Pregenerated sensors for GAS5 (Homo sapiens)
Ensembl gene IDs: ENSG00000234741Ensembl transcript IDs: ENST00000412059.5, ENST00000414075.5, ENST00000416952.5, ENST00000421068.5, ENST00000422183.5, ENST00000422207.5, ENST00000430245.5, ENST00000431268.5, ENST00000432536.5, ENST00000434796.5, ENST00000436285.5, ENST00000436656.5, ENST00000443799.5, ENST00000444470.5, ENST00000448718.5, ENST00000449289.5, ENST00000449589.5, ENST00000450589.5, ENST00000451607.5, ENST00000452197.5, ENST00000454068.5, ENST00000454813.1, ENST00000456293.5, ENST00000456812.6, ENST00000650796.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AAGCACGTGGACTACCACCGACAGCCTTTCATGAGAGCGGACGGCTaGTGGAGGCTCGGGTCACGGCCCTTAACAATAGCTTACTCGGGT | + |
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Preference number: 5 (lower is better) Translates to: KHVDYHRQPFMRADG*WRLGSRPLTIAYSG Trigger: ACCCGAGTAAGCTATTGTTAAGGGCCGTGACCCGAGCCTCCATCAGCCGTCCGCTCTCATGAAAGGCTGTCGGTGGTAGTCCACGTGCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000432536.5 ENST00000451607.5 |
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| CDS TCA 90 bp | CTGATGGAGGCTCGGGTCACGGCCCTTAACAATAGCTTACTCGGGTaGCTCGGCATGTGCCACCATCAGAGCGGTTGGCATTCATCATTA | + |
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Preference number: 5 (lower is better) Translates to: LMEARVTALNNSLLG*LGMCHHQSGWHSSL Trigger: TAATGATGAATGCCAACCGCTCTGATGGTGGCACATGCCGAGTCACCCGAGTAAGCTATTGTTAAGGGCCGTGACCCGAGCCTCCATCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451607.5 |
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| CDS TCA 72 bp | CACTTAAGCACGTGGACTACCACCGACAGCCTTTCATaGGAGCGGACGGCTGATGGAGGCTCGGGTCACGGC | + |
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Preference number: 6 (lower is better) Translates to: HLSTWTTTDSLS*ERTADGGSGHG Trigger: GCCGTGACCCGAGCCTCCATCAGCCGTCCGCTCTCATGAAAGGCTGTCGGTGGTAGTCCACGTGCTTAAGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000432536.5 ENST00000451607.5 |
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| CDS TCA 72 bp | GACTACCACCGACAGCCTTTCATGAGAGCGGACGGCTaGTGGAGGCTCGGGTCACGGCCCTTAACAATAGCT | + |
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Preference number: 6 (lower is better) Translates to: DYHRQPFMRADG*WRLGSRPLTIA Trigger: AGCTATTGTTAAGGGCCGTGACCCGAGCCTCCATCAGCCGTCCGCTCTCATGAAAGGCTGTCGGTGGTAGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000432536.5 ENST00000451607.5 |
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| CDS TCA 72 bp | GCTCGGGTCACGGCCCTTAACAATAGCTTACTCGGGTaGCTCGGCATGTGCCACCATCAGAGCGGTTGGCAT | + |
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Preference number: 6 (lower is better) Translates to: ARVTALNNSLLG*LGMCHHQSGWH Trigger: ATGCCAACCGCTCTGATGGTGGCACATGCCGAGTCACCCGAGTAAGCTATTGTTAAGGGCCGTGACCCGAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451607.5 |
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| CDS GCA 72 bp | CAGAAGTTTGAGGCTGTAGTAAGCTTCAAAGGCCACTaGACTCTAGCTTGGGTGAGGCAAGACCCTGTCTCA | + |
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Preference number: 6 (lower is better) Translates to: QKFEAVVSFKGH*TLAWVRQDPVS Trigger: TGAGACAGGGTCTTGCCTCACCCAAGCTAGAGTGCAGTGGCCTTTGAAGCTTACTACAGCCTCAAACTTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000422183.5 ENST00000434796.5 ENST00000456812.6 ENST00000650796.1 |
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| CDS GCA 72 bp | CAGAAGTTTGAGGCTGTAGTAAGCTTCAAAGGCCACTaGACTCTAGCTTGGGTGAGGCAAGACCCTTTCAAG | + |
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Preference number: 6 (lower is better) Translates to: QKFEAVVSFKGH*TLAWVRQDPFK Trigger: CTTGAAAGGGTCTTGCCTCACCCAAGCTAGAGTGCAGTGGCCTTTGAAGCTTACTACAGCCTCAAACTTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 14 transcripts: ENST00000412059.5 ENST00000414075.5 ENST00000422207.5 ENST00000430245.5 ENST00000431268.5 ENST00000436285.5 ENST00000436656.5 ENST00000444470.5 ENST00000448718.5 ENST00000449289.5 ENST00000450589.5 ENST00000452197.5 ENST00000454068.5 ENST00000454813.1 |
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| CDS CAA 72 bp | TTGTGCCGTAGGAAGTTTGCCCAGTTACCTGCTTACTaGGATACAGTTTCACTTACCATTTCAACTTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: LCRRKFAQLPAY*DTVSLTISTSS Trigger: GCTGGAAGTTGAAATGGTAAGTGAAACTGTATCCAAGTAAGCAGGTAACTGGGCAAACTTCCTACGGCACAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000421068.5 ENST00000443799.5 ENST00000456293.5 ENST00000650796.1 |
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| CDS CAA 72 bp | CTTAGGTGTACTCTCTATGTTCCCCAACTCACCATTTaGGGTGCCTCAGTTAAGATAATGGTGGTTAAGATC | + |
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Preference number: 6 (lower is better) Translates to: LRCTLYVPQLTI*GASVKIMVVKI Trigger: GATCTTAACCACCATTATCTTAACTGAGGCACCCAAAATGGTGAGTTGGGGAACATAGAGAGTACACCTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000416952.5 ENST00000421068.5 ENST00000431268.5 ENST00000443799.5 ENST00000449589.5 ENST00000650796.1 |
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| CDS CAA 90 bp | TCATGTGAACTTAGGTGTACTCTCTATGTTCCCCAACTCACCATTTaGGGTGCCTCAGTTAAGATAATGGTGGTTAAGATCCTCATCATT | + |
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Preference number: 6 (lower is better) Translates to: SCELRCTLYVPQLTI*GASVKIMVVKILII Trigger: AATGATGAGGATCTTAACCACCATTATCTTAACTGAGGCACCCAAAATGGTGAGTTGGGGAACATAGAGAGTACACCTAAGTTCACATGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000416952.5 ENST00000421068.5 ENST00000431268.5 ENST00000443799.5 ENST00000449589.5 ENST00000650796.1 |
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| CDS GCA 72 bp | TTGATCAACATCATTACACAAACCCCGTTCCAAACATaGTCAAGGAAAACACATAAACACTGTTCCAGACAT | + |
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Preference number: 6 (lower is better) Translates to: LINIITQTPFQT*SRKTHKHCSRH Trigger: ATGTCTGGAACAGTGTTTATGTGTTTTCCTTGAGCATGTTTGGAACGGGGTTTGTGTAATGATGTTGATCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650796.1 |
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