Pregenerated sensors for DNAJC8 (Homo sapiens)
Ensembl gene IDs: ENSG00000126698Ensembl transcript IDs: ENST00000263697.6, ENST00000470967.1, ENST00000482674.5, ENST00000488868.1, ENST00000603289.5, ENST00000644234.1, ENST00000645475.1, ENST00000645856.2, ENST00000645998.1, ENST00000647003.1
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | GAAGAAACTAAGGTTCAGCCAGGTCTGTCCAACCCCAAAGCATTTTaGGGTTCAGCCAAGCCAGACAAGGGACCCACAAGGGAGAGTACA | + |
Preference number: 1 (lower is better) Translates to: EETKVQPGLSNPKAF*GSAKPDKGPTREST Trigger: TGTACTCTCCCTTGTGGGTCCCTTGTCTGGCTTGGCTGAACCCCAAAATGCTTTGGGGTTGGACAGACCTGGCTGAACCTTAGTTTCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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3UTR GCA 90 bp | CCAAGGAGCACTATGGTAGTTACCTTGTATATGCCATGGCAAATCTaGCCTAAAAGCTGCTGCAGTAATTCATATTCCCATTTCATAGAT | + |
Preference number: 1 (lower is better) Translates to: PRSTMVVTLYMPWQI*PKSCCSNSYSHFID Trigger: ATCTATGAAATGGGAATATGAATTACTGCAGCAGCTTTTAGGGCAGATTTGCCATGGCATATACAAGGTAACTACCATAGTGCTCCTTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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3UTR-3UTR CCA 90 bp | AGCACTATGGTAGTTACCTTGTATATGCCATGGCAAATCTGCCCTAAAAGCTGCAACCCCAAAGCATTTTaGGGTTCAGCCAAGCCAGAC | + |
Preference number: 2 (lower is better) Translates to: STMVVTLYMPWQICPKSCNPKAF*GSAKPD Trigger: GTCTGGCTTGGCTGAACCCCAAAATGCTTTGGGGTT...GCAGCTTTTAGGGCAGATTTGCCATGGCATATACAAGGTAACTACCATAGTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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3UTR CAA 90 bp | ATAATAGGATATTGGCAATACCCAAGGAGCACTATGGTAGTTACCTaGTATATGCCATGGCAAATCTGCCCTAAAAGCTGCTGCAGTAAT | + |
Preference number: 2 (lower is better) Translates to: IIGYWQYPRSTMVVT*YMPWQICPKSCCSN Trigger: ATTACTGCAGCAGCTTTTAGGGCAGATTTGCCATGGCATATACAAGGTAACTACCATAGTGCTCCTTGGGTATTGCCAATATCCTATTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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3UTR CCA 72 bp | AAGGTTCAGCCAGGTCTGTCCAACCCCAAAGCATTTTaGGGTTCAGCCAAGCCAGACAAGGGACCCACAAGG | + |
Preference number: 3 (lower is better) Translates to: KVQPGLSNPKAF*GSAKPDKGPTR Trigger: CCTTGTGGGTCCCTTGTCTGGCTTGGCTGAACCCCAAAATGCTTTGGGGTTGGACAGACCTGGCTGAACCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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3UTR CCA 72 bp | CCAAGGAGCACTATGGTAGTTACCTTGTATATGCCATaGCAAATCTGCCCTAAAAGCTGCTGCAGTAATTCA | + |
Preference number: 3 (lower is better) Translates to: PRSTMVVTLYMP*QICPKSCCSNS Trigger: TGAATTACTGCAGCAGCTTTTAGGGCAGATTTGCCATGGCATATACAAGGTAACTACCATAGTGCTCCTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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3UTR GCA 72 bp | ACTATGGTAGTTACCTTGTATATGCCATGGCAAATCTaGCCTAAAAGCTGCTGCAGTAATTCATATTCCCAT | + |
Preference number: 3 (lower is better) Translates to: TMVVTLYMPWQI*PKSCCSNSYSH Trigger: ATGGGAATATGAATTACTGCAGCAGCTTTTAGGGCAGATTTGCCATGGCATATACAAGGTAACTACCATAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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3UTR GCA 72 bp | ACCTTGTATATGCCATGGCAAATCTGCCCTAAAAGCTaGTGCAGTAATTCATATTCCCATTTCATAGATGAA | + |
Preference number: 3 (lower is better) Translates to: TLYMPWQICPKS*CSNSYSHFIDE Trigger: TTCATCTATGAAATGGGAATATGAATTACTGCAGCAGCTTTTAGGGCAGATTTGCCATGGCATATACAAGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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CDS-3UTR GCA 90 bp | GGGTTCAGCCAAGCCAGACAAGGGACCCACAAGGGAGAGTACAAGGAAAAGTACATGCTTCCTCGGTGCTaGCTCCGCCGCCTGAAGTCC | + |
Preference number: 4 (lower is better) Translates to: GFSQARQGTHKGEYKEKYMLPRC*LRRLKS Trigger: GGACTTCAGGCGGCGGAGGCAGCACCGAGGAAGCAT...GTACTTTTCCTTGTACTCTCCCTTGTGGGTCCCTTGTCTGGCTTGGCTGAACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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CDS-3UTR GCA 90 bp | CCCTGCGCTCTCTTCCTCCTGCTCCGGCCATGTAAGACGTGCCTCCTTCCTCTTCGGCCATGTAAGACGTaGCTCCTTCCTCTTCACCTT | + |
Preference number: 4 (lower is better) Translates to: PCALFLLLRPCKTCLLPLRPCKT*LLPLHL Trigger: AAGGTGAAGAGGAAGGAGGCACGTCTTACATGGCCG...AAGAGGAAGGAGGCACGTCTTACATGGCCGGAGCAGGAGGAAGAGAGCGCAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000603289.5 ENST00000647003.1 |
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CDS-3UTR TCA 90 bp | CCTTCTGCCACAACTGTTAAGTTTCCTGAGGCCTCCCCAGCCATGCTTCCTGTAGCCCCTCCTGAGGGCTaGTTCTGTCCGTTGCTCCAT | + |
Preference number: 4 (lower is better) Translates to: PSATTVKFPEASPAMLPVAPPEG*FCPLLH Trigger: ATGGAGCAACGGACAGAATCAGCCCTCAGGAGGGGC...TACAGGAAGCATGGCTGGGGAGGCCTCAGGAAACTTAACAGTTGTGGCAGAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000603289.5 ENST00000647003.1 |
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CDS-3UTR GCA 90 bp | GGTTCAGCCAAGCCAGACAAGGGACCCACAAGGGAGAGTACAAGGAAAAGTACAATGCTTCCTCGGTGCTaGCTCCGCCGCCTGAAGTCC | + |
Preference number: 4 (lower is better) Translates to: GSAKPDKGPTRESTRKSTMLPRC*LRRLKS Trigger: GGACTTCAGGCGGCGGAGGCAGCACCGAGGAAGCAT...TGTACTTTTCCTTGTACTCTCCCTTGTGGGTCCCTTGTCTGGCTTGGCTGAACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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CDS-3UTR GCA 90 bp | CCTCTTCACCTTCTGCCACAACTGTTAAGTTTCCTGAGGCCTCCCCAGCCATGCGCGCTCTCTTCCTCCTaGTCCGGCCATGTAAGACGT | + |
Preference number: 4 (lower is better) Translates to: PLHLLPQLLSFLRPPQPCALSSS*SGHVRR Trigger: ACGTCTTACATGGCCGGAGCAGGAGGAAGAGAGCGC...GCATGGCTGGGGAGGCCTCAGGAAACTTAACAGTTGTGGCAGAAGGTGAAGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000603289.5 ENST00000647003.1 |
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CDS-3UTR TCA 90 bp | AAGACGTGCCTCCTTCCTCTTCACCTTCTGCCACAACTGTTAAGTTTCCTGAGGGCCCCTCCTGAGGGCTaGTTCTGTCCGTTGCTCCAT | + |
Preference number: 4 (lower is better) Translates to: KTCLLPLHLLPQLLSFLRAPPEG*FCPLLH Trigger: ATGGAGCAACGGACAGAATCAGCCCTCAGGAGGGGC...CCTCAGGAAACTTAACAGTTGTGGCAGAAGGTGAAGAGGAAGGAGGCACGTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000603289.5 ENST00000647003.1 |
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CDS-3UTR GCA 90 bp | GTTAAGTTTCCTGAGGCCTCCCCAGCCATGCTTCCTGTAAAGCCTAGTTTCCTGGCGCTCTCTTCCTCCTaGTCCGGCCATGTAAGACGT | + |
Preference number: 4 (lower is better) Translates to: VKFPEASPAMLPVKPSFLALSSS*SGHVRR Trigger: ACGTCTTACATGGCCGGAGCAGGAGGAAGAGAGCGC...CAGGAAACTAGGCTTTACAGGAAGCATGGCTGGGGAGGCCTCAGGAAACTTAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000603289.5 ENST00000647003.1 |
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CDS-3UTR GCA 90 bp | CCTTCTGCCACAACTGTTAAGTTTCCTGAGGCCTCCCCAGCCATGCTTCCTGTACGGCCATGTAAGACGTaGCTCCTTCCTCTTCACCTT | + |
Preference number: 4 (lower is better) Translates to: PSATTVKFPEASPAMLPVRPCKT*LLPLHL Trigger: AAGGTGAAGAGGAAGGAGGCACGTCTTACATGGCCG...TACAGGAAGCATGGCTGGGGAGGCCTCAGGAAACTTAACAGTTGTGGCAGAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000603289.5 ENST00000647003.1 |
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CDS-3UTR CCA 90 bp | GGGTTCAGCCAAGCCAGACAAGGGACCCACAAGGGAGAGTACAAGGAAAAGTACAACCCCAAAGCATTTTaGGGTTCAGCCAAGCCAGAC | + |
Preference number: 4 (lower is better) Translates to: GFSQARQGTHKGEYKEKYNPKAF*GSAKPD Trigger: GTCTGGCTTGGCTGAACCCCAAAATGCTTTGGGGTT...GTACTTTTCCTTGTACTCTCCCTTGTGGGTCCCTTGTCTGGCTTGGCTGAACCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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CDS-3UTR GCA 90 bp | GGGTTCAGCCAAGCCAGACAAGGGACCCACAAGGGAGAGTACAAGGAAAAGTACATGCCATGGCAAATCTaGCCTAAAAGCTGCTGCAGT | + |
Preference number: 4 (lower is better) Translates to: GFSQARQGTHKGEYKEKYMPWQI*PKSCCS Trigger: ACTGCAGCAGCTTTTAGGGCAGATTTGCCATGGCAT...GTACTTTTCCTTGTACTCTCCCTTGTGGGTCCCTTGTCTGGCTTGGCTGAACCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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CDS-3UTR CCA 90 bp | GGTTCAGCCAAGCCAGACAAGGGACCCACAAGGGAGAGTACAAGGAAAAGTACAAACCCCAAAGCATTTTaGGGTTCAGCCAAGCCAGAC | + |
Preference number: 4 (lower is better) Translates to: GSAKPDKGPTRESTRKSTNPKAF*GSAKPD Trigger: GTCTGGCTTGGCTGAACCCCAAAATGCTTTGGGGTT...TGTACTTTTCCTTGTACTCTCCCTTGTGGGTCCCTTGTCTGGCTTGGCTGAACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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CDS-3UTR GCA 90 bp | TCACCTTCTGCCACAACTGTTAAGTTTCCTGAGGCCTCCCCAGCCATGCTTCCTGCTGATTCTGTCCGTTaGTCCATTTTTACTTTCGGT | + |
Preference number: 4 (lower is better) Translates to: SPSATTVKFPEASPAMLPADSVR*SIFTFG Trigger: ACCGAAAGTAAAAATGGAGCAACGGACAGAATCAGC...AGGAAGCATGGCTGGGGAGGCCTCAGGAAACTTAACAGTTGTGGCAGAAGGTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000603289.5 ENST00000647003.1 |
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CDS-3UTR GCA 90 bp | GCCACAACTGTTAAGTTTCCTGAGGCCTCCCCAGCCATGCTTCCTGTAAAGCCTGCTGATTCTGTCCGTTaGTCCATTTTTACTTTCGGT | + |
Preference number: 4 (lower is better) Translates to: ATTVKFPEASPAMLPVKPADSVR*SIFTFG Trigger: ACCGAAAGTAAAAATGGAGCAACGGACAGAATCAGC...AGGCTTTACAGGAAGCATGGCTGGGGAGGCCTCAGGAAACTTAACAGTTGTGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000603289.5 ENST00000647003.1 |
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CDS-3UTR GCA 90 bp | TGGGGTTCAGCCAAGCCAGACAAGGGACCCACAAGGGAGAGTACAAGGAAAAGTTGCCCTAAAAGCTGCTaGAGTAATTCATATTCCCAT | + |
Preference number: 4 (lower is better) Translates to: WGSAKPDKGPTRESTRKSCPKSC*SNSYSH Trigger: ATGGGAATATGAATTACTGCAGCAGCTTTTAGGGCA...ACTTTTCCTTGTACTCTCCCTTGTGGGTCCCTTGTCTGGCTTGGCTGAACCCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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CDS-3UTR GCA 90 bp | GGTTCAGCCAAGCCAGACAAGGGACCCACAAGGGAGAGTACAAGGAAAAGTACATGCCCTAAAAGCTGCTaGAGTAATTCATATTCCCAT | + |
Preference number: 4 (lower is better) Translates to: GSAKPDKGPTRESTRKSTCPKSC*SNSYSH Trigger: ATGGGAATATGAATTACTGCAGCAGCTTTTAGGGCA...TGTACTTTTCCTTGTACTCTCCCTTGTGGGTCCCTTGTCTGGCTTGGCTGAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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CDS-3UTR GCA 90 bp | GGTTCAGCCAAGCCAGACAAGGGACCCACAAGGGAGAGTACAAGGAAAAGTACAATCTGCCCTAAAAGCTaGTGCAGTAATTCATATTCC | + |
Preference number: 4 (lower is better) Translates to: GSAKPDKGPTRESTRKSTICPKS*CSNSYS Trigger: GGAATATGAATTACTGCAGCAGCTTTTAGGGCAGAT...TGTACTTTTCCTTGTACTCTCCCTTGTGGGTCCCTTGTCTGGCTTGGCTGAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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CDS-3UTR CCA 90 bp | CAGACAAGGGACCCACAAGGGAGAGTACAAGGAAAAGTACATCAATGGCTTGGGACCTTGTATATGCCATaGCAAATCTGCCCTAAAAGC | + |
Preference number: 4 (lower is better) Translates to: QTRDPQGRVQGKVHQWLGTLYMP*QICPKS Trigger: GCTTTTAGGGCAGATTTGCCATGGCATATACAAGGT...CCCAAGCCATTGATGTACTTTTCCTTGTACTCTCCCTTGTGGGTCCCTTGTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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3UTR CAA 72 bp | TATTGGCAATACCCAAGGAGCACTATGGTAGTTACCTaGTATATGCCATGGCAAATCTGCCCTAAAAGCTGC | + |
Preference number: 4 (lower is better) Translates to: YWQYPRSTMVVT*YMPWQICPKSC Trigger: GCAGCTTTTAGGGCAGATTTGCCATGGCATATACAAGGTAACTACCATAGTGCTCCTTGGGTATTGCCAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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CDS-3UTR CCA 90 bp | TTACCTTGTATATGCCATGGCAAATCTGCCCTAAAAGCTGCTGCAGTAATTCATACCTTGTATATGCCATaGCAAATCTGCCCTAAAAGC | + |
Preference number: 4 (lower is better) Translates to: LPCICHGKSALKAAAVIHTLYMP*QICPKS Trigger: GCTTTTAGGGCAGATTTGCCATGGCATATACAAGGT...ATGAATTACTGCAGCAGCTTTTAGGGCAGATTTGCCATGGCATATACAAGGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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CDS-3UTR CAA 90 bp | GGGTTCAGCCAAGCCAGACAAGGGACCCACAAGGGAGAGTACAAGGAAAAGTACCAACCCCAAAGCATTTaGGGGTTCAGCCAAGCCAGA | + |
Preference number: 5 (lower is better) Translates to: GFSQARQGTHKGEYKEKYQPQSI*GFSQAR Trigger: TCTGGCTTGGCTGAACCCCAAAATGCTTTGGGGTTG...GTACTTTTCCTTGTACTCTCCCTTGTGGGTCCCTTGTCTGGCTTGGCTGAACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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CDS-3UTR CAA 90 bp | AGCACTATGGTAGTTACCTTGTATATGCCATGGCAAATCTGCCCTAAAAGCTGCCAACCCCAAAGCATTTaGGGGTTCAGCCAAGCCAGA | + |
Preference number: 5 (lower is better) Translates to: STMVVTLYMPWQICPKSCQPQSI*GFSQAR Trigger: TCTGGCTTGGCTGAACCCCAAAATGCTTTGGGGTTG...GCAGCTTTTAGGGCAGATTTGCCATGGCATATACAAGGTAACTACCATAGTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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CDS-3UTR CAA 90 bp | TGGGGTTCAGCCAAGCCAGACAAGGGACCCACAAGGGAGAGTACAAGGAAAAGTACTATGGTAGTTACCTaGTATATGCCATGGCAAATC | + |
Preference number: 5 (lower is better) Translates to: WGSAKPDKGPTRESTRKSTMVVT*YMPWQI Trigger: GATTTGCCATGGCATATACAAGGTAACTACCATAGT...ACTTTTCCTTGTACTCTCCCTTGTGGGTCCCTTGTCTGGCTTGGCTGAACCCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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CDS-3UTR CAA 90 bp | GGTTCAGCCAAGCCAGACAAGGGACCCACAAGGGAGAGTACAAGGAAAAGTACAAGAAATAATAGGATATaGGCAATACCCAAGGAGCAC | + |
Preference number: 5 (lower is better) Translates to: GSAKPDKGPTRESTRKSTRNNRI*AIPKEH Trigger: GTGCTCCTTGGGTATTGCCAATATCCTATTATTTCT...TGTACTTTTCCTTGTACTCTCCCTTGTGGGTCCCTTGTCTGGCTTGGCTGAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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CDS TCA 90 bp | GACCAACGGGAGGTTGTCCCCAACTCATCAGATCCAAAAAGTCTTTaGAACAGACTACTTATTTACCTTTCTTGGCTTGTGGTTATGTGT | + |
Preference number: 5 (lower is better) Translates to: DQREVVPNSSDPKSL*NRLLIYLSWLVVMC Trigger: ACACATAACCACAAGCCAAGAAAGGTAAATAAGTAGTCTGTTTCAAAGACTTTTTGGATCTGATGAGTTGGGGACAACCTCCCGTTGGTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000470967.1 ENST00000645998.1 |
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CDS-3UTR CAA 90 bp | AGCACTATGGTAGTTACCTTGTATATGCCATGGCAAATCTGCCCTAAAAGCTGCAGAAATAATAGGATATaGGCAATACCCAAGGAGCAC | + |
Preference number: 5 (lower is better) Translates to: STMVVTLYMPWQICPKSCRNNRI*AIPKEH Trigger: GTGCTCCTTGGGTATTGCCAATATCCTATTATTTCT...GCAGCTTTTAGGGCAGATTTGCCATGGCATATACAAGGTAACTACCATAGTGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000263697.6 ENST00000645856.2 |
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CDS TCA 90 bp | CAAAGCAAAGTTAAGGTCTACTTCTTAAACAACAACATTCTGCTTTaGAATGGCAACTGCTCTACTGAAAACCACAGCTTCTTGGTGACC | + |
Preference number: 5 (lower is better) Translates to: QSKVKVYFLNNNILL*NGNCSTENHSFLVT Trigger: GGTCACCAAGAAGCTGTGGTTTTCAGTAGAGCAGTTGCCATTTCAAAGCAGAATGTTGTTGTTTAAGAAGTAGACCTTAACTTTGCTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000482674.5 ENST00000488868.1 ENST00000644234.1 ENST00000645475.1 |
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CDS CAA 90 bp | GGACCAACGGGAGGTTGTCCCCAACTCATCAGATCCAAAAAGTCTTaGAAACAGACTACTTATTTACCTTTCTTGGCTTGTGGTTATGTG | + |
Preference number: 6 (lower is better) Translates to: GPTGGCPQLIRSKKS*KQTTYLPFLACGYV Trigger: CACATAACCACAAGCCAAGAAAGGTAAATAAGTAGTCTGTTTCAAAGACTTTTTGGATCTGATGAGTTGGGGACAACCTCCCGTTGGTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000470967.1 ENST00000645998.1 |
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CDS GCA 72 bp | TCTTTGCTTGATCTAGGACAAGGAACAGTTAGGCCCTaGCATTCACAATCTAATACTCAGAAGCAGGTAAAT | + |
Preference number: 6 (lower is better) Translates to: SLLDLGQGTVRP*HSQSNTQKQVN Trigger: ATTTACCTGCTTCTGAGTATTAGATTGTGAATGGCAGGGCCTAACTGTTCCTTGTCCTAGATCAAGCAAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000482674.5 ENST00000488868.1 ENST00000644234.1 ENST00000645475.1 |
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CDS TCA 72 bp | GTTAAGGTCTACTTCTTAAACAACAACATTCTGCTTTaGAATGGCAACTGCTCTACTGAAAACCACAGCTTC | + |
Preference number: 6 (lower is better) Translates to: VKVYFLNNNILL*NGNCSTENHSF Trigger: GAAGCTGTGGTTTTCAGTAGAGCAGTTGCCATTTCAAAGCAGAATGTTGTTGTTTAAGAAGTAGACCTTAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000482674.5 ENST00000488868.1 ENST00000644234.1 ENST00000645475.1 |