Pregenerated sensors for FAHD2A (Homo sapiens)
Ensembl gene IDs: ENSG00000115042Ensembl transcript IDs: ENST00000233379.9, ENST00000418606.1, ENST00000445649.1, ENST00000447036.5
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GCTAGAAATGATGCAAGCAGGAAAATCATTTGCTTGTGGACCTACTATGTGTCAAAGTCACCCAGGTCATaGTCTGCTTCTGGAGGGGCT | + |
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Preference number: 2 (lower is better) Translates to: ARNDASRKIICLWTYYVSKSPRS*SASGGA Trigger: AGCCCCTCCAGAAGCAGAGCATGACCTGGGTGACTT...TGACACATAGTAGGTCCACAAGCAAATGATTTTCCTGCTTGCATCATTTCTAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000233379.9 |
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| 3UTR-3UTR TCA 90 bp | GCTAGAAATGATGCAAGCAGGAAAATCATTTGCTTGTGGACCTACTATGTGTCATTTGCACTCAAACACTaGGGCCTAAGGGGTCAGAGG | + |
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Preference number: 2 (lower is better) Translates to: ARNDASRKIICLWTYYVSFALKH*GLRGQR Trigger: CCTCTGACCCCTTAGGCCTCAGTGTTTGAGTGCAAA...TGACACATAGTAGGTCCACAAGCAAATGATTTTCCTGCTTGCATCATTTCTAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000233379.9 |
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| 3UTR-3UTR CCA 90 bp | GCTAGAAATGATGCAAGCAGGAAAATCATTTGCTTGTGGACCTACTATGTGTCAGCTCATCCTTCTAGGTaGGGTATTGGGGCTGCTTTG | + |
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Preference number: 2 (lower is better) Translates to: ARNDASRKIICLWTYYVSAHPSR*GIGAAL Trigger: CAAAGCAGCCCCAATACCCCACCTAGAAGGATGAGC...TGACACATAGTAGGTCCACAAGCAAATGATTTTCCTGCTTGCATCATTTCTAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000233379.9 |
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| 3UTR-3UTR GCA 90 bp | GCTAGAAATGATGCAAGCAGGAAAATCATTTGCTTGTGGACCTACTATGTGTCACAGCAGAAGCAAAGCTaGTGCTTTGACCTGACGAAT | + |
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Preference number: 2 (lower is better) Translates to: ARNDASRKIICLWTYYVSQQKQS*CFDLTN Trigger: ATTCGTCAGGTCAAAGCAGCAGCTTTGCTTCTGCTG...TGACACATAGTAGGTCCACAAGCAAATGATTTTCCTGCTTGCATCATTTCTAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000233379.9 |
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| 3UTR-3UTR GCA 90 bp | GCTAGAAATGATGCAAGCAGGAAAATCATTTGCTTGTGGACCTACTATGTGTCACAGAAGCAAAGCTGCTaGTTTGACCTGACGAATTTA | + |
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Preference number: 2 (lower is better) Translates to: ARNDASRKIICLWTYYVSQKQSC*FDLTNL Trigger: TAAATTCGTCAGGTCAAAGCAGCAGCTTTGCTTCTG...TGACACATAGTAGGTCCACAAGCAAATGATTTTCCTGCTTGCATCATTTCTAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000233379.9 |
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| 3UTR TCA 72 bp | CACGGGCCGCCTCGCAGCCGGCATGGTGAGGTGAGATaGGTTGAGGTAAGCTCGCAGCTCCTTGGTGCCAGC | + |
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Preference number: 3 (lower is better) Translates to: HGPPRSRHGEVR*VEVSSQLLGAS Trigger: GCTGGCACCAAGGAGCTGCGAGCTTACCTCAACTCATCTCACCTCACCATGCCGGCTGCGAGGCGGCCCGTG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000233379.9 |
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| CDS-3UTR TCA 90 bp | GCTAGAAATGATGCAAGCAGGAAAATCATTTGCTTGTGGACCTACTATGTGTCAAGGGCGGCGGGCGCCTaGGCACTGCCACCAGTGACC | + |
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Preference number: 4 (lower is better) Translates to: ARNDASRKIICLWTYYVSRAAGA*ALPPVT Trigger: GGTCACTGGTGGCAGTGCTCAGGCGCCCGCCGCCCT...TGACACATAGTAGGTCCACAAGCAAATGATTTTCCTGCTTGCATCATTTCTAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000233379.9 |
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| CDS-3UTR CCA 90 bp | GCTAGAAATGATGCAAGCAGGAAAATCATTTGCTTGTGGACCTACTATGTGTCAACCAGCATCAGAGCCTaGCCGCGGCGGCCGATCTTC | + |
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Preference number: 4 (lower is better) Translates to: ARNDASRKIICLWTYYVSTSIRA*PRRPIF Trigger: GAAGATCGGCCGCCGCGGCCAGGCTCTGATGCTGGT...TGACACATAGTAGGTCCACAAGCAAATGATTTTCCTGCTTGCATCATTTCTAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000233379.9 |
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| CDS-3UTR GCA 90 bp | GCTAGAAATGATGCAAGCAGGAAAATCATTTGCTTGTGGACCTACTATGTGTCAGGCGGCCGATCTTCCTaGGCTGTAGGGTTAGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: ARNDASRKIICLWTYYVSGGRSS*AVGLEL Trigger: GAGCTCTAACCCTACAGCGCAGGAAGATCGGCCGCC...TGACACATAGTAGGTCCACAAGCAAATGATTTTCCTGCTTGCATCATTTCTAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000233379.9 |
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| CDS-3UTR CCA 90 bp | GCTAGAAATGATGCAAGCAGGAAAATCATTTGCTTGTGGACCTACTATGTGTCATCCCAATCTACCTCCTaGCTCTGTGGTGGGAGGACC | + |
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Preference number: 4 (lower is better) Translates to: ARNDASRKIICLWTYYVSSQSTS*LCGGRT Trigger: GGTCCTCCCACCACAGAGCCAGGAGGTAGATTGGGA...TGACACATAGTAGGTCCACAAGCAAATGATTTTCCTGCTTGCATCATTTCTAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000233379.9 |
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| CDS-3UTR TCA 90 bp | GCTAGAAATGATGCAAGCAGGAAAATCATTTGCTTGTGGACCTACTATGTGTCAGTGTCAGGCACCTGCTaGACAGTAGCATTTGATGCT | + |
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Preference number: 4 (lower is better) Translates to: ARNDASRKIICLWTYYVSVSGTC*TVAFDA Trigger: AGCATCAAATGCTACTGTTCAGCAGGTGCCTGACAC...TGACACATAGTAGGTCCACAAGCAAATGATTTTCCTGCTTGCATCATTTCTAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000233379.9 |
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| CDS-3UTR CCA 90 bp | GCTAGAAATGATGCAAGCAGGAAAATCATTTGCTTGTGGACCTACTATGTGTCAAAAATCATTTGCTTGTaGACCTACTATGTGTCAGGC | + |
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Preference number: 4 (lower is better) Translates to: ARNDASRKIICLWTYYVSKIICL*TYYVSG Trigger: GCCTGACACATAGTAGGTCCACAAGCAAATGATTTT...TGACACATAGTAGGTCCACAAGCAAATGATTTTCCTGCTTGCATCATTTCTAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000233379.9 |
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| CDS-3UTR CAA 90 bp | GCTAGAAATGATGCAAGCAGGAAAATCATTTGCTTGTGGACCTACTATGTGTCACAGCCAGGGCTCTTCTaGCCACTGAGAGGGTGGCCT | + |
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Preference number: 5 (lower is better) Translates to: ARNDASRKIICLWTYYVSQPGLF*PLRGWP Trigger: AGGCCACCCTCTCAGTGGCAAGAAGAGCCCTGGCTG...TGACACATAGTAGGTCCACAAGCAAATGATTTTCCTGCTTGCATCATTTCTAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000233379.9 |
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| CDS-3UTR CAA 90 bp | GCTAGAAATGATGCAAGCAGGAAAATCATTTGCTTGTGGACCTACTATGTGTCAACTTCATCCCCCTTCTaGAGAAAGACAGGAGGTTTC | + |
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Preference number: 5 (lower is better) Translates to: ARNDASRKIICLWTYYVSTSSPF*RKTGGF Trigger: GAAACCTCCTGTCTTTCTCAAGAAGGGGGATGAAGT...TGACACATAGTAGGTCCACAAGCAAATGATTTTCCTGCTTGCATCATTTCTAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000233379.9 |
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| CDS GCA 72 bp | AGGCTCGTCCTACCTGGCCGCGGCGGCCGATCTTCCTaGGCTGTAGGGTTAGAGCTCGCGGGGCCGAAGGTC | + |
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Preference number: 6 (lower is better) Translates to: RLVLPGRGGRSS*AVGLELAGPKV Trigger: GACCTTCGGCCCCGCGAGCTCTAACCCTACAGCGCAGGAAGATCGGCCGCCGCGGCCAGGTAGGACGAGCCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418606.1 ENST00000445649.1 |
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| CDS GCA 72 bp | GTGCTTGGCTCTGCTGGCCGCGGCGGCCGATCTTCCTaGGCTGTAGGGTTAGAGCTCGCGGGGCCGAAGGTC | + |
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Preference number: 6 (lower is better) Translates to: VLGSAGRGGRSS*AVGLELAGPKV Trigger: GACCTTCGGCCCCGCGAGCTCTAACCCTACAGCGCAGGAAGATCGGCCGCCGCGGCCAGCAGAGCCAAGCAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447036.5 |
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| CDS CCA 72 bp | ACTGTGCTTGGCTCTGACAGGTCCGCCCCGTCTGTGTaGTCAGAAGCGGCTGGGGATCCGGTACTAGTTCTG | + |
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Preference number: 6 (lower is better) Translates to: TVLGSDRSAPSV*SEAAGDPVLVL Trigger: CAGAACTAGTACCGGATCCCCAGCCGCTTCTGACCACACAGACGGGGCGGACCTGTCAGAGCCAAGCACAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000418606.1 |
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| CDS CCA 72 bp | ACACCAGCATCAGAGCACAGGTCCGCCCCGTCTGTGTaGTCAGAAGCGGCTGGGGATCCGGTACTAGTTCTG | + |
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Preference number: 6 (lower is better) Translates to: TPASEHRSAPSV*SEAAGDPVLVL Trigger: CAGAACTAGTACCGGATCCCCAGCCGCTTCTGACCACACAGACGGGGCGGACCTGTGCTCTGATGCTGGTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445649.1 |
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