Pregenerated sensors for EXOSC8 (Homo sapiens)
Ensembl gene IDs: ENSG00000120699Ensembl transcript IDs: ENST00000239893.9, ENST00000389704.4, ENST00000474661.5, ENST00000489088.5, ENST00000490537.6
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CAACAGAGTTTGCCTTCCTCATCCATTACTATTGTTAAGGTTCCTGTTGCCAGAACATCTGCAATGAACTaGCTAGCCACTTGGGCCTCT | + |
|
Preference number: 2 (lower is better) Translates to: QQSLPSSSITIVKVPVARTSAMN*LATWAS Trigger: AGAGGCCCAAGTGGCTAGCCAGTTCATTGCAGATGT...TCTGGCAACAGGAACCTTAACAATAGTAATGGATGAGGAAGGCAAACTCTGTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000239893.9 |
||
| 3UTR-3UTR TCA 90 bp | CAACAGAGTTTGCCTTCCTCATCCATTACTATTGTTAAGGTTCCTGTTGCCAGACGTAGTCGAGGCAAATaGGATCACAGTATAGAACCC | + |
|
Preference number: 2 (lower is better) Translates to: QQSLPSSSITIVKVPVARRSRGK*DHSIEP Trigger: GGGTTCTATACTGTGATCTCATTTGCCTCGACTACG...TCTGGCAACAGGAACCTTAACAATAGTAATGGATGAGGAAGGCAAACTCTGTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000239893.9 |
||
| CDS-3UTR TCA 90 bp | GAACACAGGGGTGGTAGATCCACATTAGGAACAACGTATCCTTTATCAGGGGCACGTAGTCGAGGCAAATaGGATCACAGTATAGAACCC | + |
|
Preference number: 4 (lower is better) Translates to: EHRGGRSTLGTTYPLSGARSRGK*DHSIEP Trigger: GGGTTCTATACTGTGATCTCATTTGCCTCGACTACG...TGCCCCTGATAAAGGATACGTTGTTCCTAATGTGGATCTACCACCCCTGTGTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239893.9 |
||
| CDS-3UTR GCA 90 bp | GAACACAGGGGTGGTAGATCCACATTAGGAACAACGTATCCTTTATCAGGGGCAATTTTCAATGACATCTaGAATGAACTGGCTAGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: EHRGGRSTLGTTYPLSGAIFNDI*NELASH Trigger: GTGGCTAGCCAGTTCATTGCAGATGTCATTGAAAAT...TGCCCCTGATAAAGGATACGTTGTTCCTAATGTGGATCTACCACCCCTGTGTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000239893.9 |
||
| CDS-3UTR GCA 90 bp | GAACACAGGGGTGGTAGATCCACATTAGGAACAACGTATCCTTTATCAGGGGCAGAAGACAACAGAGTTTaGCTTCCTCATCCATTACTA | + |
|
Preference number: 4 (lower is better) Translates to: EHRGGRSTLGTTYPLSGAEDNRV*LPHPLL Trigger: TAGTAATGGATGAGGAAGGCAAACTCTGTTGTCTTC...TGCCCCTGATAAAGGATACGTTGTTCCTAATGTGGATCTACCACCCCTGTGTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239893.9 |
||
| CDS-3UTR TCA 90 bp | GGTAGATCCACATTAGGAACAACGTATCCTTTATCAGGGGCATCTGTTGATGGTATCTGCGGTACTAATTaGACCGATGTTGACAGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: GRSTLGTTYPLSGASVDGICGTN*TDVDSC Trigger: ACAACTGTCAACATCGGTTCAATTAGTACCGCAGAT...ACCATCAACAGATGCCCCTGATAAAGGATACGTTGTTCCTAATGTGGATCTACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239893.9 |
||
| CDS GCA 90 bp | CTCGACCTCTCCCAGACTCTCCGGGACCTGCAGCCGCTGCAGTTCTaGTCCACCCAGGGAGGTCTCGAGCCCCCAGAAGGGGTGTGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: LDLSQTLRDLQPLQF*STQGGLEPPEGVCS Trigger: GGAGCACACCCCTTCTGGGGGCTCGAGACCTCCCTGGGTGGAGCAGAACTGCAGCGGCTGCAGGTCCCGGAGAGTCTGGGAGAGGTCGAG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000489088.5 |
||
| CDS GCA 90 bp | CTGTCAACCTCGACCTCTCCCAGACTCTCCGGGACCTGCAGCCGCTaGAGTTCTGCTCCACCCAGGGAGGTCTCGAGCCCCCAGAAGGGG | + |
|
Preference number: 5 (lower is better) Translates to: LSTSTSPRLSGTCSR*SSAPPREVSSPQKG Trigger: CCCCTTCTGGGGGCTCGAGACCTCCCTGGGTGGAGCAGAACTGCAGCGGCTGCAGGTCCCGGAGAGTCTGGGAGAGGTCGAGGTTGACAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000489088.5 |
||
| CDS GCA 90 bp | CCACCTCCTCTGTCAACCTCGACCTCTCCCAGACTCTCCGGGACCTaGAGCCGCTGCAGTTCTGCTCCACCCAGGGAGGTCTCGAGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: PPPLSTSTSPRLSGT*SRCSSAPPREVSSP Trigger: GGGGCTCGAGACCTCCCTGGGTGGAGCAGAACTGCAGCGGCTGCAGGTCCCGGAGAGTCTGGGAGAGGTCGAGGTTGACAGAGGAGGTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000489088.5 |
||
| CDS-3UTR CAA 90 bp | GGTAGATCCACATTAGGAACAACGTATCCTTTATCAGGGGCATCTGTTGATGGTGAACTGGCTAGCCACTaGGGCCTCTTCTCCAGGAGG | + |
|
Preference number: 5 (lower is better) Translates to: GRSTLGTTYPLSGASVDGELASH*GLFSRR Trigger: CCTCCTGGAGAAGAGGCCCAAGTGGCTAGCCAGTTC...ACCATCAACAGATGCCCCTGATAAAGGATACGTTGTTCCTAATGTGGATCTACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000239893.9 |
||
| CDS-3UTR CAA 90 bp | GGTAGATCCACATTAGGAACAACGTATCCTTTATCAGGGGCATCTGTTGATGGTACGGCAGTTCTCTTTTaGAACCCAGCCGCCATCTTC | + |
|
Preference number: 5 (lower is better) Translates to: GRSTLGTTYPLSGASVDGTAVLF*NPAAIF Trigger: GAAGATGGCGGCTGGGTTCAAAAAGAGAACTGCCGT...ACCATCAACAGATGCCCCTGATAAAGGATACGTTGTTCCTAATGTGGATCTACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000239893.9 |
||
| CDS GCA 90 bp | CTCCAGTTAGCCCACTTCCACCTGGTTTGTGAAGACAACAGAGTTTaGCTTCCTCATCCATTACTATTGTTAAGGTTCCTGTTGCCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: LQLAHFHLVCEDNRV*LPHPLLLLRFLLPD Trigger: ATCTGGCAACAGGAACCTTAACAATAGTAATGGATGAGGAAGGCAAACTCTGTTGTCTTCACAAACCAGGTGGAAGTGGGCTAACTGGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000389704.4 ENST00000490537.6 |
||
| CDS GCA 90 bp | AGAATCTTAATTTGTTCTCCAGATGATAGAGCAAGATTTAGGAACTaGTGCTTTAGTGGTAAAGAGCAAAAGCTCAGCTGGGCGCGGTGG | + |
|
Preference number: 5 (lower is better) Translates to: RILICSPDDRARFRN*CFSGKEQKLSWARW Trigger: CCACCGCGCCCAGCTGAGCTTTTGCTCTTTACCACTAAAGCAGCAGTTCCTAAATCTTGCTCTATCATCTGGAGAACAAATTAAGATTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490537.6 |
||
| CDS-3UTR CAA 90 bp | CAACAGAGTTTGCCTTCCTCATCCATTACTATTGTTAAGGTTCCTGTTGCCAGACCTCATCCATTACTATaGTTAAGGTTCCTGTTGCCA | + |
|
Preference number: 5 (lower is better) Translates to: QQSLPSSSITIVKVPVARPHPLL*LRFLLP Trigger: TGGCAACAGGAACCTTAACAATAGTAATGGATGAGG...TCTGGCAACAGGAACCTTAACAATAGTAATGGATGAGGAAGGCAAACTCTGTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000239893.9 |
||
| CDS TCA 72 bp | CGGAGACCACAGATGTTTTCGTTTGCACCCTTTAGTTaGACCCAGCCGCCATCTTCCCGCCCGCGCGTCTGC | + |
|
Preference number: 6 (lower is better) Translates to: RRPQMFSFAPFS*TQPPSSRPRVC Trigger: GCAGACGCGCGGGCGGGAAGATGGCGGCTGGGTTCAACTAAAGGGTGCAAACGAAAACATCTGTGGTCTCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000474661.5 |
||
| CDS CAA 90 bp | CGGTTCTGCAACTTTAACAACCACGGAGACCACAGATGTTTTCGTTaGCACCCTTTAGTTGAACCCAGCCGCCATCTTCCCGCCCGCGCG | + |
|
Preference number: 6 (lower is better) Translates to: RFCNFNNHGDHRCFR*HPLVEPSRHLPARA Trigger: CGCGCGGGCGGGAAGATGGCGGCTGGGTTCAACTAAAGGGTGCAAACGAAAACATCTGTGGTCTCCGTGGTTGTTAAAGTTGCAGAACCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000474661.5 |
||
| CDS CAA 72 bp | AACTTTAACAACCACGGAGACCACAGATGTTTTCGTTaGCACCCTTTAGTTGAACCCAGCCGCCATCTTCCC | + |
|
Preference number: 6 (lower is better) Translates to: NFNNHGDHRCFR*HPLVEPSRHLP Trigger: GGGAAGATGGCGGCTGGGTTCAACTAAAGGGTGCAAACGAAAACATCTGTGGTCTCCGTGGTTGTTAAAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000474661.5 |
||
| CDS GCA 72 bp | GCCCACTTCCACCTGGTTTGTGAAGACAACAGAGTTTaGCTTCCTCATCCATTACTATTGTTAAGGTTCCTG | + |
|
Preference number: 6 (lower is better) Translates to: AHFHLVCEDNRV*LPHPLLLLRFL Trigger: CAGGAACCTTAACAATAGTAATGGATGAGGAAGGCAAACTCTGTTGTCTTCACAAACCAGGTGGAAGTGGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000389704.4 ENST00000490537.6 |
||
| CDS TCA 72 bp | AATGAGATAGACCTGTTAAATCCCAGGCATAAAACCTaGCAAGGAGCAAGTTCTCAAATCTTACTGTTATAC | + |
|
Preference number: 6 (lower is better) Translates to: NEIDLLNPRHKT*QGASSQILLLY Trigger: GTATAACAGTAAGATTTGAGAACTTGCTCCTTGTCAGGTTTTATGCCTGGGATTTAACAGGTCTATCTCATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490537.6 |
||
| CDS CAA 72 bp | AACACAGGGTATACTGTAGTCAAAGAAGCACAGGCTTaGGAGTCAGATTTATGTCTAAGTTTTACTTATGAG | + |
|
Preference number: 6 (lower is better) Translates to: NTGYTVVKEAQA*ESDLCLSFTYE Trigger: CTCATAAGTAAAACTTAGACATAAATCTGACTCCAAAGCCTGTGCTTCTTTGACTACAGTATACCCTGTGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490537.6 |
||
| CDS CAA 72 bp | GCAAGTTATTTAACCTCTTACCTTAAACTCCTCATCTaGTCAAATGGGAAGAAAATAGTGTCTACTCCTAGG | + |
|
Preference number: 6 (lower is better) Translates to: ASYLTSYLKLLI*SNGKKIVSTPR Trigger: CCTAGGAGTAGACACTATTTTCTTCCCATTTGACAAGATGAGGAGTTTAAGGTAAGAGGTTAAATAACTTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490537.6 |
||