Pregenerated sensors for EIF4B (Homo sapiens)
Ensembl gene IDs: ENSG00000063046Ensembl transcript IDs: ENST00000549077.5, ENST00000549592.1, ENST00000550025.1, ENST00000550390.1, ENST00000550704.5
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CATTCTGCTTGCTCTAAATTCAAGGTTTCAGGTGAGAAAAGTCATGCCCCTGGATCAAAACAGGACCCTTaGTCTGATTGTCTGCTTTTT | + |
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Preference number: 2 (lower is better) Translates to: HSACSKFKVSGEKSHAPGSKQDP*SDCLLF Trigger: AAAAAGCAGACAATCAGACCAAGGGTCCTGTTTTGA...TCCAGGGGCATGACTTTTCTCACCTGAAACCTTGAATTTAGAGCAAGCAGAATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000550704.5 |
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| CDS-3UTR GCA 90 bp | AACGATCATCCCTGTCTCAGGCCCCATAAGTACATGCTCCAATTCAACCCCAGGGGCCCCATAAGTACATaGTCCAATTCAACCCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: NDHPCLRPHKYMLQFNPRGPIST*SNSTPG Trigger: ACCTGGGGTTGAATTGGAGCATGTACTTATGGGGCC...CCTGGGGTTGAATTGGAGCATGTACTTATGGGGCCTGAGACAGGGATGATCGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENST00000550390.1 |
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| CDS-3UTR CCA 90 bp | CAAAAGAACGATCATCCCTGTCTCAGGCCCCATAAGTACATGCTCCAATTCAACCAATTCAACCCCAGGTaGCTCTTTTCCTCCCGTTTT | + |
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Preference number: 4 (lower is better) Translates to: QKNDHPCLRPHKYMLQFNQFNPR*LFSSRF Trigger: AAAACGGGAGGAAAAGAGCCACCTGGGGTTGAATTG...GTTGAATTGGAGCATGTACTTATGGGGCCTGAGACAGGGATGATCGTTCTTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000550390.1 |
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| CDS-3UTR TCA 90 bp | TACTTCGTTATCCATTCTGCTTGCTCTAAATTCAAGGTTTCAGGTGAGAAAAGTATTCAAGGTTTCAGGTaGGAAAAGTCATGCCCCTGG | + |
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Preference number: 4 (lower is better) Translates to: YFVIHSACSKFKVSGEKSIQGFR*EKSCPW Trigger: CCAGGGGCATGACTTTTCTCACCTGAAACCTTGAAT...ACTTTTCTCACCTGAAACCTTGAATTTAGAGCAAGCAGAATGGATAACGAAGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000550704.5 |
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| CDS-3UTR GCA 90 bp | CATTCTGCTTGCTCTAAATTCAAGGTTTCAGGTGAGAAAAGTCATGCCCCTGGAGTTATCCATTCTGCTTaGTCTAAATTCAAGGTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: HSACSKFKVSGEKSHAPGVIHSA*SKFKVS Trigger: TGAAACCTTGAATTTAGAGCAAGCAGAATGGATAAC...TCCAGGGGCATGACTTTTCTCACCTGAAACCTTGAATTTAGAGCAAGCAGAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000550704.5 |
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| CDS-3UTR CCA 90 bp | TCTCGATACTTCGTTATCCATTCTGCTTGCTCTAAATTCAAGGTTTCAGGTGAGTCAAAACAGGACCCTTaGTCTGATTGTCTGCTTTTT | + |
|
Preference number: 4 (lower is better) Translates to: SRYFVIHSACSKFKVSGESKQDP*SDCLLF Trigger: AAAAAGCAGACAATCAGACCAAGGGTCCTGTTTTGA...CTCACCTGAAACCTTGAATTTAGAGCAAGCAGAATGGATAACGAAGTATCGAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000550704.5 |
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| CDS TCA 90 bp | GTTACCCCCTACCATACTGCCAATATGTGGCAAAAGGGAAGCCTCTaGCTTACAGTATTTGCAGATTTGTGCGGCATTAGTACTCCCATC | + |
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Preference number: 5 (lower is better) Translates to: VTPYHTANMWQKGSL*LTVFADLCGISTPI Trigger: GATGGGAGTACTAATGCCGCACAAATCTGCAAATACTGTAAGTCAGAGGCTTCCCTTTTGCCACATATTGGCAGTATGGTAGGGGGTAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000549592.1 |
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| CDS TCA 90 bp | GCAAGTAAAAGTATCAATGTCCCTCTCCTAAGATTTCCCTTAAGCTaGAGAAAATTGTGCCCACATGTACTGAGGGAAACTAACCTCACC | + |
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Preference number: 5 (lower is better) Translates to: ASKSINVPLLRFPLS*RKLCPHVLRETNLT Trigger: GGTGAGGTTAGTTTCCCTCAGTACATGTGGGCACAATTTTCTTCAGCTTAAGGGAAATCTTAGGAGAGGGACATTGATACTTTTACTTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000549592.1 |
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| CDS CAA 72 bp | ATTAACCAACCTTTTGCCCCATTATGCACAAATCCCTaGAGTGACCTTGAACGTCTGGGCATAGCAGAAGCA | + |
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Preference number: 6 (lower is better) Translates to: INQPFAPLCTNP*SDLERLGIAEA Trigger: TGCTTCTGCTATGCCCAGACGTTCAAGGTCACTCAAGGGATTTGTGCATAATGGGGCAAAAGGTTGGTTAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000549077.5 ENST00000550025.1 |
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