Pregenerated sensors for ERVK9-11 (Homo sapiens)
Ensembl gene IDs: ENSG00000269486Ensembl transcript IDs: ENST00000599320.2, ENST00000634729.1
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCTCCAGGTGGGTGGCTGTGTTTGACAGGTGTTGCTCGTGACAGTTaGGGTCTTCCTCAGCGTCAGTCTCGACATGGCTGCAACCGGGGG | + |
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Preference number: 5 (lower is better) Translates to: SPGGWLCLTGVARDS*GLPQRQSRHGCNRG Trigger: CCCCCGGTTGCAGCCATGTCGAGACTGACGCTGAGGAAGACCCCAACTGTCACGAGCAACACCTGTCAAACACAGCCACCCACCTGGAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 90 bp | ATCTGTGACAGCTTCTTGATCTGTCTCCAGGTGGGTGGCTGTGTTTaGCAGGTGTTGCTCGTGACAGTTGGGGTCTTCCTCAGCGTCAGT | + |
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Preference number: 5 (lower is better) Translates to: ICDSFLICLQVGGCV*QVLLVTVGVFLSVS Trigger: ACTGACGCTGAGGAAGACCCCAACTGTCACGAGCAACACCTGTCAAACACAGCCACCCACCTGGAGACAGATCAAGAAGCTGTCACAGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 90 bp | GTCCCACTTTCCTCAGGTTTTCTTCCACCATCTGTGACAGCTTCTTaGTCTGTCTCCAGGTGGGTGGCTGTGTTTGACAGGTGTTGCTCG | + |
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Preference number: 5 (lower is better) Translates to: VPLSSGFLPPSVTAS*SVSRWVAVFDRCCS Trigger: CGAGCAACACCTGTCAAACACAGCCACCCACCTGGAGACAGATCAAGAAGCTGTCACAGATGGTGGAAGAAAACCTGAGGAAAGTGGGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 90 bp | TGCGACTGGTTGTCCCACTTTCCTCAGGTTTTCTTCCACCATCTGTaGCAGCTTCTTGATCTGTCTCCAGGTGGGTGGCTGTGTTTGACA | + |
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Preference number: 5 (lower is better) Translates to: CDWLSHFPQVFFHHL*QLLDLSPGGWLCLT Trigger: TGTCAAACACAGCCACCCACCTGGAGACAGATCAAGAAGCTGTCACAGATGGTGGAAGAAAACCTGAGGAAAGTGGGACAACCAGTCGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS CCA 90 bp | GCTATTGTTTGTGGTACAGGAACCCCTTTAAGCCGTTTTCCATCCTaGGTGAGCCAGGTGTTCCTTGCCCTCATTCCAGTAAACCCACGA | + |
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Preference number: 5 (lower is better) Translates to: AIVCGTGTPLSRFPS*VSQVFLALIPVNPR Trigger: TCGTGGGTTTACTGGAATGAGGGCAAGGAACACCTGGCTCACCCAGGATGGAAAACGGCTTAAAGGGGTTCCTGTACCACAAACAATAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 90 bp | AATCTCTTCCTCAGCATCTGGCTCATGATAAGGTTTCAGGTGTCTTaGTGGTATCCAAATCGGCTGTTGAGTCAGTCCTGGAGAAACACA | + |
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Preference number: 5 (lower is better) Translates to: NLFLSIWLMIRFQVS*WYPNRLLSQSWRNT Trigger: TGTGTTTCTCCAGGACTGACTCAACAGCCGATTTGGATACCATCAAGACACCTGAAACCTTATCATGAGCCAGATGCTGAGGAAGAGATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 90 bp | GCATGCAGACTGAGAGGTGCAGTTCAAGCTAAACATCCCCATAGGTaGCCAATTAATAATGATTCCATAGGAATTGTTGTGCAGCACCTC | + |
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Preference number: 5 (lower is better) Translates to: ACRLRGAVQAKHPHR*PINNDSIGIVVQHL Trigger: GAGGTGCTGCACAACAATTCCTATGGAATCATTATTAATTGGTCACCTATGGGGATGTTTAGCTTGAACTGCACCTCTCAGTCTGCATGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 90 bp | TGCTGTATTTCTTACCATTTCTATCATCTGACCATTTTGTTCAGATaGGCTGATCACAGTGTGGCCATGGCATGCAGACTGAGAGGTGCA | + |
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Preference number: 5 (lower is better) Translates to: CCISYHFYHLTILFR*ADHSVAMACRLRGA Trigger: TGCACCTCTCAGTCTGCATGCCATGGCCACACTGTGATCAGCTCATCTGAACAAAATGGTCAGATGATAGAAATGGTAAGAAATACAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 90 bp | CAAATTGTTGGGCTGTTTAACATGCCTTGTGGCAATACTTTCCAGTaGAAACGCTTAGCAGGCTGCAGGTTGTTTACTGCAGGAATTGTA | + |
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Preference number: 5 (lower is better) Translates to: QIVGLFNMPCGNTFQ*KRLAGCRLFTAGIV Trigger: TACAATTCCTGCAGTAAACAACCTGCAGCCTGCTAAGCGTTTTCACTGGAAAGTATTGCCACAAGGCATGTTAAACAGCCCAACAATTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 90 bp | CAGATAATAGGAACTCTTGCTGTATTTCTTACCATTTCTATCATCTaGCCATTTTGTTCAGATGAGCTGATCACAGTGTGGCCATGGCAT | + |
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Preference number: 5 (lower is better) Translates to: QIIGTLAVFLTISII*PFCSDELITVWPWH Trigger: ATGCCATGGCCACACTGTGATCAGCTCATCTGAACAAAATGGTCAGATGATAGAAATGGTAAGAAATACAGCAAGAGTTCCTATTATCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 90 bp | TGCTGTTTCAGGGAGAGATTCATTCTTTCCACTATGGCTTGTCCTTaGGAATTATATGGGATACCAGTAATGTGTTTAATATTCCGTATA | + |
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Preference number: 5 (lower is better) Translates to: CCFRERFILSTMACP*ELYGIPVMCLIFRI Trigger: TATACGGAATATTAAACACATTACTGGTATCCCATATAATTCTCAAGGACAAGCCATAGTGGAAAGAATGAATCTCTCCCTGAAACAGCA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 72 bp | TCCAGGTGGGTGGCTGTGTTTGACAGGTGTTGCTCGTaGCAGTTGGGGTCTTCCTCAGCGTCAGTCTCGACA | + |
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Preference number: 6 (lower is better) Translates to: SRWVAVFDRCCS*QLGSSSASVST Trigger: TGTCGAGACTGACGCTGAGGAAGACCCCAACTGTCACGAGCAACACCTGTCAAACACAGCCACCCACCTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS GCA 72 bp | AAGCCGTTTTCCATCCTGGGTGAGCCAGGTGTTCCTTaGCCTCATTCCAGTAAACCCACGACCTTCAGGGTG | + |
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Preference number: 6 (lower is better) Translates to: KPFSILGEPGVP*PHSSKPTTFRV Trigger: CACCCTGAAGGTCGTGGGTTTACTGGAATGAGGGCAAGGAACACCTGGCTCACCCAGGATGGAAAACGGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 72 bp | AGCTTCTTGATCTGTCTCCAGGTGGGTGGCTGTGTTTaGCAGGTGTTGCTCGTGACAGTTGGGGTCTTCCTC | + |
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Preference number: 6 (lower is better) Translates to: SFLICLQVGGCV*QVLLVTVGVFL Trigger: GAGGAAGACCCCAACTGTCACGAGCAACACCTGTCAAACACAGCCACCCACCTGGAGACAGATCAAGAAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS CAA 72 bp | CAGCTTCTTGATCTGTCTCCAGGTGGGTGGCTGTGTTaGACAGGTGTTGCTCGTGACAGTTGGGGTCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: QLLDLSPGGWLC*TGVARDSWGLP Trigger: AGGAAGACCCCAACTGTCACGAGCAACACCTGTCAAACACAGCCACCCACCTGGAGACAGATCAAGAAGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS CCA 72 bp | TGTGGTACAGGAACCCCTTTAAGCCGTTTTCCATCCTaGGTGAGCCAGGTGTTCCTTGCCCTCATTCCAGTA | + |
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Preference number: 6 (lower is better) Translates to: CGTGTPLSRFPS*VSQVFLALIPV Trigger: TACTGGAATGAGGGCAAGGAACACCTGGCTCACCCAGGATGGAAAACGGCTTAAAGGGGTTCCTGTACCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 72 bp | TCCTCAGGTTTTCTTCCACCATCTGTGACAGCTTCTTaGTCTGTCTCCAGGTGGGTGGCTGTGTTTGACAGG | + |
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Preference number: 6 (lower is better) Translates to: SSGFLPPSVTAS*SVSRWVAVFDR Trigger: CCTGTCAAACACAGCCACCCACCTGGAGACAGATCAAGAAGCTGTCACAGATGGTGGAAGAAAACCTGAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 72 bp | AACCCACGACCTTCAGGGTGGGGGTCATGGCCATCATaGACATGTCACAGTGCTGCAGAGATTTTGTTTATG | + |
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Preference number: 6 (lower is better) Translates to: NPRPSGWGSWPS*TCHSAAEILFM Trigger: CATAAACAAAATCTCTGCAGCACTGTGACATGTTCATGATGGCCATGACCCCCACCCTGAAGGTCGTGGGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 72 bp | CTCAGCATCTGGCTCATGATAAGGTTTCAGGTGTCTTaGTGGTATCCAAATCGGCTGTTGAGTCAGTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: LSIWLMIRFQVS*WYPNRLLSQSW Trigger: CCAGGACTGACTCAACAGCCGATTTGGATACCATCAAGACACCTGAAACCTTATCATGAGCCAGATGCTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS CCA 72 bp | TGCCCATCACTGCAAAACACTGCAAAAGGTGACGCCTaGAAGAGGTGTATGAGCCCTAATGTGAGTGATGTA | + |
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Preference number: 6 (lower is better) Translates to: CPSLQNTAKGDA*KRCMSPNVSDV Trigger: TACATCACTCACATTAGGGCTCATACACCTCTTCCAGGCGTCACCTTTTGCAGTGTTTTGCAGTGATGGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS CAA 90 bp | GAATCTCTTCCTCAGCATCTGGCTCATGATAAGGTTTCAGGTGTCTaGATGGTATCCAAATCGGCTGTTGAGTCAGTCCTGGAGAAACAC | + |
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Preference number: 6 (lower is better) Translates to: ESLPQHLAHDKVSGV*MVSKSAVESVLEKH Trigger: GTGTTTCTCCAGGACTGACTCAACAGCCGATTTGGATACCATCAAGACACCTGAAACCTTATCATGAGCCAGATGCTGAGGAAGAGATTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 72 bp | GGGCTGTTTAACATGCCTTGTGGCAATACTTTCCAGTaGAAACGCTTAGCAGGCTGCAGGTTGTTTACTGCA | + |
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Preference number: 6 (lower is better) Translates to: GLFNMPCGNTFQ*KRLAGCRLFTA Trigger: TGCAGTAAACAACCTGCAGCCTGCTAAGCGTTTTCACTGGAAAGTATTGCCACAAGGCATGTTAAACAGCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS GCA 72 bp | TGTTCTGCTTCTGTCTTTGCAGCTGGTTTCTGTAGATaGTGTTCAGCTACTGATAGGATCTGGCCTTTAGGC | + |
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Preference number: 6 (lower is better) Translates to: CSASVFAAGFCR*CSATDRIWPLG Trigger: GCCTAAAGGCCAGATCCTATCAGTAGCTGAACAGCATCTACAGAAACCAGCTGCAAAGACAGAAGCAGAACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 72 bp | TCTTACCATTTCTATCATCTGACCATTTTGTTCAGATaGGCTGATCACAGTGTGGCCATGGCATGCAGACTG | + |
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Preference number: 6 (lower is better) Translates to: SYHFYHLTILFR*ADHSVAMACRL Trigger: CAGTCTGCATGCCATGGCCACACTGTGATCAGCTCATCTGAACAAAATGGTCAGATGATAGAAATGGTAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS GCA 72 bp | CCAGTGAAAACGCTTAGCAGGCTGCAGGTTGTTTACTaGAGGAATTGTAAATGCAAACTGTTCACAGTCTTG | + |
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Preference number: 6 (lower is better) Translates to: PVKTLSRLQVVY*RNCKCKLFTVL Trigger: CAAGACTGTGAACAGTTTGCATTTACAATTCCTGCAGTAAACAACCTGCAGCCTGCTAAGCGTTTTCACTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS CAA 72 bp | GTTCAATTGCTTGCCCTACATAAGTCTGGCAAATTGTaGGGCTGTTTAACATGCCTTGTGGCAATACTTTCC | + |
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Preference number: 6 (lower is better) Translates to: VQLLALHKSGKL*GCLTCLVAILS Trigger: GGAAAGTATTGCCACAAGGCATGTTAAACAGCCCAACAATTTGCCAGACTTATGTAGGGCAAGCAATTGAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS GCA 72 bp | TCCATAGGAATTGTTGTGCAGCACCTCTGCCTGTTCTaGAAAGCAATCTTCCTAAACAAGTACGTTCATTTT | + |
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Preference number: 6 (lower is better) Translates to: SIGIVVQHLCLF*KAIFLNKYVHF Trigger: AAAATGAACGTACTTGTTTAGGAAGATTGCTTTGCAGAACAGGCAGAGGTGCTGCACAACAATTCCTATGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS CAA 90 bp | CTGTGTCATAGAGTGATTACATCCAGGCATTATTGCCAGCCAAGATaGATAAATATGCCCAATAAGTATAATTGTCCTCTGTGTCAGCCC | + |
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Preference number: 6 (lower is better) Translates to: LCHRVITSRHYCQPR*INMPNKYNCPLCQP Trigger: GGGCTGACACAGAGGACAATTATACTTATTGGGCATATTTATCAATCTTGGCTGGCAATAATGCCTGGATGTAATCACTCTATGACACAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 72 bp | CTGAGAGGTGCAGTTCAAGCTAAACATCCCCATAGGTaGCCAATTAATAATGATTCCATAGGAATTGTTGTG | + |
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Preference number: 6 (lower is better) Translates to: LRGAVQAKHPHR*PINNDSIGIVV Trigger: CACAACAATTCCTATGGAATCATTATTAATTGGTCACCTATGGGGATGTTTAGCTTGAACTGCACCTCTCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS GCA 72 bp | AATAATGATTCCATAGGAATTGTTGTGCAGCACCTCTaGCTGTTCTGCAAAGCAATCTTCCTAAACAAGTAC | + |
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Preference number: 6 (lower is better) Translates to: NNDSIGIVVQHL*LFCKAIFLNKY Trigger: GTACTTGTTTAGGAAGATTGCTTTGCAGAACAGGCAGAGGTGCTGCACAACAATTCCTATGGAATCATTATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS CCA 72 bp | AAAGGGTGCATTCTACTCCTAACTGCTGTTTGCAGTTaGGTAAATAAAATCATCAGTTGTTCATCTGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: KGCILLLTAVCS*VNKIISCSSAG Trigger: TCCTGCAGATGAACAACTGATGATTTTATTTACCCAACTGCAAACAGCAGTTAGGAGTAGAATGCACCCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS CAA 72 bp | ATTGAAATCACAGAGCCTCCAAGTGTTTTTATCCATTaGAATGGGTTACTAGCTGCTAATCTGTCTGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: IEITEPPSVFIH*NGLLAANLSAA Trigger: AGCTGCAGACAGATTAGCAGCTAGTAACCCATTCAAATGGATAAAAACACTTGGAGGCTCTGTGATTTCAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 72 bp | ACGTATGAAGAGTCAGAAATCACATTAATAGGCATATaGAAAGCAGTCACTACCTCAATTACAGCTACAGGC | + |
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Preference number: 6 (lower is better) Translates to: TYEESEITLIGI*KAVTTSITATG Trigger: GCCTGTAGCTGTAATTGAGGTAGTGACTGCTTTTCATATGCCTATTAATGTGATTTCTGACTCTTCATACGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 72 bp | GCTAACTGGGTCCAATCCTGTTTACAAATATGTTTTTaGGGGCAGTATGCCTCAATTATAGGAGCAGATTTA | + |
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Preference number: 6 (lower is better) Translates to: ANWVQSCLQICF*GQYASIIGADL Trigger: TAAATCTGCTCCTATAATTGAGGCATACTGCCCTCAAAAACATATTTGTAAACAGGATTGGACCCAGTTAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS CAA 90 bp | CTGCTGTTTCAGGGAGAGATTCATTCTTTCCACTATGGCTTGTCCTaGAGAATTATATGGGATACCAGTAATGTGTTTAATATTCCGTAT | + |
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Preference number: 6 (lower is better) Translates to: LLFQGEIHSFHYGLS*RIIWDTSNVFNIPY Trigger: ATACGGAATATTAAACACATTACTGGTATCCCATATAATTCTCAAGGACAAGCCATAGTGGAAAGAATGAATCTCTCCCTGAAACAGCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS CAA 72 bp | CAGGGAGAGATTCATTCTTTCCACTATGGCTTGTCCTaGAGAATTATATGGGATACCAGTAATGTGTTTAAT | + |
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Preference number: 6 (lower is better) Translates to: QGEIHSFHYGLS*RIIWDTSNVFN Trigger: ATTAAACACATTACTGGTATCCCATATAATTCTCAAGGACAAGCCATAGTGGAAAGAATGAATCTCTCCCTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS CAA 72 bp | AGAGTGATTACATCCAGGCATTATTGCCAGCCAAGATaGATAAATATGCCCAATAAGTATAATTGTCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: RVITSRHYCQPR*INMPNKYNCPL Trigger: CAGAGGACAATTATACTTATTGGGCATATTTATCAATCTTGGCTGGCAATAATGCCTGGATGTAATCACTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS CAA 90 bp | AGGAAAATGGTTATCGAGAATACCCACAAAGTCAGCTTAATTGGTTaGCCAAGTAAGACTATTTATAAAAGCTTGCTGTATTTGTGCCTT | + |
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Preference number: 6 (lower is better) Translates to: RKMVIENTHKVSLIG*PSKTIYKSLLYLCL Trigger: AAGGCACAAATACAGCAAGCTTTTATAAATAGTCTTACTTGGCAAACCAATTAAGCTGACTTTGTGGGTATTCTCGATAACCATTTTCCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS TCA 72 bp | AGGGAGAGATTCATTCTTTCCACTATGGCTTGTCCTTaGGAATTATATGGGATACCAGTAATGTGTTTAATA | + |
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Preference number: 6 (lower is better) Translates to: RERFILSTMACP*ELYGIPVMCLI Trigger: TATTAAACACATTACTGGTATCCCATATAATTCTCAAGGACAAGCCATAGTGGAAAGAATGAATCTCTCCCT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS CAA 72 bp | CTGCAAAGCAATCTTCCTAAACAAGTACGTTCATTTTaGCTAACTGGGTCCAATCCTGTTTACAAATATGTT | + |
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Preference number: 6 (lower is better) Translates to: LQSNLPKQVRSF*LTGSNPVYKYV Trigger: AACATATTTGTAAACAGGATTGGACCCAGTTAGCAAAAATGAACGTACTTGTTTAGGAAGATTGCTTTGCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS CAA 72 bp | TTGCCAAGTAAGACTATTTATAAAAGCTTGCTGTATTaGTGCCTTTGTGAGAGGGATAATAATTTTTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: LPSKTIYKSLLY*CLCERDNNFSR Trigger: CCTGGAAAAATTATTATCCCTCTCACAAAGGCACAAATACAGCAAGCTTTTATAAATAGTCTTACTTGGCAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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| CDS CAA 72 bp | GTTATCGAGAATACCCACAAAGTCAGCTTAATTGGTTaGCCAAGTAAGACTATTTATAAAAGCTTGCTGTAT | + |
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Preference number: 6 (lower is better) Translates to: VIENTHKVSLIG*PSKTIYKSLLY Trigger: ATACAGCAAGCTTTTATAAATAGTCTTACTTGGCAAACCAATTAAGCTGACTTTGTGGGTATTCTCGATAAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000599320.2 ENST00000634729.1 |
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