTCCCAGTAGCTGGGATCAAGGGCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR CAA 90 bp | CATGAGACCCTGACAGATAAATCCTTTGGAGCCTCTATTCATCTACAAAATAGATGGAGTGGTGCGATCTaGGCTCACTATAGACTGCAG | + |
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Preference number: 5 (lower is better) Translates to: HETLTDKSFGASIHLQNRWSGAI*AHYRLQ Trigger: CTGCAGTCTATAGTGAGCCAAGATCGCACCACTCCA...TCTATTTTGTAGATGAATAGAGGCTCCAAAGGATTTATCTGTCAGGGTCTCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR CAA 90 bp | CATGAGACCCTGACAGATAAATCCTTTGGAGCCTCTATTCATCTACAAAATAGAAGGCAAGCAAATCACTaGAGGCTAGGAGCTCTAGAC | + |
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Preference number: 5 (lower is better) Translates to: HETLTDKSFGASIHLQNRRQANH*RLGALD Trigger: GTCTAGAGCTCCTAGCCTCAAGTGATTTGCTTGCCT...TCTATTTTGTAGATGAATAGAGGCTCCAAAGGATTTATCTGTCAGGGTCTCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR CAA 90 bp | ATGATCCAAATACACAAGACCAGGTATGTCTTTAACAAATGGAACACTAACTACAGGCAAGCAAATCACTaGAGGCTAGGAGCTCTAGAC | + |
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Preference number: 5 (lower is better) Translates to: MIQIHKTRYVFNKWNTNYRQANH*RLGALD Trigger: GTCTAGAGCTCCTAGCCTCAAGTGATTTGCTTGCCT...GTAGTTAGTGTTCCATTTGTTAAAGACATACCTGGTCTTGTGTATTTGGATCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR CAA 90 bp | GCTCATAAAGCTTCAGTCCTTGTCCACTTTTATTCCCATGACTTAAGTGGAAACATAAAGCTTCAGTCCTaGTCCACTTTTATTCCCATG | + |
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Preference number: 5 (lower is better) Translates to: AHKASVLVHFYSHDLSGNIKLQS*STFIPM Trigger: CATGGGAATAAAAGTGGACAAGGACTGAAGCTTTAT...GTTTCCACTTAAGTCATGGGAATAAAAGTGGACAAGGACTGAAGCTTTATGAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000315467.9 |
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| CDS-3UTR CAA 90 bp | ATGATCCAAATACACAAGACCAGGTATGTCTTTAACAAATGGAACACTAACTACTGTAATCCCAGTACTTaGGGAAGCGAAGGCAAGCAA | + |
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Preference number: 5 (lower is better) Translates to: MIQIHKTRYVFNKWNTNYCNPST*GSEGKQ Trigger: TTGCTTGCCTTCGCTTCCCAAAGTACTGGGATTACA...GTAGTTAGTGTTCCATTTGTTAAAGACATACCTGGTCTTGTGTATTTGGATCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR CAA 90 bp | TTTTTACCTCCCATGTCACACAATATGAGTGGCTGCTTTATGTCTGAAAAAGTAAACCTAATCCTAGCTTaGCCATTTATCAGCCATGAG | + |
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Preference number: 5 (lower is better) Translates to: FLPPMSHNMSGCFMSEKVNLILA*PFISHE Trigger: CTCATGGCTGATAAATGGCAAAGCTAGGATTAGGTT...TACTTTTTCAGACATAAAGCAGCCACTCATATTGTGTGACATGGGAGGTAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR CAA 90 bp | ATGATCCAAATACACAAGACCAGGTATGTCTTTAACAAATGGAACACTAACTACAACCTAATCCTAGCTTaGCCATTTATCAGCCATGAG | + |
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Preference number: 5 (lower is better) Translates to: MIQIHKTRYVFNKWNTNYNLILA*PFISHE Trigger: CTCATGGCTGATAAATGGCAAAGCTAGGATTAGGTT...GTAGTTAGTGTTCCATTTGTTAAAGACATACCTGGTCTTGTGTATTTGGATCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS-3UTR CAA 90 bp | AAATACACAAGACCAGGTATGTCTTTAACAAATGGAACACTAACTACTGAGGTTCTGAGCGCCTCAATCTaGTATTCTTTACAAAAACCA | + |
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Preference number: 5 (lower is better) Translates to: KYTRPGMSLTNGTLTTEVLSASI*YSLQKP Trigger: TGGTTTTTGTAAAGAATACAAGATTGAGGCGCTCAG...AACCTCAGTAGTTAGTGTTCCATTTGTTAAAGACATACCTGGTCTTGTGTATTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000639169.1 ENST00000639689.1 |
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| CDS TCA 72 bp | AAACAGCAGTACCATTTAAGCAAAGATGGCTTCATCTaGACACCTTGTGCATCTTTTGGAGATTGGATTATC | + |
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Preference number: 6 (lower is better) Translates to: KQQYHLSKDGFI*TPCASFGDWII Trigger: GATAATCCAATCTCCAAAAGATGCACAAGGTGTTCAGATGAAGCCATCTTTGCTTAAATGGTACTGCTGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000639137.1 |
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| CDS CAA 72 bp | TTTCAAAAGACTTTCCCAGAATTTCTGTTTGACCTGTaGACACTACCTTTAAATAGTGCATGGCTCAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: FQKTFPEFLFDL*TLPLNSAWLRK Trigger: TTTCCTGAGCCATGCACTATTTAAAGGTAGTGTCAACAGGTCAAACAGAAATTCTGGGAAAGTCTTTTGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000639137.1 |
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