RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ERO1A (Homo sapiens)

Ensembl gene IDs: ENSG00000197930

Ensembl transcript IDs: ENST00000395686.8, ENST00000554019.5, ENST00000554251.5, ENST00000555069.1, ENST00000556039.5, ENST00000556223.1, ENST00000556358.5, ENST00000629528.2

Found 136 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAGGTAGGTTGTAATTACAGTGGTGACACGAAAGTGGAAGTTAGATaGCTCTCCTTGAGTGGAGCAAAGGAGGTTTCACAGAGGAAATGC +
Preference number: 1 (lower is better)
Translates to: EVGCNYSGDTKVEVR*LSLSGAKEVSQRKC
Trigger: GCATTTCCTCTGTGAAACCTCCTTTGCTCCACTCAAGGAGAGTCATCTAACTTCCACTTTCGTGTCACCACTGTAATTACAACCTACCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR TCA 90 bp GTAATTACAGTGGTGACACGAAAGTGGAAGTTAGATGACTCTCCTTaGGTGGAGCAAAGGAGGTTTCACAGAGGAAATGCTTATGTCAGG +
Preference number: 1 (lower is better)
Translates to: VITVVTRKWKLDDSP*VEQRRFHRGNAYVR
Trigger: CCTGACATAAGCATTTCCTCTGTGAAACCTCCTTTGCTCCACTCAAGGAGAGTCATCTAACTTCCACTTTCGTGTCACCACTGTAATTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR CCA 90 bp GAATACAATTTCAGCTTTATTGACCCCCTAAAGTCTACAAATCCTTaGGACTCTACTGACCCTTGCTGTAAAGTGAAGGGAGTGAAAGTA +
Preference number: 1 (lower is better)
Translates to: EYNFSFIDPLKSTNP*DSTDPCCKVKGVKV
Trigger: TACTTTCACTCCCTTCACTTTACAGCAAGGGTCAGTAGAGTCCCAAGGATTTGTAGACTTTAGGGGGTCAATAAAGCTGAAATTGTATTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR TCA 90 bp TTATATAAAATGTTTGGCTTAAGACTGTCATTGCTATTATGCCTTTaGATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCA +
Preference number: 1 (lower is better)
Translates to: LYKMFGLRLSLLLCL*MKFHSFASIVQKQA
Trigger: TGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTTAAGCCAAACATTTTATATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
3UTR-3UTR TCA 90 bp TCCAAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCGGGGTGGTTCAGGAGTaGGCAAAATGTAAGAAGTCA +
Preference number: 2 (lower is better)
Translates to: SKWGRMTSILDAKSTAFTGVVQE*AKCKKS
Trigger: TGACTTCTTACATTTTGCTCACTCCTGAACCACCCC...GGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR CAA 90 bp CAGGTGTCTCTGGGACAACCAAGAAAAGTGCAACAGGCAGATGGATaGAGGAGTCTGGCTAAAGATAAGGATTTAGGAACTGCTGAATTA +
Preference number: 2 (lower is better)
Translates to: QVSLGQPRKVQQADG*RSLAKDKDLGTAEL
Trigger: TAATTCAGCAGTTCCTAAATCCTTATCTTTAGCCAGACTCCTCAATCCATCTGCCTGTTGCACTTTTCTTGGTTGTCCCAGAGACACCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR-3UTR TCA 90 bp TCCAAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCATTATGGGTCATTTATaGGGCCTCCTTAGCATTTTC +
Preference number: 2 (lower is better)
Translates to: SKWGRMTSILDAKSTAFTIMGHL*GLLSIF
Trigger: GAAAATGCTAAGGAGGCCTCATAAATGACCCATAAT...GGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR-3UTR TCA 90 bp AAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCAAGCACTTCATAGTCTTTTaGGTCTCCAAGAGGATTGAC +
Preference number: 2 (lower is better)
Translates to: KWGRMTSILDAKSTAFTKHFIVF*VSKRID
Trigger: GTCAATCCTCTTGGAGACTCAAAAGACTATGAAGTG...CTTGGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR-3UTR TCA 90 bp GTTTCACCAGAACATTCGGTGGAGGAAACACATCAGAAGACCTTGTACACCAAAGGATTTAGGAACTGCTaGATTAAAATTACCCAAGCG +
Preference number: 2 (lower is better)
Translates to: VSPEHSVEETHQKTLYTKGFRNC*IKITQA
Trigger: CGCTTGGGTAATTTTAATTCAGCAGTTCCTAAATCC...TTTGGTGTACAAGGTCTTCTGATGTGTTTCCTCCACCGAATGTTCTGGTGAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR-3UTR CCA 90 bp ATGGTTCTAAAATTAACCAAAGTAAGGGACACAGGCATTAGAGTAGGTTTTGCAACACACAGGTGTCTCTaGGACAACCAAGAAAAGTGC +
Preference number: 2 (lower is better)
Translates to: MVLKLTKVRDTGIRVGFATHRCL*DNQEKC
Trigger: GCACTTTTCTTGGTTGTCCCAGAGACACCTGTGTGT...TGCAAAACCTACTCTAATGCCTGTGTCCCTTACTTTGGTTAATTTTAGAACCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR-3UTR CCA 90 bp ATGGTTCTAAAATTAACCAAAGTAAGGGACACAGGCATTAGAGTAGGTTTTGCAGTTCAAGTTCCAGCTTaGGCAACACAGCAAAACCTT +
Preference number: 2 (lower is better)
Translates to: MVLKLTKVRDTGIRVGFAVQVPA*ATQQNL
Trigger: AAGGTTTTGCTGTGTTGCCCAAGCTGGAACTTGAAC...TGCAAAACCTACTCTAATGCCTGTGTCCCTTACTTTGGTTAATTTTAGAACCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR-3UTR TCA 90 bp ATGGTTCTAAAATTAACCAAAGTAAGGGACACAGGCATTAGAGTAGGTTTTGCATATTATGCCTTTGAATaGAATTCCACTCTTTCGCCT +
Preference number: 2 (lower is better)
Translates to: MVLKLTKVRDTGIRVGFAYYAFE*NSTLSP
Trigger: AGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATA...TGCAAAACCTACTCTAATGCCTGTGTCCCTTACTTTGGTTAATTTTAGAACCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR-3UTR TCA 90 bp CTTGAAATATTTCTAAAATGCAGTCGAAAGTCCTCCTTTAGTTTGTGTGCTTCTTATTATGCCTTTGAATaGAATTCCACTCTTTCGCCT +
Preference number: 2 (lower is better)
Translates to: LEIFLKCSRKSSFSLCASYYAFE*NSTLSP
Trigger: AGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATA...AGAAGCACACAAACTAAAGGAGGACTTTCGACTGCATTTTAGAAATATTTCAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
3UTR TCA 72 bp TTTACCAAGGCGGGAGGCCTGGCCAAATGTGGCTTCTaGAGAAGTGTAAGTCTGTTTCACCAGAACATTCGG +
Preference number: 3 (lower is better)
Translates to: FTKAGGLAKCGF*RSVSLFHQNIR
Trigger: CCGAATGTTCTGGTGAAACAGACTTACACTTCTTCAGAAGCCACATTTGGCCAGGCCTCCCGCCTTGGTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR CCA 72 bp TACAGCATTTACCAAGGCGGGAGGCCTGGCCAAATGTaGCTTCTGAAGAAGTGTAAGTCTGTTTCACCAGAA +
Preference number: 3 (lower is better)
Translates to: YSIYQGGRPGQM*LLKKCKSVSPE
Trigger: TTCTGGTGAAACAGACTTACACTTCTTCAGAAGCCACATTTGGCCAGGCCTCCCGCCTTGGTAAATGCTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR TCA 72 bp GTGGTGACACGAAAGTGGAAGTTAGATGACTCTCCTTaGGTGGAGCAAAGGAGGTTTCACAGAGGAAATGCT +
Preference number: 3 (lower is better)
Translates to: VVTRKWKLDDSP*VEQRRFHRGNA
Trigger: AGCATTTCCTCTGTGAAACCTCCTTTGCTCCACTCAAGGAGAGTCATCTAACTTCCACTTTCGTGTCACCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR-3UTR CAA 90 bp GTTTCACCAGAACATTCGGTGGAGGAAACACATCAGAAGACCTTGTACACCAAAACTCTTTCGCCTCCATaGTCCAGAAACAGGCACATA +
Preference number: 3 (lower is better)
Translates to: VSPEHSVEETHQKTLYTKTLSPP*SRNRHI
Trigger: TATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGT...TTTGGTGTACAAGGTCTTCTGATGTGTTTCCTCCACCGAATGTTCTGGTGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR-3UTR CAA 90 bp TCCAAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCATACCAAGTATGTGCTaGGCACTGTACCAGGCCTTA +
Preference number: 3 (lower is better)
Translates to: SKWGRMTSILDAKSTAFTIPSMC*ALYQAL
Trigger: TAAGGCCTGGTACAGTGCCAAGCACATACTTGGTAT...GGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR-3UTR CAA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATACTCTTTCGCCTCCATaGTCCAGAAACAGGCACATA +
Preference number: 3 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYTLSPP*SRNRHI
Trigger: TATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGT...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
3UTR GCA 72 bp TCCTTGAGTGGAGCAAAGGAGGTTTCACAGAGGAAATaGTTATGTCAGGCCTGCAAGATGCATAGGAATTTT +
Preference number: 3 (lower is better)
Translates to: SLSGAKEVSQRK*LCQACKMHRNF
Trigger: AAAATTCCTATGCATCTTGCAGGCCTGACATAAGCATTTCCTCTGTGAAACCTCCTTTGCTCCACTCAAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR CCA 72 bp TTCAGCTTTATTGACCCCCTAAAGTCTACAAATCCTTaGGACTCTACTGACCCTTGCTGTAAAGTGAAGGGA +
Preference number: 3 (lower is better)
Translates to: FSFIDPLKSTNP*DSTDPCCKVKG
Trigger: TCCCTTCACTTTACAGCAAGGGTCAGTAGAGTCCCAAGGATTTGTAGACTTTAGGGGGTCAATAAAGCTGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR CCA 72 bp TGGCTTCTTCAGAATACTCTCAAGGGGTTTCACCACTaGAAGCAGATAAATGGGATAGTAGGTACAACGGAA +
Preference number: 3 (lower is better)
Translates to: WLLQNTLKGFHH*KQINGIVGTTE
Trigger: TTCCGTTGTACCTACTATCCCATTTATCTGCTTCCAGTGGTGAAACCCCTTGAGAGTATTCTGAAGAAGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000556223.1
3UTR-3UTR CAA 90 bp TCCAAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCGCCTTTGAGTTGTTATaGTACGTTTCTACACACAAA +
Preference number: 3 (lower is better)
Translates to: SKWGRMTSILDAKSTAFTAFELL*YVSTHK
Trigger: TTTGTGTGTAGAAACGTACAATAACAACTCAAAGGC...GGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR-3UTR CAA 90 bp CTTGAAATATTTCTAAAATGCAGTCGAAAGTCCTCCTTTAGTTTGTGTGCTTCTACTCTTTCGCCTCCATaGTCCAGAAACAGGCACATA +
Preference number: 3 (lower is better)
Translates to: LEIFLKCSRKSSFSLCASTLSPP*SRNRHI
Trigger: TATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGT...AGAAGCACACAAACTAAAGGAGGACTTTCGACTGCATTTTAGAAATATTTCAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
3UTR-3UTR CAA 90 bp AAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCAAGAAATCTCCTGTGCCTTaGAGTTGTTATTGTACGTTT +
Preference number: 3 (lower is better)
Translates to: KWGRMTSILDAKSTAFTKKSPVP*SCYCTF
Trigger: AAACGTACAATAACAACTCAAAGGCACAGGAGATTT...CTTGGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR-3UTR CAA 90 bp AAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCAAGAAAGAGGGCACGATTTaGAGGTATATAGCTTCTTTT +
Preference number: 3 (lower is better)
Translates to: KWGRMTSILDAKSTAFTKKEGTI*RYIASF
Trigger: AAAAGAAGCTATATACCTCAAAATCGTGCCCTCTTT...CTTGGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR TCA 72 bp ATGTTTGGCTTAAGACTGTCATTGCTATTATGCCTTTaGATGAAATTCCACTCTTTCGCCTCCATTGTCCAG +
Preference number: 3 (lower is better)
Translates to: MFGLRLSLLLCL*MKFHSFASIVQ
Trigger: CTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTTAAGCCAAACAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
3UTR GCA 72 bp CTAAAGTCTACAAATCCTTGGGACTCTACTGACCCTTaGTGTAAAGTGAAGGGAGTGAAAGTATTTGGAATA +
Preference number: 3 (lower is better)
Translates to: LKSTNPWDSTDP*CKVKGVKVFGI
Trigger: TATTCCAAATACTTTCACTCCCTTCACTTTACAGCAAGGGTCAGTAGAGTCCCAAGGATTTGTAGACTTTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR-3UTR CAA 90 bp ATGGTTCTAAAATTAACCAAAGTAAGGGACACAGGCATTAGAGTAGGTTTTGCATCCTGTGCCTTTGAGTaGTTATTGTACGTTTCTACA +
Preference number: 3 (lower is better)
Translates to: MVLKLTKVRDTGIRVGFASCAFE*LLYVST
Trigger: TGTAGAAACGTACAATAACAACTCAAAGGCACAGGA...TGCAAAACCTACTCTAATGCCTGTGTCCCTTACTTTGGTTAATTTTAGAACCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR TCA 72 bp CTGAAAAATTCTACGTTGGTAATTATGGGTCATTTATaGGGCCTCCTTAGCATTTTCCTATTAAATGCTTGT +
Preference number: 3 (lower is better)
Translates to: LKNSTLVIMGHL*GLLSIFLLNAC
Trigger: ACAAGCATTTAATAGGAAAATGCTAAGGAGGCCTCATAAATGACCCATAATTACCAACGTAGAATTTTTCAG
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp GTTTCACCAGAACATTCGGTGGAGGAAACACATCAGAAGACCTTGTACACCAAACTCCGTGGCCCGAGCTaGGCAGCCACACGGCGCCCA +
Preference number: 4 (lower is better)
Translates to: VSPEHSVEETHQKTLYTKLRGPS*AATRRP
Trigger: TGGGCGCCGTGTGGCTGCTCAGCTCGGGCCACGGAG...TTTGGTGTACAAGGTCTTCTGATGTGTTTCCTCCACCGAATGTTCTGGTGAAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATCCGTGCGCCCTCAGATaGAGCCCGTGCGGGCCGGCC +
Preference number: 4 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYPCALR*SPCGPA
Trigger: GGCCGGCCCGCACGGGCTTCATCTGAGGGCGCACGG...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
CDS-3UTR TCA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATCTCCGTGGCCCGAGCTaGGCAGCCACACGGCGCCCA +
Preference number: 4 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYLRGPS*AATRRP
Trigger: TGGGCGCCGTGTGGCTGCTCAGCTCGGGCCACGGAG...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
CDS-3UTR CCA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATCTGACGCCCCCGGCCTaGAGACGCAACCCGACGCGC +
Preference number: 4 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYLTPPA*RRNPTR
Trigger: GCGCGTCGGGTTGCGTCTCCAGGCCGGGGGCGTCAG...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
CDS-3UTR TCA 90 bp CACTGGAAGCAGATAAATGGGATAGTAGGTACAACGGAAATGGGTTTTTCAAGTCTCCGTGGCCCGAGCTaGGCAGCCACACGGCGCCCA +
Preference number: 4 (lower is better)
Translates to: HWKQINGIVGTTEMGFSSLRGPS*AATRRP
Trigger: TGGGCGCCGTGTGGCTGCTCAGCTCGGGCCACGGAG...ACTTGAAAAACCCATTTCCGTTGTACCTACTATCCCATTTATCTGCTTCCAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000556223.1
CDS-3UTR TCA 90 bp AAGACTGTCATTGCTATTATGCCTTTGAATGAAATTCCACTCTTTCGCCTCCATCCGTGCGCCCTCAGATaGAGCCCGTGCGGGCCGGCC +
Preference number: 4 (lower is better)
Translates to: KTVIAIMPLNEIPLFRLHPCALR*SPCGPA
Trigger: GGCCGGCCCGCACGGGCTTCATCTGAGGGCGCACGG...ATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
CDS-3UTR GCA 90 bp TCCAAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCCCAGCCGCGGCCCATTaGAGCTCCGGCAGCTTGTCG +
Preference number: 4 (lower is better)
Translates to: SKWGRMTSILDAKSTAFTPAAAH*SSGSLS
Trigger: CGACAAGCTGCCGGAGCTGCAATGGGCCGCGGCTGG...GGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR GCA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATCCGCCTCGGCCCTCCTaGCTCTCAGCGATCGCCACC +
Preference number: 4 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYPPRPS*LSAIAT
Trigger: GGTGGCGATCGCTGAGAGGCAGGAGGGCCGAGGCGG...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
CDS-3UTR GCA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATCCAGCCGCGGCCCATTaGAGCTCCGGCAGCTTGTCG +
Preference number: 4 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYPAAAH*SSGSLS
Trigger: CGACAAGCTGCCGGAGCTGCAATGGGCCGCGGCTGG...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
CDS-3UTR GCA 90 bp TCACCACTGGAAGCAGATAAATGGGATAGTAGGTACAACGGAAATGGGTTTTTCCCAGCCGCGGCCCATTaGAGCTCCGGCAGCTTGTCG +
Preference number: 4 (lower is better)
Translates to: SPLEADKWDSRYNGNGFFPAAAH*SSGSLS
Trigger: CGACAAGCTGCCGGAGCTGCAATGGGCCGCGGCTGG...GAAAAACCCATTTCCGTTGTACCTACTATCCCATTTATCTGCTTCCAGTGGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000556223.1
CDS-3UTR GCA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATCACAACCCCAGACCCTaGGCGGGAGTCGGGGGTCCT +
Preference number: 4 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYHNPRP*AGVGGP
Trigger: AGGACCCCCGACTCCCGCGCAGGGTCTGGGGTTGTG...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
CDS-3UTR CCA 90 bp AAGACTGTCATTGCTATTATGCCTTTGAATGAAATTCCACTCTTTCGCCTCCATCTGACGCCCCCGGCCTaGAGACGCAACCCGACGCGC +
Preference number: 4 (lower is better)
Translates to: KTVIAIMPLNEIPLFRLHLTPPA*RRNPTR
Trigger: GCGCGTCGGGTTGCGTCTCCAGGCCGGGGGCGTCAG...ATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
CDS-3UTR GCA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATGCAGAAGCACCTCTGTaGCGCTGTCTCCGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYAEAPL*RCLRGL
Trigger: CAGCCCCCGGAGACAGCGGCACAGAGGTGCTTCTGC...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
CDS-3UTR CCA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATTTGTCGCCCCACGCTTaGGAGGCCAGTCCGCACGCT +
Preference number: 4 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYLSPHA*EASPHA
Trigger: AGCGTGCGGACTGGCCTCCCAAGCGTGGGGCGACAA...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
CDS-3UTR TCA 90 bp CTTGAAATATTTCTAAAATGCAGTCGAAAGTCCTCCTTTAGTTTGTGTGCTTCTCTCCGTGGCCCGAGCTaGGCAGCCACACGGCGCCCA +
Preference number: 4 (lower is better)
Translates to: LEIFLKCSRKSSFSLCASLRGPS*AATRRP
Trigger: TGGGCGCCGTGTGGCTGCTCAGCTCGGGCCACGGAG...AGAAGCACACAAACTAAAGGAGGACTTTCGACTGCATTTTAGAAATATTTCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
CDS-3UTR GCA 90 bp AAGACTGTCATTGCTATTATGCCTTTGAATGAAATTCCACTCTTTCGCCTCCATCCAGCCGCGGCCCATTaGAGCTCCGGCAGCTTGTCG +
Preference number: 4 (lower is better)
Translates to: KTVIAIMPLNEIPLFRLHPAAAH*SSGSLS
Trigger: CGACAAGCTGCCGGAGCTGCAATGGGCCGCGGCTGG...ATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
CDS-3UTR GCA 90 bp AAGACTGTCATTGCTATTATGCCTTTGAATGAAATTCCACTCTTTCGCCTCCATCACAACCCCAGACCCTaGGCGGGAGTCGGGGGTCCT +
Preference number: 4 (lower is better)
Translates to: KTVIAIMPLNEIPLFRLHHNPRP*AGVGGP
Trigger: AGGACCCCCGACTCCCGCGCAGGGTCTGGGGTTGTG...ATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
CDS-3UTR CCA 90 bp ATGGTTCTAAAATTAACCAAAGTAAGGGACACAGGCATTAGAGTAGGTTTTGCATTGTCGCCCCACGCTTaGGAGGCCAGTCCGCACGCT +
Preference number: 4 (lower is better)
Translates to: MVLKLTKVRDTGIRVGFALSPHA*EASPHA
Trigger: AGCGTGCGGACTGGCCTCCCAAGCGTGGGGCGACAA...TGCAAAACCTACTCTAATGCCTGTGTCCCTTACTTTGGTTAATTTTAGAACCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR CCA 90 bp CTTGAAATATTTCTAAAATGCAGTCGAAAGTCCTCCTTTAGTTTGTGTGCTTCTTTGTCGCCCCACGCTTaGGAGGCCAGTCCGCACGCT +
Preference number: 4 (lower is better)
Translates to: LEIFLKCSRKSSFSLCASLSPHA*EASPHA
Trigger: AGCGTGCGGACTGGCCTCCCAAGCGTGGGGCGACAA...AGAAGCACACAAACTAAAGGAGGACTTTCGACTGCATTTTAGAAATATTTCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
CDS-3UTR TCA 90 bp GTTTCACCAGAACATTCGGTGGAGGAAACACATCAGAAGACCTTGTACACCAAATTCTTCCACACTGGCTaGTGTCATTCCAGAAAGGAC +
Preference number: 4 (lower is better)
Translates to: VSPEHSVEETHQKTLYTKFFHTG*CHSRKD
Trigger: GTCCTTTCTGGAATGACATCAGCCAGTGTGGAAGAA...TTTGGTGTACAAGGTCTTCTGATGTGTTTCCTCCACCGAATGTTCTGGTGAAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR GCA 90 bp TCCAAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCGACTCTACTGACCCTTaGTGTAAAGTGAAGGGAGTG +
Preference number: 4 (lower is better)
Translates to: SKWGRMTSILDAKSTAFTDSTDP*CKVKGV
Trigger: CACTCCCTTCACTTTACAGCAAGGGTCAGTAGAGTC...GGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATCAGATTGACATGGTTTaGCAGCACAGTCCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYQIDMV*QHSPFF
Trigger: GAAGAAGGGACTGTGCTGTCAAACCATGTCAATCTG...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
CDS-3UTR TCA 90 bp TCACCACTGGAAGCAGATAAATGGGATAGTAGGTACAACGGAAATGGGTTTTTCCAGATTGACATGGTTTaGCAGCACAGTCCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: SPLEADKWDSRYNGNGFFQIDMV*QHSPFF
Trigger: GAAGAAGGGACTGTGCTGTCAAACCATGTCAATCTG...GAAAAACCCATTTCCGTTGTACCTACTATCCCATTTATCTGCTTCCAGTGGTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000556223.1
CDS-3UTR TCA 90 bp TCCAAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCGGAACTTCATCAGATTaGCATGGTTTGACAGCACAG +
Preference number: 4 (lower is better)
Translates to: SKWGRMTSILDAKSTAFTGTSSD*HGLTAQ
Trigger: CTGTGCTGTCAAACCATGTCAATCTGATGAAGTTCC...GGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp GCTTCTTCAGAATACTCTCAAGGGGTTTCACCACTGGAAGCAGATAAATGGGATGGAACTTCATCAGATTaGCATGGTTTGACAGCACAG +
Preference number: 4 (lower is better)
Translates to: ASSEYSQGVSPLEADKWDGTSSD*HGLTAQ
Trigger: CTGTGCTGTCAAACCATGTCAATCTGATGAAGTTCC...ATCCCATTTATCTGCTTCCAGTGGTGAAACCCCTTGAGAGTATTCTGAAGAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000556223.1
CDS-3UTR TCA 90 bp AAGACTGTCATTGCTATTATGCCTTTGAATGAAATTCCACTCTTTCGCCTCCATAGCTACTTGGGAGGCTaGGGTGGGAAGATCACTTCA +
Preference number: 4 (lower is better)
Translates to: KTVIAIMPLNEIPLFRLHSYLGG*GGKITS
Trigger: TGAAGTGATCTTCCCACCTCAGCCTCCCAAGTAGCT...ATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp AAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCAAGGGGGTGGTTCAGGAGTaGGCAAAATGTAAGAAGTCA +
Preference number: 4 (lower is better)
Translates to: KWGRMTSILDAKSTAFTKGVVQE*AKCKKS
Trigger: TGACTTCTTACATTTTGCTCACTCCTGAACCACCCC...CTTGGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp GTTTCACCAGAACATTCGGTGGAGGAAACACATCAGAAGACCTTGTACACCAAAAGTTTGGCTTTCTCCTaGAAGTTCCTGAAGTCACTG +
Preference number: 4 (lower is better)
Translates to: VSPEHSVEETHQKTLYTKSLAFS*KFLKSL
Trigger: CAGTGACTTCAGGAACTTTCAGGAGAAAGCCAAACT...TTTGGTGTACAAGGTCTTCTGATGTGTTTCCTCCACCGAATGTTCTGGTGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR CCA 90 bp GTTTCACCAGAACATTCGGTGGAGGAAACACATCAGAAGACCTTGTACACCAAATCCCTTCTTCCACACTaGCTGATGTCATTCCAGAAA +
Preference number: 4 (lower is better)
Translates to: VSPEHSVEETHQKTLYTKSLLPH*LMSFQK
Trigger: TTTCTGGAATGACATCAGCCAGTGTGGAAGAAGGGA...TTTGGTGTACAAGGTCTTCTGATGTGTTTCCTCCACCGAATGTTCTGGTGAAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR CCA 90 bp GTTTCACCAGAACATTCGGTGGAGGAAACACATCAGAAGACCTTGTACACCAAAAAGTCTACAAATCCTTaGGACTCTACTGACCCTTGC +
Preference number: 4 (lower is better)
Translates to: VSPEHSVEETHQKTLYTKKSTNP*DSTDPC
Trigger: GCAAGGGTCAGTAGAGTCCCAAGGATTTGTAGACTT...TTTGGTGTACAAGGTCTTCTGATGTGTTTCCTCCACCGAATGTTCTGGTGAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000395686.8
3UTR CAA 72 bp CTGGGACAACCAAGAAAAGTGCAACAGGCAGATGGATaGAGGAGTCTGGCTAAAGATAAGGATTTAGGAACT +
Preference number: 4 (lower is better)
Translates to: LGQPRKVQQADG*RSLAKDKDLGT
Trigger: AGTTCCTAAATCCTTATCTTTAGCCAGACTCCTCAATCCATCTGCCTGTTGCACTTTTCTTGGTTGTCCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATTCTTCACTTGTCCCTTaGCCAGAAGCCAAAGGATTT +
Preference number: 4 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYSSLVP*PEAKGF
Trigger: AAATCCTTTGGCTTCTGGTCAAGGGACAAGTGAAGA...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATTTTCCAGTAAAGAGTTaGAAATCTGGGCGCTCGAAG +
Preference number: 4 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYFPVKS*KSGRSK
Trigger: CTTCGAGCGCCCAGATTTTCAACTCTTTACTGGAAA...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
CDS-3UTR TCA 90 bp TCCAAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCCACTTCATAGTCTTTTaGGTCTCCAAGAGGATTGAC +
Preference number: 4 (lower is better)
Translates to: SKWGRMTSILDAKSTAFTHFIVF*VSKRID
Trigger: GTCAATCCTCTTGGAGACTCAAAAGACTATGAAGTG...GGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATGGAGCCAGTAGAAGGTaGCAAAGTAGAGGTAAGAAT +
Preference number: 4 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYGASRR*QSRGKN
Trigger: ATTCTTACCTCTACTTTGTCACCTTCTACTGGCTCC...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp AAGACTGTCATTGCTATTATGCCTTTGAATGAAATTCCACTCTTTCGCCTCCATCAGATTGACATGGTTTaGCAGCACAGTCCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: KTVIAIMPLNEIPLFRLHQIDMV*QHSPFF
Trigger: GAAGAAGGGACTGTGCTGTCAAACCATGTCAATCTG...ATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
CDS-3UTR TCA 90 bp TCCAAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCAATCTCCTGTGCCTTTaGGTTGTTATTGTACGTTTC +
Preference number: 4 (lower is better)
Translates to: SKWGRMTSILDAKSTAFTNLLCL*VVIVRF
Trigger: GAAACGTACAATAACAACTCAAAGGCACAGGAGATT...GGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR CCA 90 bp AAGACTGTCATTGCTATTATGCCTTTGAATGAAATTCCACTCTTTCGCCTCCATAGGCCTGGCCAAATGTaGCTTCTGAAGAAGTGTAAG +
Preference number: 4 (lower is better)
Translates to: KTVIAIMPLNEIPLFRLHRPGQM*LLKKCK
Trigger: CTTACACTTCTTCAGAAGCCACATTTGGCCAGGCCT...ATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR CCA 90 bp CTTCTTCAGAATACTCTCAAGGGGTTTCACCACTGGAAGCAGATAAATGGGATAAAGGGGTTTCACCACTaGAAGCAGATAAATGGGATA +
Preference number: 4 (lower is better)
Translates to: LLQNTLKGFHHWKQINGIKGFHH*KQINGI
Trigger: TATCCCATTTATCTGCTTCCAGTGGTGAAACCCCTT...TATCCCATTTATCTGCTTCCAGTGGTGAAACCCCTTGAGAGTATTCTGAAGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000556223.1
CDS-3UTR TCA 90 bp TCCAAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCGTTCACATTCTTCAATaGGATTATTGGCTTCTTCAG +
Preference number: 4 (lower is better)
Translates to: SKWGRMTSILDAKSTAFTVHILQ*DYWLLQ
Trigger: CTGAAGAAGCCAATAATCTCATTGAAGAATGTGAAC...GGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp GCTTCTTCAGAATACTCTCAAGGGGTTTCACCACTGGAAGCAGATAAATGGGATGTTCACATTCTTCAATaGGATTATTGGCTTCTTCAG +
Preference number: 4 (lower is better)
Translates to: ASSEYSQGVSPLEADKWDVHILQ*DYWLLQ
Trigger: CTGAAGAAGCCAATAATCTCATTGAAGAATGTGAAC...ATCCCATTTATCTGCTTCCAGTGGTGAAACCCCTTGAGAGTATTCTGAAGAAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000556223.1
CDS-3UTR TCA 90 bp TCCAAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCTTCACAGAAGTTATCTaGAGAATCATCATGCTTGGT +
Preference number: 4 (lower is better)
Translates to: SKWGRMTSILDAKSTAFTFTEVI*RIIMLG
Trigger: ACCAAGCATGATGATTCTTCAGATAACTTCTGTGAA...GGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp TCCAAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCTATTATGCCTTTGAATaGAATTCCACTCTTTCGCCT +
Preference number: 4 (lower is better)
Translates to: SKWGRMTSILDAKSTAFTYYAFE*NSTLSP
Trigger: AGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATA...GGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATATTATGGGTCATTTATaGGGCCTCCTTAGCATTTTC +
Preference number: 4 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYIMGHL*GLLSIF
Trigger: GAAAATGCTAAGGAGGCCTCATAAATGACCCATAAT...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATGGATTTAGGAACTGCTaGATTAAAATTACCCAAGCG +
Preference number: 4 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYGFRNC*IKITQA
Trigger: CGCTTGGGTAATTTTAATTCAGCAGTTCCTAAATCC...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp AAGACTGTCATTGCTATTATGCCTTTGAATGAAATTCCACTCTTTCGCCTCCATTTAGATGACTCTCCTTaGGTGGAGCAAAGGAGGTTT +
Preference number: 4 (lower is better)
Translates to: KTVIAIMPLNEIPLFRLHLDDSP*VEQRRF
Trigger: AAACCTCCTTTGCTCCACTCAAGGAGAGTCATCTAA...ATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp TCCAAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCCAATTTCAGCTTTATTaGCCCCCTAAAGTCTACAAA +
Preference number: 4 (lower is better)
Translates to: SKWGRMTSILDAKSTAFTQFQLY*PPKVYK
Trigger: TTTGTAGACTTTAGGGGGTCAATAAAGCTGAAATTG...GGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTTGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR GCA 90 bp AAGACTGTCATTGCTATTATGCCTTTGAATGAAATTCCACTCTTTCGCCTCCATGTCAGGCCTGCAAGATaGATAGGAATTTTCCAAGTG +
Preference number: 4 (lower is better)
Translates to: KTVIAIMPLNEIPLFRLHVRPAR*IGIFQV
Trigger: CACTTGGAAAATTCCTATGCATCTTGCAGGCCTGAC...ATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR GCA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATTGCTTATGTCAGGCCTaGAAGATGCATAGGAATTTT +
Preference number: 4 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYCLCQA*KMHRNF
Trigger: AAAATTCCTATGCATCTTGCAGGCCTGACATAAGCA...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR CCA 90 bp TATTGGCTTCTTCAGAATACTCTCAAGGGGTTTCACCACTGGAAGCAGATAAATTTCATCAGATTGACATaGTTTGACAGCACAGTCCCT +
Preference number: 4 (lower is better)
Translates to: YWLLQNTLKGFHHWKQINFIRLT*FDSTVP
Trigger: AGGGACTGTGCTGTCAAACCATGTCAATCTGATGAA...ATTTATCTGCTTCCAGTGGTGAAACCCCTTGAGAGTATTCTGAAGAAGCCAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000556223.1
CDS-3UTR CCA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATGGGAGTGAAAGTATTTaGAATATAGGTAGGACCTCT +
Preference number: 4 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYGSESI*NIGRTS
Trigger: AGAGGTCCTACCTATATTCCAAATACTTTCACTCCC...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp CTTGAAATATTTCTAAAATGCAGTCGAAAGTCCTCCTTTAGTTTGTGTGCTTCTCAGATTGACATGGTTTaGCAGCACAGTCCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: LEIFLKCSRKSSFSLCASQIDMV*QHSPFF
Trigger: GAAGAAGGGACTGTGCTGTCAAACCATGTCAATCTG...AGAAGCACACAAACTAAAGGAGGACTTTCGACTGCATTTTAGAAATATTTCAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
CDS-3UTR TCA 90 bp ATGGTTCTAAAATTAACCAAAGTAAGGGACACAGGCATTAGAGTAGGTTTTGCATTTCCAGTAAAGAGTTaGAAATCTGGGCGCTCGAAG +
Preference number: 4 (lower is better)
Translates to: MVLKLTKVRDTGIRVGFAFPVKS*KSGRSK
Trigger: CTTCGAGCGCCCAGATTTTCAACTCTTTACTGGAAA...TGCAAAACCTACTCTAATGCCTGTGTCCCTTACTTTGGTTAATTTTAGAACCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp AAGACTGTCATTGCTATTATGCCTTTGAATGAAATTCCACTCTTTCGCCTCCATGCCAAATGTGGCTTCTaGAGAAGTGTAAGTCTGTTT +
Preference number: 4 (lower is better)
Translates to: KTVIAIMPLNEIPLFRLHAKCGF*RSVSLF
Trigger: AAACAGACTTACACTTCTTCAGAAGCCACATTTGGC...ATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR GCA 90 bp ATGGTTCTAAAATTAACCAAAGTAAGGGACACAGGCATTAGAGTAGGTTTTGCAGTTTCACAGAGGAAATaGTTATGTCAGGCCTGCAAG +
Preference number: 4 (lower is better)
Translates to: MVLKLTKVRDTGIRVGFAVSQRK*LCQACK
Trigger: CTTGCAGGCCTGACATAAGCATTTCCTCTGTGAAAC...TGCAAAACCTACTCTAATGCCTGTGTCCCTTACTTTGGTTAATTTTAGAACCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR CCA 90 bp AAGACTGTCATTGCTATTATGCCTTTGAATGAAATTCCACTCTTTCGCCTCCATTTCATCAGATTGACATaGTTTGACAGCACAGTCCCT +
Preference number: 4 (lower is better)
Translates to: KTVIAIMPLNEIPLFRLHFIRLT*FDSTVP
Trigger: AGGGACTGTGCTGTCAAACCATGTCAATCTGATGAA...ATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
CDS-3UTR CCA 90 bp ATGGTTCTAAAATTAACCAAAGTAAGGGACACAGGCATTAGAGTAGGTTTTGCACCAAACAGAGGAGTTTaGCTTTCTCCTGAAAGTTCC +
Preference number: 4 (lower is better)
Translates to: MVLKLTKVRDTGIRVGFAPNRGV*LSPESS
Trigger: GGAACTTTCAGGAGAAAGCCAAACTCCTCTGTTTGG...TGCAAAACCTACTCTAATGCCTGTGTCCCTTACTTTGGTTAATTTTAGAACCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR TCA 90 bp CTTGAAATATTTCTAAAATGCAGTCGAAAGTCCTCCTTTAGTTTGTGTGCTTCTGGAACTTCATCAGATTaGCATGGTTTGACAGCACAG +
Preference number: 4 (lower is better)
Translates to: LEIFLKCSRKSSFSLCASGTSSD*HGLTAQ
Trigger: CTGTGCTGTCAAACCATGTCAATCTGATGAAGTTCC...AGAAGCACACAAACTAAAGGAGGACTTTCGACTGCATTTTAGAAATATTTCAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
CDS-3UTR TCA 90 bp CTTGAAATATTTCTAAAATGCAGTCGAAAGTCCTCCTTTAGTTTGTGTGCTTCTTTTCCAGTAAAGAGTTaGAAATCTGGGCGCTCGAAG +
Preference number: 4 (lower is better)
Translates to: LEIFLKCSRKSSFSLCASFPVKS*KSGRSK
Trigger: CTTCGAGCGCCCAGATTTTCAACTCTTTACTGGAAA...AGAAGCACACAAACTAAAGGAGGACTTTCGACTGCATTTTAGAAATATTTCAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
CDS-3UTR CCA 90 bp CTTGAAATATTTCTAAAATGCAGTCGAAAGTCCTCCTTTAGTTTGTGTGCTTCTTCCCTTCTTCCACACTaGCTGATGTCATTCCAGAAA +
Preference number: 4 (lower is better)
Translates to: LEIFLKCSRKSSFSLCASSLLPH*LMSFQK
Trigger: TTTCTGGAATGACATCAGCCAGTGTGGAAGAAGGGA...AGAAGCACACAAACTAAAGGAGGACTTTCGACTGCATTTTAGAAATATTTCAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
CDS-3UTR CCA 90 bp ATGGTTCTAAAATTAACCAAAGTAAGGGACACAGGCATTAGAGTAGGTTTTGCATTCATCAGATTGACATaGTTTGACAGCACAGTCCCT +
Preference number: 4 (lower is better)
Translates to: MVLKLTKVRDTGIRVGFAFIRLT*FDSTVP
Trigger: AGGGACTGTGCTGTCAAACCATGTCAATCTGATGAA...TGCAAAACCTACTCTAATGCCTGTGTCCCTTACTTTGGTTAATTTTAGAACCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR CCA 90 bp AAGACTGTCATTGCTATTATGCCTTTGAATGAAATTCCACTCTTTCGCCTCCATTATTTTCCAAGCATCTaGTCCCTTGTAACCAGTGTA +
Preference number: 4 (lower is better)
Translates to: KTVIAIMPLNEIPLFRLHYFPSI*SLVTSV
Trigger: TACACTGGTTACAAGGGACCAGATGCTTGGAAAATA...ATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
CDS-3UTR TCA 90 bp AAGACTGTCATTGCTATTATGCCTTTGAATGAAATTCCACTCTTTCGCCTCCATGTTCACATTCTTCAATaGGATTATTGGCTTCTTCAG +
Preference number: 4 (lower is better)
Translates to: KTVIAIMPLNEIPLFRLHVHILQ*DYWLLQ
Trigger: CTGAAGAAGCCAATAATCTCATTGAAGAATGTGAAC...ATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
CDS-3UTR TCA 90 bp AAGACTGTCATTGCTATTATGCCTTTGAATGAAATTCCACTCTTTCGCCTCCATTTCACAGAAGTTATCTaGAGAATCATCATGCTTGGT +
Preference number: 4 (lower is better)
Translates to: KTVIAIMPLNEIPLFRLHFTEVI*RIIMLG
Trigger: ACCAAGCATGATGATTCTTCAGATAACTTCTGTGAA...ATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
CDS-3UTR CCA 90 bp TCAGCTTGTTCACATTCTTCAATGAGATTATTGGCTTCTTCAGAATACTCTCAACTGGAAGCAGATAAATaGGATAGTAGGTACAACGGA +
Preference number: 4 (lower is better)
Translates to: SACSHSSMRLLASSEYSQLEADK*DSRYNG
Trigger: TCCGTTGTACCTACTATCCCATTTATCTGCTTCCAG...TTGAGAGTATTCTGAAGAAGCCAATAATCTCATTGAAGAATGTGAACAAGCTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000556223.1
3UTR CAA 72 bp TTTTCACAATGTTTAGAAATCTCCTGTGCCTTTGAGTaGTTATTGTACGTTTCTACACACAAAAACAACCCA +
Preference number: 4 (lower is better)
Translates to: FSQCLEISCAFE*LLYVSTHKNNP
Trigger: TGGGTTGTTTTTGTGTGTAGAAACGTACAATAACAACTCAAAGGCACAGGAGATTTCTAAACATTGTGAAAA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS CCA 90 bp CCAGCCGCGGCCCATTGCAGCTCCGGCAGCTTGTCGCCCCACGCTTaGGAGGCCAGTCCGCACGCTCGGTCGCGGGCCGTGCGCCCTCAG +
Preference number: 5 (lower is better)
Translates to: PAAAHCSSGSLSPHA*EASPHARSRAVRPQ
Trigger: CTGAGGGCGCACGGCCCGCGACCGAGCGTGCGGACTGGCCTCCCAAGCGTGGGGCGACAAGCTGCCGGAGCTGCAATGGGCCGCGGCTGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
ENST00000629528.2
CDS GCA 90 bp CACGGCGCCCAGGAGGCCAAACAAGAATCCCCAGCCGCGGCCCATTaGAGCTCCGGCAGCTTGTCGCCCCACGCTTGGGAGGCCAGTCCG +
Preference number: 5 (lower is better)
Translates to: HGAQEAKQESPAAAH*SSGSLSPHAWEASP
Trigger: CGGACTGGCCTCCCAAGCGTGGGGCGACAAGCTGCCGGAGCTGCAATGGGCCGCGGCTGGGGATTCTTGTTTGGCCTCCTGGGCGCCGTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000554251.5
ENST00000556039.5
ENST00000556223.1
ENST00000629528.2
CDS GCA 90 bp CCACTAACCTGGCAGAAGCACCTCTGTGCCGCTGTCTCCGGGGGCTaGTCCTCTCCGTGGCCCGAGCTGAGCAGCCACACGGCGCCCAGG +
Preference number: 5 (lower is better)
Translates to: PLTWQKHLCAAVSGG*SSPWPELSSHTAPR
Trigger: CCTGGGCGCCGTGTGGCTGCTCAGCTCGGGCCACGGAGAGGAGCAGCCCCCGGAGACAGCGGCACAGAGGTGCTTCTGCCAGGTTAGTGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
ENST00000556223.1
ENST00000629528.2
CDS TCA 90 bp TCTGTGCCGCTGTCTCCGGGGGCTGCTCCTCTCCGTGGCCCGAGCTaGGCAGCCACACGGCGCCCAGGAGGCCAAACAAGAATCCCCAGC +
Preference number: 5 (lower is better)
Translates to: SVPLSPGAAPLRGPS*AATRRPGGQTRIPS
Trigger: GCTGGGGATTCTTGTTTGGCCTCCTGGGCGCCGTGTGGCTGCTCAGCTCGGGCCACGGAGAGGAGCAGCCCCCGGAGACAGCGGCACAGA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000554251.5
ENST00000556039.5
ENST00000556223.1
ENST00000629528.2
CDS GCA 90 bp AGGTTTACCTGGCAGAAGCACCTCTGTGCCGCTGTCTCCGGGGGCTaGTCCTCTCCGTGGCCCGAGCTGAGCAGCCACACGGCGCCCAGG +
Preference number: 5 (lower is better)
Translates to: RFTWQKHLCAAVSGG*SSPWPELSSHTAPR
Trigger: CCTGGGCGCCGTGTGGCTGCTCAGCTCGGGCCACGGAGAGGAGCAGCCCCCGGAGACAGCGGCACAGAGGTGCTTCTGCCAGGTAAACCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000554251.5
CDS-3UTR CAA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATCCCAGCCGCGGCCCATaGCAGCTCCGGCAGCTTGTC +
Preference number: 5 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYPSRGP*QLRQLV
Trigger: GACAAGCTGCCGGAGCTGCAATGGGCCGCGGCTGGG...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
CDS-3UTR CAA 90 bp GATTATTGGCTTCTTCAGAATACTCTCAAGGGGTTTCACCACTGGAAGCAGATATGCAGCTCCGGCAGCTaGTCGCCCCACGCTTGGGAG +
Preference number: 5 (lower is better)
Translates to: DYWLLQNTLKGFHHWKQICSSGS*SPHAWE
Trigger: CTCCCAAGCGTGGGGCGACAAGCTGCCGGAGCTGCA...TATCTGCTTCCAGTGGTGAAACCCCTTGAGAGTATTCTGAAGAAGCCAATAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000556223.1
CDS-3UTR CAA 90 bp AAGACTGTCATTGCTATTATGCCTTTGAATGAAATTCCACTCTTTCGCCTCCATCCCAGCCGCGGCCCATaGCAGCTCCGGCAGCTTGTC +
Preference number: 5 (lower is better)
Translates to: KTVIAIMPLNEIPLFRLHPSRGP*QLRQLV
Trigger: GACAAGCTGCCGGAGCTGCAATGGGCCGCGGCTGGG...ATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
CDS-3UTR CAA 90 bp AAGACTGTCATTGCTATTATGCCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGCAGCTCCGGCAGCTaGTCGCCCCACGCTTGGGAG +
Preference number: 5 (lower is better)
Translates to: KTVIAIMPLNEIPLFRLHCSSGS*SPHAWE
Trigger: CTCCCAAGCGTGGGGCGACAAGCTGCCGGAGCTGCA...ATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
CDS-3UTR CAA 90 bp CTTGAAATATTTCTAAAATGCAGTCGAAAGTCCTCCTTTAGTTTGTGTGCTTCTTGCAGCTCCGGCAGCTaGTCGCCCCACGCTTGGGAG +
Preference number: 5 (lower is better)
Translates to: LEIFLKCSRKSSFSLCASCSSGS*SPHAWE
Trigger: CTCCCAAGCGTGGGGCGACAAGCTGCCGGAGCTGCA...AGAAGCACACAAACTAAAGGAGGACTTTCGACTGCATTTTAGAAATATTTCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
CDS-3UTR CAA 90 bp GTTTCACCAGAACATTCGGTGGAGGAAACACATCAGAAGACCTTGTACACCAAACTCTTCACTTGTCCCTaGACCAGAAGCCAAAGGATT +
Preference number: 5 (lower is better)
Translates to: VSPEHSVEETHQKTLYTKLFTCP*TRSQRI
Trigger: AATCCTTTGGCTTCTGGTCAAGGGACAAGTGAAGAG...TTTGGTGTACAAGGTCTTCTGATGTGTTTCCTCCACCGAATGTTCTGGTGAAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR CAA 90 bp GTTTCACCAGAACATTCGGTGGAGGAAACACATCAGAAGACCTTGTACACCAAACAACAGGCAGATGGATaGAGGAGTCTGGCTAAAGAT +
Preference number: 5 (lower is better)
Translates to: VSPEHSVEETHQKTLYTKQQADG*RSLAKD
Trigger: ATCTTTAGCCAGACTCCTCAATCCATCTGCCTGTTG...TTTGGTGTACAAGGTCTTCTGATGTGTTTCCTCCACCGAATGTTCTGGTGAAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS TCA 90 bp CAGCCTGCTGCTTGGTCTTTAAAAGGCTTTAGCATTGCCTTAGGTTaGCCCAGTCTCATAACGTTCTGGTTAAAGTGTTTTACAGGAGGT +
Preference number: 5 (lower is better)
Translates to: QPAAWSLKGFSIALG*PSLITFWLKCFTGG
Trigger: ACCTCCTGTAAAACACTTTAACCAGAACGTTATGAGACTGGGTCAACCTAAGGCAATGCTAAAGCCTTTTAAAGACCAAGCAGCAGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000556358.5
CDS-3UTR CAA 90 bp TCCAAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCACACATCAGAAGACCTaGTACACCAAACAGAGGAGT +
Preference number: 5 (lower is better)
Translates to: SKWGRMTSILDAKSTAFTTHQKT*YTKQRS
Trigger: ACTCCTCTGTTTGGTGTACAAGGTCTTCTGATGTGT...GGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR CAA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATAGGAACTTCATCAGATaGACATGGTTTGACAGCACA +
Preference number: 5 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYRNFIR*TWFDST
Trigger: TGTGCTGTCAAACCATGTCAATCTGATGAAGTTCCT...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
CDS-3UTR CAA 90 bp TCCAAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCTCCTGTGCCTTTGAGTaGTTATTGTACGTTTCTACA +
Preference number: 5 (lower is better)
Translates to: SKWGRMTSILDAKSTAFTSCAFE*LLYVST
Trigger: TGTAGAAACGTACAATAACAACTCAAAGGCACAGGA...GGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR CAA 90 bp AAGACTGTCATTGCTATTATGCCTTTGAATGAAATTCCACTCTTTCGCCTCCATATACCAAGTATGTGCTaGGCACTGTACCAGGCCTTA +
Preference number: 5 (lower is better)
Translates to: KTVIAIMPLNEIPLFRLHIPSMC*ALYQAL
Trigger: TAAGGCCTGGTACAGTGCCAAGCACATACTTGGTAT...ATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR CAA 90 bp TCCAAGTGGGGAAGGATGACTAGCATACTTGATGCAAAGAGTACAGCATTTACCTCCATCAAATCGCTGTaGAAATTCTGTAATGTTGTG +
Preference number: 5 (lower is better)
Translates to: SKWGRMTSILDAKSTAFTSIKSL*KFCNVV
Trigger: CACAACATTACAGAATTTCAACAGCGATTTGATGGA...GGTAAATGCTGTACTCTTTGCATCAAGTATGCTAGTCATCCTTCCCCACTTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR CAA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATTCCATCAAATCGCTGTaGAAATTCTGTAATGTTGTG +
Preference number: 5 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYSIKSL*KFCNVV
Trigger: CACAACATTACAGAATTTCAACAGCGATTTGATGGA...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
CDS-3UTR CAA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATGCCTTTGAGTTGTTATaGTACGTTTCTACACACAAA +
Preference number: 5 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYAFELL*YVSTHK
Trigger: TTTGTGTGTAGAAACGTACAATAACAACTCAAAGGC...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR CAA 90 bp CCTTTGAATGAAATTCCACTCTTTCGCCTCCATTGTCCAGAAACAGGCACATATAAAGAGGGCACGATTTaGAGGTATATAGCTTCTTTT +
Preference number: 5 (lower is better)
Translates to: PLNEIPLFRLHCPETGTYKEGTI*RYIASF
Trigger: AAAAGAAGCTATATACCTCAAAATCGTGCCCTCTTT...ATATGTGCCTGTTTCTGGACAATGGAGGCGAAAGAGTGGAATTTCATTCAAAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR CAA 90 bp CTTGAAATATTTCTAAAATGCAGTCGAAAGTCCTCCTTTAGTTTGTGTGCTTCTAGGAACTTCATCAGATaGACATGGTTTGACAGCACA +
Preference number: 5 (lower is better)
Translates to: LEIFLKCSRKSSFSLCASRNFIR*TWFDST
Trigger: TGTGCTGTCAAACCATGTCAATCTGATGAAGTTCCT...AGAAGCACACAAACTAAAGGAGGACTTTCGACTGCATTTTAGAAATATTTCAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
CDS-3UTR CAA 90 bp TCAGCTTGTTCACATTCTTCAATGAGATTATTGGCTTCTTCAGAATACTCTCAAAGGAACTTCATCAGATaGACATGGTTTGACAGCACA +
Preference number: 5 (lower is better)
Translates to: SACSHSSMRLLASSEYSQRNFIR*TWFDST
Trigger: TGTGCTGTCAAACCATGTCAATCTGATGAAGTTCCT...TTGAGAGTATTCTGAAGAAGCCAATAATCTCATTGAAGAATGTGAACAAGCTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000556223.1
CDS-3UTR CAA 90 bp AAGACTGTCATTGCTATTATGCCTTTGAATGAAATTCCACTCTTTCGCCTCCATAAGAATGGTAACACTTaGGATAAAGCCCTTAGTTCT +
Preference number: 5 (lower is better)
Translates to: KTVIAIMPLNEIPLFRLHKNGNT*DKALSS
Trigger: AGAACTAAGGGCTTTATCCAAAGTGTTACCATTCTT...ATGGAGGCGAAAGAGTGGAATTTCATTCAAAGGCATAATAGCAATGACAGTCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
CDS TCA 90 bp AGAGACCTAAGAAAAAGCAGTGAAACGCAAATAAGTAATTTACCTTaGCCAGAAGCCAAAGGATTTAAAGGTCTTTTAATTGTCTGTGGC +
Preference number: 5 (lower is better)
Translates to: RDLRKSSETQISNLP*PEAKGFKGLLIVCG
Trigger: GCCACAGACAATTAAAAGACCTTTAAATCCTTTGGCTTCTGGTCAAGGTAAATTACTTATTTGCGTTTCACTGCTTTTTCTTAGGTCTCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000554019.5
ENST00000556039.5
ENST00000629528.2
CDS-3UTR CAA 90 bp ATGGTTCTAAAATTAACCAAAGTAAGGGACACAGGCATTAGAGTAGGTTTTGCAAAATCTCCTGTGCCTTaGAGTTGTTATTGTACGTTT +
Preference number: 5 (lower is better)
Translates to: MVLKLTKVRDTGIRVGFAKSPVP*SCYCTF
Trigger: AAACGTACAATAACAACTCAAAGGCACAGGAGATTT...TGCAAAACCTACTCTAATGCCTGTGTCCCTTACTTTGGTTAATTTTAGAACCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000395686.8
CDS-3UTR CAA 90 bp CTTGAAATATTTCTAAAATGCAGTCGAAAGTCCTCCTTTAGTTTGTGTGCTTCTTCCATCAAATCGCTGTaGAAATTCTGTAATGTTGTG +
Preference number: 5 (lower is better)
Translates to: LEIFLKCSRKSSFSLCASSIKSL*KFCNVV
Trigger: CACAACATTACAGAATTTCAACAGCGATTTGATGGA...AGAAGCACACAAACTAAAGGAGGACTTTCGACTGCATTTTAGAAATATTTCAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
CDS-3UTR CAA 90 bp CTTGAAATATTTCTAAAATGCAGTCGAAAGTCCTCCTTTAGTTTGTGTGCTTCTAAGAATGGTAACACTTaGGATAAAGCCCTTAGTTCT +
Preference number: 5 (lower is better)
Translates to: LEIFLKCSRKSSFSLCASKNGNT*DKALSS
Trigger: AGAACTAAGGGCTTTATCCAAAGTGTTACCATTCTT...AGAAGCACACAAACTAAAGGAGGACTTTCGACTGCATTTTAGAAATATTTCAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000554019.5
ENST00000556039.5
CDS CCA 72 bp TGCCTCTCAGCGATCGCCACCTCGCGACCCAGCCTGTaGACGTGCCGCGGCGCCCGCGCCGGCAGCCCGGGG +
Preference number: 6 (lower is better)
Translates to: CLSAIATSRPSL*TCRGARAGSPG
Trigger: CCCCGGGCTGCCGGCGCGGGCGCCGCGGCACGTCCACAGGCTGGGTCGCGAGGTGGCGATCGCTGAGAGGCA
79% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000554019.5
ENST00000556039.5
ENST00000629528.2
CDS CAA 90 bp CCCAGCCGCGGCCCATTGCAGCTCCGGCAGCTTGTCGCCCCACGCTaGGGAGGCCAGTCCGCACGCTCGGTCGCGGGCCGTGCGCCCTCA +
Preference number: 6 (lower is better)
Translates to: PSRGPLQLRQLVAPR*GGQSARSVAGRAPS
Trigger: TGAGGGCGCACGGCCCGCGACCGAGCGTGCGGACTGGCCTCCCAAGCGTGGGGCGACAAGCTGCCGGAGCTGCAATGGGCCGCGGCTGGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
ENST00000629528.2
CDS CCA 72 bp GCCCATTGCAGCTCCGGCAGCTTGTCGCCCCACGCTTaGGAGGCCAGTCCGCACGCTCGGTCGCGGGCCGTG +
Preference number: 6 (lower is better)
Translates to: AHCSSGSLSPHA*EASPHARSRAV
Trigger: CACGGCCCGCGACCGAGCGTGCGGACTGGCCTCCCAAGCGTGGGGCGACAAGCTGCCGGAGCTGCAATGGGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
ENST00000629528.2
CDS CAA 72 bp GAATCCCCAGCCGCGGCCCATTGCAGCTCCGGCAGCTaGTCGCCCCACGCTTGGGAGGCCAGTCCGCACGCT +
Preference number: 6 (lower is better)
Translates to: ESPAAAHCSSGS*SPHAWEASPHA
Trigger: AGCGTGCGGACTGGCCTCCCAAGCGTGGGGCGACAAGCTGCCGGAGCTGCAATGGGCCGCGGCTGGGGATTC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
ENST00000629528.2
CDS CAA 90 bp GCCAAACAAGAATCCCCAGCCGCGGCCCATTGCAGCTCCGGCAGCTaGTCGCCCCACGCTTGGGAGGCCAGTCCGCACGCTCGGTCGCGG +
Preference number: 6 (lower is better)
Translates to: AKQESPAAAHCSSGS*SPHAWEASPHARSR
Trigger: CCGCGACCGAGCGTGCGGACTGGCCTCCCAAGCGTGGGGCGACAAGCTGCCGGAGCTGCAATGGGCCGCGGCTGGGGATTCTTGTTTGGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000556039.5
ENST00000629528.2
CDS CAA 90 bp ACACGGCGCCCAGGAGGCCAAACAAGAATCCCCAGCCGCGGCCCATaGCAGCTCCGGCAGCTTGTCGCCCCACGCTTGGGAGGCCAGTCC +
Preference number: 6 (lower is better)
Translates to: TRRPGGQTRIPSRGP*QLRQLVAPRLGGQS
Trigger: GGACTGGCCTCCCAAGCGTGGGGCGACAAGCTGCCGGAGCTGCAATGGGCCGCGGCTGGGGATTCTTGTTTGGCCTCCTGGGCGCCGTGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000554251.5
ENST00000556039.5
ENST00000556223.1
ENST00000629528.2
CDS GCA 72 bp CTGGAGACGCAACCCGACGCGCACAACCCCAGACCCTaGGCGGGAGTCGGGGGTCCTTCCAGTTCCCAGAGC +
Preference number: 6 (lower is better)
Translates to: LETQPDAHNPRP*AGVGGPSSSQS
Trigger: GCTCTGGGAACTGGAAGGACCCCCGACTCCCGCGCAGGGTCTGGGGTTGTGCGCGTCGGGTTGCGTCTCCAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000556039.5
CDS GCA 72 bp CAGGAGGCCAAACAAGAATCCCCAGCCGCGGCCCATTaGAGCTCCGGCAGCTTGTCGCCCCACGCTTGGGAG +
Preference number: 6 (lower is better)
Translates to: QEAKQESPAAAH*SSGSLSPHAWE
Trigger: CTCCCAAGCGTGGGGCGACAAGCTGCCGGAGCTGCAATGGGCCGCGGCTGGGGATTCTTGTTTGGCCTCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000554251.5
ENST00000556039.5
ENST00000556223.1
ENST00000629528.2
CDS CAA 72 bp CCAGGAGGCCAAACAAGAATCCCCAGCCGCGGCCCATaGCAGCTCCGGCAGCTTGTCGCCCCACGCTTGGGA +
Preference number: 6 (lower is better)
Translates to: PGGQTRIPSRGP*QLRQLVAPRLG
Trigger: TCCCAAGCGTGGGGCGACAAGCTGCCGGAGCTGCAATGGGCCGCGGCTGGGGATTCTTGTTTGGCCTCCTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000554251.5
ENST00000556039.5
ENST00000556223.1
ENST00000629528.2
CDS CCA 72 bp TTCTTCGTAGATGACATTCCATATTTTCCAAGCATCTaGTCCCTTGTAACCAGTGTAGCGCTCAGGATTAAG +
Preference number: 6 (lower is better)
Translates to: FFVDDIPYFPSI*SLVTSVALRIK
Trigger: CTTAATCCTGAGCGCTACACTGGTTACAAGGGACCAGATGCTTGGAAAATATGGAATGTCATCTACGAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000395686.8
ENST00000554019.5
ENST00000554251.5
ENST00000556039.5
ENST00000629528.2
CDS TCA 72 bp GCTTGGTCTTTAAAAGGCTTTAGCATTGCCTTAGGTTaGCCCAGTCTCATAACGTTCTGGTTAAAGTGTTTT +
Preference number: 6 (lower is better)
Translates to: AWSLKGFSIALG*PSLITFWLKCF
Trigger: AAAACACTTTAACCAGAACGTTATGAGACTGGGTCAACCTAAGGCAATGCTAAAGCCTTTTAAAGACCAAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000556358.5
CDS TCA 72 bp TGGGGTACCAAAAATGAGAACAGCACTAATATTCATTaGTTCTACATACCAGATCCTTACATACACAATCTC +
Preference number: 6 (lower is better)
Translates to: WGTKNENSTNIH*FYIPDPYIHNL
Trigger: GAGATTGTGTATGTAAGGATCTGGTATGTAGAATCAATGAATATTAGTGCTGTTCTCATTTTTGGTACCCCA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000555069.1