Pregenerated sensors for EMB (Homo sapiens)
Ensembl gene IDs: ENSG00000170571Ensembl transcript IDs: ENST00000303221.10, ENST00000506190.1, ENST00000508934.5, ENST00000514111.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CAAATAAATGTGGAGTTATTTAAGCATGTAAGATGGTACATGCTCTACCAGGTAGCAATGCTTGTTGCTTaGAAATTGTATGAGCCTCAA | + |
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Preference number: 2 (lower is better) Translates to: QINVELFKHVRWYMLYQVAMLVA*KLYEPQ Trigger: TTGAGGCTCATACAATTTTCAAGCAACAAGCATTGC...TACCTGGTAGAGCATGTACCATCTTACATGCTTAAATAACTCCACATTTATTTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000303221.10 |
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| 3UTR-3UTR CCA 90 bp | CAAATAAATGTGGAGTTATTTAAGCATGTAAGATGGTACATGCTCTACCAGGTATTGTATGAGCCTCAATaGTTAGTGGTGGTAAAATGG | + |
|
Preference number: 2 (lower is better) Translates to: QINVELFKHVRWYMLYQVLYEPQ*LVVVKW Trigger: CCATTTTACCACCACTAACCATTGAGGCTCATACAA...TACCTGGTAGAGCATGTACCATCTTACATGCTTAAATAACTCCACATTTATTTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000303221.10 |
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| 3UTR-3UTR CCA 90 bp | CAAATAAATGTGGAGTTATTTAAGCATGTAAGATGGTACATGCTCTACCAGGTACAGTGGGACACTTCATaGTCATTTATGTTATCTAGT | + |
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Preference number: 2 (lower is better) Translates to: QINVELFKHVRWYMLYQVQWDTS*SFMLSS Trigger: ACTAGATAACATAAATGACCATGAAGTGTCCCACTG...TACCTGGTAGAGCATGTACCATCTTACATGCTTAAATAACTCCACATTTATTTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000303221.10 |
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| 3UTR-3UTR CCA 90 bp | CAAATAAATGTGGAGTTATTTAAGCATGTAAGATGGTACATGCTCTACCAGGTATCTAGTTCAAGAGACTaGATAGAGATTAGCAATTTG | + |
|
Preference number: 2 (lower is better) Translates to: QINVELFKHVRWYMLYQVSSSRD*IEISNL Trigger: CAAATTGCTAATCTCTATCCAGTCTCTTGAACTAGA...TACCTGGTAGAGCATGTACCATCTTACATGCTTAAATAACTCCACATTTATTTG 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000303221.10 |
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| 3UTR TCA 72 bp | GTTAGTCAAGCAGGTAGAAGTGTGAAGAGCACTTTCTaGGCGGAATCTCCATGTGCCAAGTCTAGTTCAAGA | + |
|
Preference number: 3 (lower is better) Translates to: VSQAGRSVKSTF*AESPCAKSSSR Trigger: TCTTGAACTAGACTTGGCACATGGAGATTCCGCTCAGAAAGTGCTCTTCACACTTCTACCTGCTTGACTAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000303221.10 |
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| 3UTR-3UTR CAA 90 bp | CAAATAAATGTGGAGTTATTTAAGCATGTAAGATGGTACATGCTCTACCAGGTACTTCTGTTCTTAAAGTaGTTGCCCTTTGAGCAGTGG | + |
|
Preference number: 3 (lower is better) Translates to: QINVELFKHVRWYMLYQVLLFLK*LPFEQW Trigger: CCACTGCTCAAAGGGCAACAACTTTAAGAACAGAAG...TACCTGGTAGAGCATGTACCATCTTACATGCTTAAATAACTCCACATTTATTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000303221.10 |
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| CDS-3UTR CCA 90 bp | CAAATAAATGTGGAGTTATTTAAGCATGTAAGATGGTACATGCTCTACCAGGTATGTAAAAGGCGAATCTaGGGCACTGCCGTCCGCCGA | + |
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Preference number: 4 (lower is better) Translates to: QINVELFKHVRWYMLYQVCKRRI*GTAVRR Trigger: TCGGCGGACGGCAGTGCCCCAGATTCGCCTTTTACA...TACCTGGTAGAGCATGTACCATCTTACATGCTTAAATAACTCCACATTTATTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000303221.10 |
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| CDS-3UTR CCA 90 bp | CAAATAAATGTGGAGTTATTTAAGCATGTAAGATGGTACATGCTCTACCAGGTATCACTCTCGCCTAATTaGAATAGTGCACGGCACCAG | + |
|
Preference number: 4 (lower is better) Translates to: QINVELFKHVRWYMLYQVSLSPN*NSARHQ Trigger: CTGGTGCCGTGCACTATTCCAATTAGGCGAGAGTGA...TACCTGGTAGAGCATGTACCATCTTACATGCTTAAATAACTCCACATTTATTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000303221.10 |
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| CDS-3UTR TCA 90 bp | CAAATAAATGTGGAGTTATTTAAGCATGTAAGATGGTACATGCTCTACCAGGTAACCATTGCTATCATCTaGTTTCAGCTGTTCAATCTG | + |
|
Preference number: 4 (lower is better) Translates to: QINVELFKHVRWYMLYQVTIAII*FQLFNL Trigger: CAGATTGAACAGCTGAAATCAGATGATAGCAATGGT...TACCTGGTAGAGCATGTACCATCTTACATGCTTAAATAACTCCACATTTATTTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000303221.10 |
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| CDS-3UTR TCA 90 bp | CAAATAAATGTGGAGTTATTTAAGCATGTAAGATGGTACATGCTCTACCAGGTAGTCAGTGATATGTTATaGCTCTCCAAGGAAAAGTTA | + |
|
Preference number: 4 (lower is better) Translates to: QINVELFKHVRWYMLYQVVSDML*LSKEKL Trigger: TAACTTTTCCTTGGAGAGTCATAACATATCACTGAC...TACCTGGTAGAGCATGTACCATCTTACATGCTTAAATAACTCCACATTTATTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000303221.10 |
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| CDS CCA 72 bp | GAAGATACCAAGGAATCAGATGAGAGAGCCAGAAAATaGAAAGATATGAAGAGGCAGAGAGAGAAGATGAAA | + |
|
Preference number: 6 (lower is better) Translates to: EDTKESDERARK*KDMKRQREKMK Trigger: TTTCATCTTCTCTCTCTGCCTCTTCATATCTTTCCATTTTCTGGCTCTCTCATCTGATTCCTTGGTATCTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000514111.1 |
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| CDS TCA 72 bp | TGGGTATACAAGGTGCTTCCAGTCAGTGATATGTTATaGCTCTCCAAGGAAAAGTTATTTGCCATTATTTCT | + |
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Preference number: 6 (lower is better) Translates to: WVYKVLPVSDML*LSKEKLFAIIS Trigger: AGAAATAATGGCAAATAACTTTTCCTTGGAGAGTCATAACATATCACTGACTGGAAGCACCTTGTATACCCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508934.5 |
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| CDS TCA 72 bp | ACTGGCATACTAGAATGTTCAGTCAGTGATATGTTATaGCTCTCCAAGGAAAAGTTATTTGCCATTATTTCT | + |
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Preference number: 6 (lower is better) Translates to: TGILECSVSDML*LSKEKLFAIIS Trigger: AGAAATAATGGCAAATAACTTTTCCTTGGAGAGTCATAACATATCACTGACTGAACATTCTAGTATGCCAGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000303221.10 ENST00000506190.1 ENST00000514111.1 |
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