Pregenerated sensors for DSCAM-IT1 (Homo sapiens)

Ensembl gene IDs: ENSG00000233756

Ensembl transcript IDs: ENST00000440363.1, ENST00000441910.5

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CCAGTCCTCATTCCTCCTTCTTATAGCAATCACAGGGCACTTGGCTaGAGAACTCAGGCAGGAGCAGCGCCGTGGGATAAGTGGAGCCCG	+
Preference number: 5 (lower is better) Translates to: PVLIPPSYSNHRALG*RTQAGAAPWDKWSP Trigger: CGGGCTCCACTTATCCCACGGCGCTGCTCCTGCCTGAGTTCTGCAGCCAAGTGCCCTGTGATTGCTATAAGAAGGAGGAATGAGGACTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440363.1
CDS TCA 90 bp	CAAAATTCCCCAGATGCAGCATGCTCCCTCAGTGTGGAAGGTCCATaGGTAAGGACCATGAAAGTCACAGCTGGATTTAGGGCAGAGAGT	+
Preference number: 5 (lower is better) Translates to: QNSPDAACSLSVEGP*VRTMKVTAGFRAES Trigger: ACTCTCTGCCCTAAATCCAGCTGTGACTTTCATGGTCCTTACTCATGGACCTTCCACACTGAGGGAGCATGCTGCATCTGGGGAATTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000440363.1 ENST00000441910.5
CDS TCA 90 bp	AGGCATTCTCGTGAACTCCTCTCCACATTGTGTCTTTGGGTTTCATaGCTACTATCACATGAGGTGAGATTTCATTTGTGTTCTCTTTTT	+
Preference number: 5 (lower is better) Translates to: RHSRELLSTLCLWVS*LLSHEVRFHLCSLF Trigger: AAAAAGAGAACACAAATGAAATCTCACCTCATGTGATAGTAGTCATGAAACCCAAAGACACAATGTGGAGAGGAGTTCACGAGAATGCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000440363.1 ENST00000441910.5
CDS TCA 72 bp	TCACAGCTGGATTTAGGGCAGAGAGTTACTGTTCACTaGGCATTCGGCCTTCACTGTACTTGTCAGTGGGGG	+
Preference number: 6 (lower is better) Translates to: SQLDLGQRVTVH*AFGLHCTCQWG Trigger: CCCCCACTGACAAGTACAGTGAAGGCCGAATGCTCAGTGAACAGTAACTCTCTGCCCTAAATCCAGCTGTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000440363.1 ENST00000441910.5
CDS TCA 72 bp	CCAGATGCAGCATGCTCCCTCAGTGTGGAAGGTCCATaGGTAAGGACCATGAAAGTCACAGCTGGATTTAGG	+
Preference number: 6 (lower is better) Translates to: PDAACSLSVEGP*VRTMKVTAGFR Trigger: CCTAAATCCAGCTGTGACTTTCATGGTCCTTACTCATGGACCTTCCACACTGAGGGAGCATGCTGCATCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000440363.1 ENST00000441910.5
CDS TCA 72 bp	TCCAAGCTTCCAGACTGTGAGCTAGCGCAGAGACAATaGTCAGAGAGATTGACTGGGAGAATGGAGAGGTGG	+
Preference number: 6 (lower is better) Translates to: SKLPDCELAQRQ*SERLTGRMERW Trigger: CCACCTCTCCATTCTCCCAGTCAATCTCTCTGATCATTGTCTCTGCGCTAGCTCACAGTCTGGAAGCTTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440363.1
CDS TCA 72 bp	GGAGAAACAAAAGAGGCTCTCCAAGCTTCCAGACTGTaGGCTAGCGCAGAGACAATGATCAGAGAGATTGAC	+
Preference number: 6 (lower is better) Translates to: GETKEALQASRL*ASAETMIREID Trigger: GTCAATCTCTCTGATCATTGTCTCTGCGCTAGCTCACAGTCTGGAAGCTTGGAGAGCCTCTTTTGTTTCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000440363.1
CDS CAA 72 bp	AGTTACTGTTCACTGAGCATTCGGCCTTCACTGTACTaGTCAGTGGGGGATATAGGAAAAGTGCATGTAGAC	+
Preference number: 6 (lower is better) Translates to: SYCSLSIRPSLY*SVGDIGKVHVD Trigger: GTCTACATGCACTTTTCCTATATCCCCCACTGACAAGTACAGTGAAGGCCGAATGCTCAGTGAACAGTAACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000440363.1 ENST00000441910.5
CDS TCA 72 bp	TGTGTCTTTGGGTTTCATGACTACTATCACATGAGGTaGGATTTCATTTGTGTTCTCTTTTTCTCAGTGCTC	+
Preference number: 6 (lower is better) Translates to: CVFGFHDYYHMR*DFICVLFFSVL Trigger: GAGCACTGAGAAAAAGAGAACACAAATGAAATCTCACCTCATGTGATAGTAGTCATGAAACCCAAAGACACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000440363.1 ENST00000441910.5

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