RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DDX19B (Homo sapiens)

Ensembl gene IDs: ENSG00000157349

Ensembl transcript IDs: ENST00000288071.11, ENST00000355992.7, ENST00000393657.6, ENST00000451014.7, ENST00000562519.5, ENST00000562912.5, ENST00000563206.5, ENST00000563392.5, ENST00000568008.5, ENST00000568408.5, ENST00000568460.5, ENST00000568625.5, ENST00000569099.6, ENST00000570055.5

Found 263 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGGAGGCTGCCCCATCCACTCCAAGCCAGAGAACAAGCAGAGGCTaGCACAGGAGATCCTGGGCAAGTAATCAGCCACAGCATCTAGAT +
Preference number: 1 (lower is better)
Translates to: LEAAPSTPSQRTSRG*HRRSWASNQPQHLD
Trigger: ATCTAGATGCTGTGGCTGATTACTTGCCCAGGATCTCCTGTGGCAGCCTCTGCTTGTTCTCTGGCTTGGAGTGGATGGGGCAGCCTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288071.11
ENST00000562519.5
3UTR TCA 90 bp CAGCAGCTCTCAGGCCTCCTCTGCTGCCTCATGCCATTCCAAACATaGTGGCTGGGCTTACACACCTATCTTACTGGAAGCCTCCCTCTC +
Preference number: 1 (lower is better)
Translates to: QQLSGLLCCLMPFQT*WLGLHTYLTGSLPL
Trigger: GAGAGGGAGGCTTCCAGTAAGATAGGTGTGTAAGCCCAGCCATCATGTTTGGAATGGCATGAGGCAGCAGAGGAGGCCTGAGAGCTGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CCA 90 bp CTCTGTGTTCCCTTTCCACCACTATTCCATTACTTCCACAGGAGCTaGAGGCTGCCCCATCCACTCCAAGCCAGAGAACAAGCAGAGGCT +
Preference number: 1 (lower is better)
Translates to: LCVPFPPLFHYFHRS*RLPHPLQAREQAEA
Trigger: AGCCTCTGCTTGTTCTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGTAATGGAATAGTGGTGGAAAGGGAACACAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CCA 90 bp TCTCAGGCCTCCTCTGCTGCCTCATGCCATTCCAAACATGATGGCTaGGCTTACACACCTATCTTACTGGAAGCCTCCCTCTCTGTGTTC +
Preference number: 1 (lower is better)
Translates to: SQASSAASCHSKHDG*AYTPILLEASLSVF
Trigger: GAACACAGAGAGGGAGGCTTCCAGTAAGATAGGTGTGTAAGCCCAGCCATCATGTTTGGAATGGCATGAGGCAGCAGAGGAGGCCTGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR TCA 90 bp GCACTCTACACAGACTGCACCCACCGAGAACAGGTCACAGTCCTGTaGCACAAACCCATATACACAACCGAGAGGTTGGCATTTTGGTCC +
Preference number: 1 (lower is better)
Translates to: ALYTDCTHREQVTVL*HKPIYTTERLAFWS
Trigger: GGACCAAAATGCCAACCTCTCGGTTGTGTATATGGGTTTGTGTCACAGGACTGTGACCTGTTCTCGGTGGGTGCAGTCTGTGTAGAGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR GCA 90 bp AGGACTTGCTTAAGCACAGGCACAGGACCCACCAATAATCAGATGTaGACTCTACACAGACTGCACCCACCGAGAACAGGTCACAGTCCT +
Preference number: 1 (lower is better)
Translates to: RTCLSTGTGPTNNQM*TLHRLHPPRTGHSP
Trigger: AGGACTGTGACCTGTTCTCGGTGGGTGCAGTCTGTGTAGAGTGCACATCTGATTATTGGTGGGTCCTGTGCCTGTGCTTAAGCAAGTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CCA 90 bp TTATTTAACAAATTCCCTTCTGCTGTGGGCACTAGGACAGGGGGCTaGCAATACTCAGATGAGCTGTCCCACCCCCAAGTCCAAAGCAGC +
Preference number: 1 (lower is better)
Translates to: LFNKFPSAVGTRTGG*QYSDELSHPQVQSS
Trigger: GCTGCTTTGGACTTGGGGGTGGGACAGCTCATCTGAGTATTGCCAGCCCCCTGTCCTAGTGCCCACAGCAGAAGGGAATTTGTTAAATAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR TCA 90 bp CAGCCTTGGCCAGGTGTGAGAAGTGTCCATTACTATTGTTTGCTCTaGCTATCTTGCGCAAAGATGCCAAGTAAGGCTGGAGCAAAGGCC +
Preference number: 1 (lower is better)
Translates to: QPWPGVRSVHYYCLL*LSCAKMPSKAGAKA
Trigger: GGCCTTTGCTCCAGCCTTACTTGGCATCTTTGCGCAAGATAGTCAGAGCAAACAATAGTAATGGACACTTCTCACACCTGGCCAAGGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CCA 90 bp GTTGGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTaGGCACTAGGACAGGGGGCTGGCAATACTCAGATGAGCTGTCCC +
Preference number: 1 (lower is better)
Translates to: VGILVHAYLTNSLLL*ALGQGAGNTQMSCP
Trigger: GGGACAGCTCATCTGAGTATTGCCAGCCCCCTGTCCTAGTGCCCACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CCA 90 bp CATGCCATTCCAAACATGATGGCTGGGCTTACACACCTATCTTACTaGAAGCCTCCCTCTCTGTGTTCCCTTTCCACCACTATTCCATTA +
Preference number: 1 (lower is better)
Translates to: HAIPNMMAGLTHLSY*KPPSLCSLSTTIPL
Trigger: TAATGGAATAGTGGTGGAAAGGGAACACAGAGAGGGAGGCTTCCAGTAAGATAGGTGTGTAAGCCCAGCCATCATGTTTGGAATGGCATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR TCA 90 bp CTGACAAAACTTGCCTTCTGGGTGTGGAGACAAAACAAGAATTTGTaGCTACTGCTGATCACATCTAGAACTGCCTTGAGGCTGGCCATG +
Preference number: 1 (lower is better)
Translates to: LTKLAFWVWRQNKNL*LLLITSRTALRLAM
Trigger: CATGGCCAGCCTCAAGGCAGTTCTAGATGTGATCAGCAGTAGTCACAAATTCTTGTTTTGTCTCCACACCCAGAAGGCAAGTTTTGTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR TCA 90 bp TATCTTGCGCAAAGATGCCAAGTAAGGCTGGAGCAAAGGCCTTGGTaGTACTCTTGCCTTGGACAGATAAATGGTGGTAGTGTAGCTAGT +
Preference number: 1 (lower is better)
Translates to: YLAQRCQVRLEQRPW*YSCLGQINGGSVAS
Trigger: ACTAGCTACACTACCACCATTTATCTGTCCAAGGCAAGAGTATCACCAAGGCCTTTGCTCCAGCCTTACTTGGCATCTTTGCGCAAGATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR TCA 90 bp CATCTTTGCTGTCATTTCGTGGGTACCAACAGCCTTGGCCAGGTGTaGGAAGTGTCCATTACTATTGTTTGCTCTGACTATCTTGCGCAA +
Preference number: 1 (lower is better)
Translates to: HLCCHFVGTNSLGQV*EVSITIVCSDYLAQ
Trigger: TTGCGCAAGATAGTCAGAGCAAACAATAGTAATGGACACTTCTCACACCTGGCCAAGGCTGTTGGTACCCACGAAATGACAGCAAAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR GCA 90 bp GACACAAACCCATATACACAACCGAGAGGTTGGCATTTTGGTCCATaGTTATTTAACAAATTCCCTTCTGCTGTGGGCACTAGGACAGGG +
Preference number: 1 (lower is better)
Translates to: DTNPYTQPRGWHFGP*LFNKFPSAVGTRTG
Trigger: CCCTGTCCTAGTGCCCACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCTCGGTTGTGTATATGGGTTTGTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR GCA 90 bp CCAGGTCCTAGAGAAAGTGGCCACTCTATACCAAAGCCAAAGAACTaGAGAGTACTCCTCTTGGTTGGGGTTTCATATTGCTCTTGCAAT +
Preference number: 1 (lower is better)
Translates to: PGPRESGHSIPKPKN*RVLLLVGVSYCSCN
Trigger: ATTGCAAGAGCAATATGAAACCCCAACCAAGAGGAGTACTCTGCAGTTCTTTGGCTTTGGTATAGAGTGGCCACTTTCTCTAGGACCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CCA 90 bp GTGGCCACTCTATACCAAAGCCAAAGAACTGCAGAGTACTCCTCTTaGTTGGGGTTTCATATTGCTCTTGCAATTCAGTTTCCTCTCATC +
Preference number: 1 (lower is better)
Translates to: VATLYQSQRTAEYSS*LGFHIALAIQFPLI
Trigger: GATGAGAGGAAACTGAATTGCAAGAGCAATATGAAACCCCAACCAAGAGGAGTACTCTGCAGTTCTTTGGCTTTGGTATAGAGTGGCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CCA 90 bp AGGTCACAGTCCTGTGACACAAACCCATATACACAACCGAGAGGTTaGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTG +
Preference number: 1 (lower is better)
Translates to: RSQSCDTNPYTQPRG*HFGPCLFNKFPSAV
Trigger: CACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCTCGGTTGTGTATATGGGTTTGTGTCACAGGACTGTGACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CCA 90 bp CCACTCTATACCAAAGCCAAAGAACTGCAGAGTACTCCTCTTGGTTaGGGTTTCATATTGCTCTTGCAATTCAGTTTCCTCTCATCTTTG +
Preference number: 1 (lower is better)
Translates to: PLYTKAKELQSTPLG*GFILLLQFSFLSSL
Trigger: CAAAGATGAGAGGAAACTGAATTGCAAGAGCAATATGAAACCCCAACCAAGAGGAGTACTCTGCAGTTCTTTGGCTTTGGTATAGAGTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR GCA 90 bp GCACTAGGACAGGGGGCTGGCAATACTCAGATGAGCTGTCCCACCCCCAAGTCCTCAGGCCTCCTCTGCTaGCTCATGCCATTCCAAACA +
Preference number: 2 (lower is better)
Translates to: ALGQGAGNTQMSCPTPKSSGLLC*LMPFQT
Trigger: TGTTTGGAATGGCATGAGGCAGCAGAGGAGGCCTGA...GGACTTGGGGGTGGGACAGCTCATCTGAGTATTGCCAGCCCCCTGTCCTAGTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CCA 90 bp ACTAGGACAGGGGGCTGGCAATACTCAGATGAGCTGTCCCACCCCCAAGTCCAATACTTCCACAGGAGCTaGAGGCTGCCCCATCCACTC +
Preference number: 2 (lower is better)
Translates to: TRTGGWQYSDELSHPQVQYFHRS*RLPHPL
Trigger: GAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGTA...TTGGACTTGGGGGTGGGACAGCTCATCTGAGTATTGCCAGCCCCCTGTCCTAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CCA 90 bp CCAAGCCAGAGAACAAGCAGAGGCTGCCACAGGAGATCCTGGGCAAGTAATCAGTACTTCCACAGGAGCTaGAGGCTGCCCCATCCACTC +
Preference number: 2 (lower is better)
Translates to: PSQRTSRGCHRRSWASNQYFHRS*RLPHPL
Trigger: GAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGTA...CTGATTACTTGCCCAGGATCTCCTGTGGCAGCCTCTGCTTGTTCTCTGGCTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288071.11
ENST00000562519.5
3UTR-3UTR CCA 90 bp ACTTCCACAGGAGCTGGAGGCTGCCCCATCCACTCCAAGCCAGAGAACAAGCAGTTTGCAGGTTCTACTTaGCTAAGCATGGCCAGCACG +
Preference number: 2 (lower is better)
Translates to: TSTGAGGCPIHSKPENKQFAGST*LSMAST
Trigger: CGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAA...CTGCTTGTTCTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000562519.5
3UTR-3UTR CCA 90 bp TATTCCATTACTTCCACAGGAGCTGGAGGCTGCCCCATCCACTCCAAGCCAGAGTGCCACAGGAGATCCTaGGCAAGTAATCAGCCACAG +
Preference number: 2 (lower is better)
Translates to: YSITSTGAGGCPIHSKPECHRRS*ASNQPQ
Trigger: CTGTGGCTGATTACTTGCCCAGGATCTCCTGTGGCA...CTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGTAATGGAATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CCA 90 bp CCAAGCCAGAGAACAAGCAGAGGCTGCCACAGGAGATCCTGGGCAAGTAATCAGTGCCACAGGAGATCCTaGGCAAGTAATCAGCCACAG +
Preference number: 2 (lower is better)
Translates to: PSQRTSRGCHRRSWASNQCHRRS*ASNQPQ
Trigger: CTGTGGCTGATTACTTGCCCAGGATCTCCTGTGGCA...CTGATTACTTGCCCAGGATCTCCTGTGGCAGCCTCTGCTTGTTCTCTGGCTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288071.11
ENST00000562519.5
3UTR-3UTR TCA 90 bp GTGGCCACTCTATACCAAAGCCAAAGAACTGCAGAGTACTCCTCTTGGTTGGGGCTGGCAATACTCAGATaGGCTGTCCCACCCCCAAGT +
Preference number: 2 (lower is better)
Translates to: VATLYQSQRTAEYSSWLGLAILR*AVPPPS
Trigger: ACTTGGGGGTGGGACAGCTCATCTGAGTATTGCCAG...CCCCAACCAAGAGGAGTACTCTGCAGTTCTTTGGCTTTGGTATAGAGTGGCCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CCA 90 bp CCCAGGAGGCAGATCTGGCCTAAATACGGAGATGCGTACAAAGAAGACCTAGGAAATTCCCTTCTGCTGTaGGCACTAGGACAGGGGGCT +
Preference number: 2 (lower is better)
Translates to: PRRQIWPKYGDAYKEDLGNSLLL*ALGQGA
Trigger: AGCCCCCTGTCCTAGTGCCCACAGCAGAAGGGAATT...TCCTAGGTCTTCTTTGTACGCATCTCCGTATTTAGGCCAGATCTGCCTCCTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR TCA 90 bp ACTTCCACAGGAGCTGGAGGCTGCCCCATCCACTCCAAGCCAGAGAACAAGCAGGCATCTAGATTAGCATaGAGGAAACACTGGCCAAAT +
Preference number: 2 (lower is better)
Translates to: TSTGAGGCPIHSKPENKQASRLA*RKHWPN
Trigger: ATTTGGCCAGTGTTTCCTTCATGCTAATCTAGATGC...CTGCTTGTTCTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288071.11
ENST00000562519.5
3UTR-3UTR CCA 90 bp GGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGCTCCTTGGAGAAGCTGTaGTTTCAGCCGAAGCTCTTC +
Preference number: 2 (lower is better)
Translates to: GVFVCRFYLAKHGQHEGSSLEKL*FQPKLF
Trigger: GAAGAGCTTCGGCTGAAACCACAGCTTCTCCAAGGA...GCTGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000568460.5
3UTR-3UTR GCA 90 bp CCAAGCCAGAGAACAAGCAGAGGCTGCCACAGGAGATCCTGGGCAAGTAATCAGCTGGGGGTATTTGTTTaGAGGTTCTACTTGGCTAAG +
Preference number: 2 (lower is better)
Translates to: PSQRTSRGCHRRSWASNQLGVFV*RFYLAK
Trigger: CTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAG...CTGATTACTTGCCCAGGATCTCCTGTGGCAGCCTCTGCTTGTTCTCTGGCTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000562519.5
3UTR-3UTR CCA 90 bp CCAAGCCAGAGAACAAGCAGAGGCTGCCACAGGAGATCCTGGGCAAGTAATCAGACACAACCGAGAGGTTaGCATTTTGGTCCATGCTTA +
Preference number: 2 (lower is better)
Translates to: PSQRTSRGCHRRSWASNQTQPRG*HFGPCL
Trigger: TAAGCATGGACCAAAATGCCAACCTCTCGGTTGTGT...CTGATTACTTGCCCAGGATCTCCTGTGGCAGCCTCTGCTTGTTCTCTGGCTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR TCA 90 bp TTCCTCTCATCTTTGCTGTCATTTCGTGGGTACCAACAGCCTTGGCCAGGTGTGATTATTCCCCAGCTCTaGCAAAACTTGCCTTCTGGG +
Preference number: 2 (lower is better)
Translates to: FLSSLLSFRGYQQPWPGVIIPQL*QNLPSG
Trigger: CCCAGAAGGCAAGTTTTGTCAGAGCTGGGGAATAAT...CACACCTGGCCAAGGCTGTTGGTACCCACGAAATGACAGCAAAGATGAGAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR GCA 90 bp ACTTCCACAGGAGCTGGAGGCTGCCCCATCCACTCCAAGCCAGAGAACAAGCAGATCTCTGTGTATTCATaGCTAATCTTCCAAGGTTGT +
Preference number: 2 (lower is better)
Translates to: TSTGAGGCPIHSKPENKQISVYS*LIFQGC
Trigger: ACAACCTTGGAAGATTAGGCATGAATACACAGAGAT...CTGCTTGTTCTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288071.11
ENST00000562519.5
3UTR-3UTR GCA 90 bp CCAAGCCAGAGAACAAGCAGAGGCTGCCACAGGAGATCCTGGGCAAGTAATCAGACCAATAATCAGATGTaGACTCTACACAGACTGCAC +
Preference number: 2 (lower is better)
Translates to: PSQRTSRGCHRRSWASNQTNNQM*TLHRLH
Trigger: GTGCAGTCTGTGTAGAGTGCACATCTGATTATTGGT...CTGATTACTTGCCCAGGATCTCCTGTGGCAGCCTCTGCTTGTTCTCTGGCTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR GCA 90 bp CCCAGGAGGCAGATCTGGCCTAAATACGGAGATGCGTACAAAGAAGACCTAGGAAGCTCTGACAAAACTTaGCTTCTGGGTGTGGAGACA +
Preference number: 2 (lower is better)
Translates to: PRRQIWPKYGDAYKEDLGSSDKT*LLGVET
Trigger: TGTCTCCACACCCAGAAGGCAAGTTTTGTCAGAGCT...TCCTAGGTCTTCTTTGTACGCATCTCCGTATTTAGGCCAGATCTGCCTCCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CCA 90 bp GTGGCCACTCTATACCAAAGCCAAAGAACTGCAGAGTACTCCTCTTGGTTGGGGACACACCTATCTTACTaGAAGCCTCCCTCTCTGTGT +
Preference number: 2 (lower is better)
Translates to: VATLYQSQRTAEYSSWLGTHLSY*KPPSLC
Trigger: ACACAGAGAGGGAGGCTTCCAGTAAGATAGGTGTGT...CCCCAACCAAGAGGAGTACTCTGCAGTTCTTTGGCTTTGGTATAGAGTGGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR TCA 90 bp GGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGCTTACCAGTACCAGACTaGGATTGGGCAATTAAGTTC +
Preference number: 2 (lower is better)
Translates to: GVFVCRFYLAKHGQHEGSLPVPD*DWAIKF
Trigger: GAACTTAATTGCCCAATCTCAGTCTGGTACTGGTAA...GCTGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000562519.5
ENST00000568408.5
ENST00000568460.5
3UTR CAA 90 bp GGTTGGGGTTTCATATTGCTCTTGCAATTCAGTTTCCTCTCATCTTaGCTGTCATTTCGTGGGTACCAACAGCCTTGGCCAGGTGTGAGA +
Preference number: 2 (lower is better)
Translates to: GWGFILLLQFSFLSS*LSFRGYQQPWPGVR
Trigger: TCTCACACCTGGCCAAGGCTGTTGGTACCCACGAAATGACAGCAAAGATGAGAGGAAACTGAATTGCAAGAGCAATATGAAACCCCAACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR TCA 90 bp TGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCATTACCAGTACCAGACTaGGATTGGGCAATTAAGTTC +
Preference number: 2 (lower is better)
Translates to: WGYLFAGSTWLSMASTKALPVPD*DWAIKF
Trigger: GAACTTAATTGCCCAATCTCAGTCTGGTACTGGTAA...TGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000562519.5
ENST00000568408.5
ENST00000568460.5
3UTR-3UTR GCA 90 bp TGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCATTCATCTGTCTTCTCTaGATTGGCATTGGTCTTGAC +
Preference number: 2 (lower is better)
Translates to: WGYLFAGSTWLSMASTKAFICLL*IGIGLD
Trigger: GTCAAGACCAATGCCAATGCAGAGAAGACAGATGAA...TGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000568408.5
3UTR-3UTR CCA 90 bp CCGAGAGGTTGGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTGACTAGGACAGGGGGCTaGCAATACTCAGATGAGCTG +
Preference number: 2 (lower is better)
Translates to: PRGWHFGPCLFNKFPSAVTRTGG*QYSDEL
Trigger: CAGCTCATCTGAGTATTGCCAGCCCCCTGTCCTAGT...CACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCTCGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CCA 90 bp CCCAGGAGGCAGATCTGGCCTAAATACGGAGATGCGTACAAAGAAGACCTAGGAAGTACTCCTCTTGGTTaGGGTTTCATATTGCTCTTG +
Preference number: 2 (lower is better)
Translates to: PRRQIWPKYGDAYKEDLGSTPLG*GFILLL
Trigger: CAAGAGCAATATGAAACCCCAACCAAGAGGAGTACT...TCCTAGGTCTTCTTTGTACGCATCTCCGTATTTAGGCCAGATCTGCCTCCTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR TCA 90 bp AAAGTGGCCACTCTATACCAAAGCCAAAGAACTGCAGAGTACTCCTCTTGGTTGTGTTGCAAATGCTCATaGGACCAGGTTTTGTGGCAC +
Preference number: 2 (lower is better)
Translates to: KVATLYQSQRTAEYSSWLCCKCS*DQVLWH
Trigger: GTGCCACAAAACCTGGTCTCATGAGCATTTGCAACA...CAACCAAGAGGAGTACTCTGCAGTTCTTTGGCTTTGGTATAGAGTGGCCACTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR TCA 90 bp GCGTACAAAGAAGACCTAGGATCACAATCGTTCTTAGCCATCAAACTCTTCTTCGAGCAAAGGCCTTGGTaGTACTCTTGCCTTGGACAG +
Preference number: 2 (lower is better)
Translates to: AYKEDLGSQSFLAIKLFFEQRPW*YSCLGQ
Trigger: CTGTCCAAGGCAAGAGTATCACCAAGGCCTTTGCTC...GAAGAAGAGTTTGATGGCTAAGAACGATTGTGATCCTAGGTCTTCTTTGTACGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR TCA 90 bp AGGCAGATCTGGCCTAAATACGGAGATGCGTACAAAGAAGACCTAGGATCACAAAGCCTTGGCCAGGTGTaGGAAGTGTCCATTACTATT +
Preference number: 2 (lower is better)
Translates to: RQIWPKYGDAYKEDLGSQSLGQV*EVSITI
Trigger: AATAGTAATGGACACTTCTCACACCTGGCCAAGGCT...TTGTGATCCTAGGTCTTCTTTGTACGCATCTCCGTATTTAGGCCAGATCTGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR GCA 90 bp GGAGATGCGTACAAAGAAGACCTAGGATCACAATCGTTCTTAGCCATCAAACTCTCCTCTGCTGCCTCATaGCATTCCAAACATGATGGC +
Preference number: 2 (lower is better)
Translates to: GDAYKEDLGSQSFLAIKLSSAAS*HSKHDG
Trigger: GCCATCATGTTTGGAATGGCATGAGGCAGCAGAGGA...GAGTTTGATGGCTAAGAACGATTGTGATCCTAGGTCTTCTTTGTACGCATCTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CAA 90 bp AGTCCTGTGACACAAACCCATATACACAACCGAGAGGTTGGCATTTaGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTGGGCACTA +
Preference number: 2 (lower is better)
Translates to: SPVTQTHIHNREVGI*VHAYLTNSLLLWAL
Trigger: TAGTGCCCACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCTCGGTTGTGTATATGGGTTTGTGTCACAGGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CAA 90 bp AGTGGCCACTCTATACCAAAGCCAAAGAACTGCAGAGTACTCCTCTaGGTTGGGGTTTCATATTGCTCTTGCAATTCAGTTTCCTCTCAT +
Preference number: 2 (lower is better)
Translates to: SGHSIPKPKNCRVLL*VGVSYCSCNSVSSH
Trigger: ATGAGAGGAAACTGAATTGCAAGAGCAATATGAAACCCCAACCAAGAGGAGTACTCTGCAGTTCTTTGGCTTTGGTATAGAGTGGCCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR TCA 90 bp TACTCTTGCCTTGGACAGATAAATGGTGGTAGTGTAGCTAGTCCCTCAGTTGCAATTTGTGACTACTGCTaGTCACATCTAGAACTGCCT +
Preference number: 2 (lower is better)
Translates to: YSCLGQINGGSVASPSVAICDYC*SHLELP
Trigger: AGGCAGTTCTAGATGTGATCAGCAGTAGTCACAAAT...TGCAACTGAGGGACTAGCTACACTACCACCATTTATCTGTCCAAGGCAAGAGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR TCA 90 bp GAGAGACATAGACACTGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGCATTGGCATTGGTCTTaGCAACAGCACCTTTATAGA +
Preference number: 2 (lower is better)
Translates to: ERHRHWGYLFAGSTWLSMHWHWS*QQHLYR
Trigger: TCTATAAAGGTGCTGTTGTCAAGACCAATGCCAATG...CATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000568408.5
3UTR-3UTR GCA 90 bp GTTTGTATTCCAAAGGCAGTAAACACAGATGTTCAGAAGCCCTTTATAATCAAGGCACTCTACACAGACTaGACCCACCGAGAACAGGTC +
Preference number: 2 (lower is better)
Translates to: VCIPKAVNTDVQKPFIIKALYTD*THREQV
Trigger: GACCTGTTCTCGGTGGGTGCAGTCTGTGTAGAGTGC...CTTGATTATAAAGGGCTTCTGAACATCTGTGTTTACTGCCTTTGGAATACAAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CCA 90 bp ACTGCAGAGTACTCCTCTTGGTTGGGGTTTCATATTGCTCTTGCAATTCAGTTTTGTTTGGGGCTACTGTaGGGTAAGGGGATATTAAGG +
Preference number: 2 (lower is better)
Translates to: TAEYSSWLGFHIALAIQFCLGLL*GKGILR
Trigger: CCTTAATATCCCCTTACCCCACAGTAGCCCCAAACA...AAACTGAATTGCAAGAGCAATATGAAACCCCAACCAAGAGGAGTACTCTGCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CAA 90 bp GCCACTCTATACCAAAGCCAAAGAACTGCAGAGTACTCCTCTTGGTaGGGGTTTCATATTGCTCTTGCAATTCAGTTTCCTCTCATCTTT +
Preference number: 2 (lower is better)
Translates to: ATLYQSQRTAEYSSW*GFHIALAIQFPLIF
Trigger: AAAGATGAGAGGAAACTGAATTGCAAGAGCAATATGAAACCCCAACCAAGAGGAGTACTCTGCAGTTCTTTGGCTTTGGTATAGAGTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CCA 90 bp GGAGATGCGTACAAAGAAGACCTAGGATCACAATCGTTCTTAGCCATCAAACTCTCCAAACATGATGGCTaGGCTTACACACCTATCTTA +
Preference number: 2 (lower is better)
Translates to: GDAYKEDLGSQSFLAIKLSKHDG*AYTPIL
Trigger: TAAGATAGGTGTGTAAGCCCAGCCATCATGTTTGGA...GAGTTTGATGGCTAAGAACGATTGTGATCCTAGGTCTTCTTTGTACGCATCTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR TCA 90 bp GTTTGTATTCCAAAGGCAGTAAACACAGATGTTCAGAAGCCCTTTATAATCAAGATGCCATTCCAAACATaGTGGCTGGGCTTACACACC +
Preference number: 2 (lower is better)
Translates to: VCIPKAVNTDVQKPFIIKMPFQT*WLGLHT
Trigger: GGTGTGTAAGCCCAGCCATCATGTTTGGAATGGCAT...CTTGATTATAAAGGGCTTCTGAACATCTGTGTTTACTGCCTTTGGAATACAAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR TCA 90 bp AGGCAGATCTGGCCTAAATACGGAGATGCGTACAAAGAAGACCTAGGATCACAAAAGATGTCAAATATCTaGAATTATTCCCCAGCTCTG +
Preference number: 2 (lower is better)
Translates to: RQIWPKYGDAYKEDLGSQKMSNI*NYSPAL
Trigger: CAGAGCTGGGGAATAATTTCAGATATTTGACATCTT...TTGTGATCCTAGGTCTTCTTTGTACGCATCTCCGTATTTAGGCCAGATCTGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CCA 90 bp GAGAGACATAGACACTGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGTTTATAGACACAAAGTaGCCATCATTCAAAATCGCA +
Preference number: 2 (lower is better)
Translates to: ERHRHWGYLFAGSTWLSMFIDTK*PSFKIA
Trigger: TGCGATTTTGAATGATGGCCACTTTGTGTCTATAAA...CATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000568408.5
3UTR-3UTR GCA 90 bp TCCATTACTATTGTTTGCTCTGACTATCTTGCGCAAAGATGCCAAGTAAGGCTGATCTCTGTGTATTCATaGCTAATCTTCCAAGGTTGT +
Preference number: 2 (lower is better)
Translates to: SITIVCSDYLAQRCQVRLISVYS*LIFQGC
Trigger: ACAACCTTGGAAGATTAGGCATGAATACACAGAGAT...CAGCCTTACTTGGCATCTTTGCGCAAGATAGTCAGAGCAAACAATAGTAATGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR TCA 90 bp AATGTGGTAGAATTGGCAGTCTGTTGGTCTCTTTGTAATGTCAGATTAAAGAAAGCATCTAGATTAGCATaGAGGAAACACTGGCCAAAT +
Preference number: 2 (lower is better)
Translates to: NVVELAVCWSLCNVRLKKASRLA*RKHWPN
Trigger: ATTTGGCCAGTGTTTCCTTCATGCTAATCTAGATGC...TTTCTTTAATCTGACATTACAAAGAGACCAACAGACTGCCAATTCTACCACATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CAA 90 bp ACTTCCACAGGAGCTGGAGGCTGCCCCATCCACTCCAAGCCAGAGAACAAGCAGGTTTGCAGGTTCTACTaGGCTAAGCATGGCCAGCAC +
Preference number: 3 (lower is better)
Translates to: TSTGAGGCPIHSKPENKQVCRFY*AKHGQH
Trigger: GTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAAC...CTGCTTGTTCTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000562519.5
3UTR CCA 72 bp AAATTCCCTTCTGCTGTGGGCACTAGGACAGGGGGCTaGCAATACTCAGATGAGCTGTCCCACCCCCAAGTC +
Preference number: 3 (lower is better)
Translates to: KFPSAVGTRTGG*QYSDELSHPQV
Trigger: GACTTGGGGGTGGGACAGCTCATCTGAGTATTGCCAGCCCCCTGTCCTAGTGCCCACAGCAGAAGGGAATTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CAA 90 bp ACTTCCACAGGAGCTGGAGGCTGCCCCATCCACTCCAAGCCAGAGAACAAGCAGAGACACTGGGGGTATTaGTTTGCAGGTTCTACTTGG +
Preference number: 3 (lower is better)
Translates to: TSTGAGGCPIHSKPENKQRHWGY*FAGSTW
Trigger: CCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCT...CTGCTTGTTCTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000562519.5
3UTR CCA 72 bp CCCTTTCCACCACTATTCCATTACTTCCACAGGAGCTaGAGGCTGCCCCATCCACTCCAAGCCAGAGAACAA +
Preference number: 3 (lower is better)
Translates to: PFPPLFHYFHRS*RLPHPLQAREQ
Trigger: TTGTTCTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGTAATGGAATAGTGGTGGAAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR TCA 72 bp TCAGGCCTCCTCTGCTGCCTCATGCCATTCCAAACATaGTGGCTGGGCTTACACACCTATCTTACTGGAAGC +
Preference number: 3 (lower is better)
Translates to: SGLLCCLMPFQT*WLGLHTYLTGS
Trigger: GCTTCCAGTAAGATAGGTGTGTAAGCCCAGCCATCATGTTTGGAATGGCATGAGGCAGCAGAGGAGGCCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR TCA 72 bp ACAGACTGCACCCACCGAGAACAGGTCACAGTCCTGTaGCACAAACCCATATACACAACCGAGAGGTTGGCA +
Preference number: 3 (lower is better)
Translates to: TDCTHREQVTVL*HKPIYTTERLA
Trigger: TGCCAACCTCTCGGTTGTGTATATGGGTTTGTGTCACAGGACTGTGACCTGTTCTCGGTGGGTGCAGTCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CCA 72 bp TCCTCTGCTGCCTCATGCCATTCCAAACATGATGGCTaGGCTTACACACCTATCTTACTGGAAGCCTCCCTC +
Preference number: 3 (lower is better)
Translates to: SSAASCHSKHDG*AYTPILLEASL
Trigger: GAGGGAGGCTTCCAGTAAGATAGGTGTGTAAGCCCAGCCATCATGTTTGGAATGGCATGAGGCAGCAGAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CCA 72 bp CTGACATTGGCCCCTTCCCTTCCCAGGAGGCAGATCTaGCCTAAATACGGAGATGCGTACAAAGAAGACCTA +
Preference number: 3 (lower is better)
Translates to: LTLAPSLPRRQI*PKYGDAYKEDL
Trigger: TAGGTCTTCTTTGTACGCATCTCCGTATTTAGGCCAGATCTGCCTCCTGGGAAGGGAAGGGGCCAATGTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CAA 90 bp TTCCTCTCATCTTTGCTGTCATTTCGTGGGTACCAACAGCCTTGGCCAGGTGTGACTTCTCCACAGGACTaGCTTAAGCACAGGCACAGG +
Preference number: 3 (lower is better)
Translates to: FLSSLLSFRGYQQPWPGVTSPQD*LKHRHR
Trigger: CCTGTGCCTGTGCTTAAGCAAGTCCTGTGGAGAAGT...CACACCTGGCCAAGGCTGTTGGTACCCACGAAATGACAGCAAAGATGAGAGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CAA 90 bp CCCAGGAGGCAGATCTGGCCTAAATACGGAGATGCGTACAAAGAAGACCTAGGAACATCTAGAACTGCCTaGAGGCTGGCCATGAAGACT +
Preference number: 3 (lower is better)
Translates to: PRRQIWPKYGDAYKEDLGTSRTA*RLAMKT
Trigger: AGTCTTCATGGCCAGCCTCAAGGCAGTTCTAGATGT...TCCTAGGTCTTCTTTGTACGCATCTCCGTATTTAGGCCAGATCTGCCTCCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CAA 90 bp CCAAGCCAGAGAACAAGCAGAGGCTGCCACAGGAGATCCTGGGCAAGTAATCAGAGTTTCCTCTCATCTTaGCTGTCATTTCGTGGGTAC +
Preference number: 3 (lower is better)
Translates to: PSQRTSRGCHRRSWASNQSFLSS*LSFRGY
Trigger: GTACCCACGAAATGACAGCAAAGATGAGAGGAAACT...CTGATTACTTGCCCAGGATCTCCTGTGGCAGCCTCTGCTTGTTCTCTGGCTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CAA 90 bp CCAAGCCAGAGAACAAGCAGAGGCTGCCACAGGAGATCCTGGGCAAGTAATCAGGAGTACTCCTCTTGGTaGGGGTTTCATATTGCTCTT +
Preference number: 3 (lower is better)
Translates to: PSQRTSRGCHRRSWASNQEYSSW*GFHIAL
Trigger: AAGAGCAATATGAAACCCCAACCAAGAGGAGTACTC...CTGATTACTTGCCCAGGATCTCCTGTGGCAGCCTCTGCTTGTTCTCTGGCTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR GCA 72 bp TTAAGCACAGGCACAGGACCCACCAATAATCAGATGTaGACTCTACACAGACTGCACCCACCGAGAACAGGT +
Preference number: 3 (lower is better)
Translates to: LSTGTGPTNNQM*TLHRLHPPRTG
Trigger: ACCTGTTCTCGGTGGGTGCAGTCTGTGTAGAGTGCACATCTGATTATTGGTGGGTCCTGTGCCTGTGCTTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CAA 90 bp TTCCTCTCATCTTTGCTGTCATTTCGTGGGTACCAACAGCCTTGGCCAGGTGTGGCCTTGGTGATACTCTaGCCTTGGACAGATAAATGG +
Preference number: 3 (lower is better)
Translates to: FLSSLLSFRGYQQPWPGVALVIL*PWTDKW
Trigger: CCATTTATCTGTCCAAGGCAAGAGTATCACCAAGGC...CACACCTGGCCAAGGCTGTTGGTACCCACGAAATGACAGCAAAGATGAGAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CCA 72 bp TTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTaGGCACTAGGACAGGGGGCTGGCAATACTCAGATG +
Preference number: 3 (lower is better)
Translates to: LVHAYLTNSLLL*ALGQGAGNTQM
Trigger: CATCTGAGTATTGCCAGCCCCCTGTCCTAGTGCCCACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CAA 90 bp GGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGCTCCCATACCCAACAGTaGAGACAATTCAAATTCTAT +
Preference number: 3 (lower is better)
Translates to: GVFVCRFYLAKHGQHEGSSHTQQ*RQFKFY
Trigger: ATAGAATTTGAATTGTCTCAACTGTTGGGTATGGGA...GCTGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000568408.5
3UTR TCA 72 bp CAAAGATGCCAAGTAAGGCTGGAGCAAAGGCCTTGGTaGTACTCTTGCCTTGGACAGATAAATGGTGGTAGT +
Preference number: 3 (lower is better)
Translates to: QRCQVRLEQRPW*YSCLGQINGGS
Trigger: ACTACCACCATTTATCTGTCCAAGGCAAGAGTATCACCAAGGCCTTTGCTCCAGCCTTACTTGGCATCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CAA 90 bp TTCCTCTCATCTTTGCTGTCATTTCGTGGGTACCAACAGCCTTGGCCAGGTGTGAAGTGTCCATTACTATaGTTTGCTCTGACTATCTTG +
Preference number: 3 (lower is better)
Translates to: FLSSLLSFRGYQQPWPGVKCPLL*FALTIL
Trigger: CAAGATAGTCAGAGCAAACAATAGTAATGGACACTT...CACACCTGGCCAAGGCTGTTGGTACCCACGAAATGACAGCAAAGATGAGAGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR TCA 72 bp CTTGCCTTCTGGGTGTGGAGACAAAACAAGAATTTGTaGCTACTGCTGATCACATCTAGAACTGCCTTGAGG +
Preference number: 3 (lower is better)
Translates to: LAFWVWRQNKNL*LLLITSRTALR
Trigger: CCTCAAGGCAGTTCTAGATGTGATCAGCAGTAGTCACAAATTCTTGTTTTGTCTCCACACCCAGAAGGCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR TCA 72 bp CCAGGTGTGAGAAGTGTCCATTACTATTGTTTGCTCTaGCTATCTTGCGCAAAGATGCCAAGTAAGGCTGGA +
Preference number: 3 (lower is better)
Translates to: PGVRSVHYYCLL*LSCAKMPSKAG
Trigger: TCCAGCCTTACTTGGCATCTTTGCGCAAGATAGTCAGAGCAAACAATAGTAATGGACACTTCTCACACCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR GCA 72 bp AGAGAAAGTGGCCACTCTATACCAAAGCCAAAGAACTaGAGAGTACTCCTCTTGGTTGGGGTTTCATATTGC +
Preference number: 3 (lower is better)
Translates to: RESGHSIPKPKN*RVLLLVGVSYC
Trigger: GCAATATGAAACCCCAACCAAGAGGAGTACTCTGCAGTTCTTTGGCTTTGGTATAGAGTGGCCACTTTCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CCA 72 bp TCATCTTTGCTGTCATTTCGTGGGTACCAACAGCCTTaGCCAGGTGTGAGAAGTGTCCATTACTATTGTTTG +
Preference number: 3 (lower is better)
Translates to: SSLLSFRGYQQP*PGVRSVHYYCL
Trigger: CAAACAATAGTAATGGACACTTCTCACACCTGGCCAAGGCTGTTGGTACCCACGAAATGACAGCAAAGATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CAA 90 bp AAGGATGTAAAAGGGATGTTGCAAATGCTCATGAGACCAGGTTTTGTGGCACGCCGAGAGGTTGGCATTTaGGTCCATGCTTATTTAACA +
Preference number: 3 (lower is better)
Translates to: KDVKGMLQMLMRPGFVARREVGI*VHAYLT
Trigger: TGTTAAATAAGCATGGACCAAAATGCCAACCTCTCG...GCGTGCCACAAAACCTGGTCTCATGAGCATTTGCAACATCCCTTTTACATCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR GCA 72 bp CCATATACACAACCGAGAGGTTGGCATTTTGGTCCATaGTTATTTAACAAATTCCCTTCTGCTGTGGGCACT +
Preference number: 3 (lower is better)
Translates to: PYTQPRGWHFGP*LFNKFPSAVGT
Trigger: AGTGCCCACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCTCGGTTGTGTATATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CCA 72 bp ACCCACCAGGGGAATGTGGTAGAATTGGCAGTCTGTTaGTCTCTTTGTAATGTCAGATTAAAGAAATCACCT +
Preference number: 3 (lower is better)
Translates to: THQGNVVELAVC*SLCNVRLKKSP
Trigger: AGGTGATTTCTTTAATCTGACATTACAAAGAGACCAACAGACTGCCAATTCTACCACATTCCCCTGGTGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CAA 90 bp TCCATTACTATTGTTTGCTCTGACTATCTTGCGCAAAGATGCCAAGTAAGGCTGCTCAGTTGCACCTGTTaGTATTCCAAAGGCAGTAAA +
Preference number: 3 (lower is better)
Translates to: SITIVCSDYLAQRCQVRLLSCTC*YSKGSK
Trigger: TTTACTGCCTTTGGAATACAAACAGGTGCAACTGAG...CAGCCTTACTTGGCATCTTTGCGCAAGATAGTCAGAGCAAACAATAGTAATGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CCA 72 bp TCCTGTGACACAAACCCATATACACAACCGAGAGGTTaGCATTTTGGTCCATGCTTATTTAACAAATTCCCT +
Preference number: 3 (lower is better)
Translates to: SCDTNPYTQPRG*HFGPCLFNKFP
Trigger: AGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCTCGGTTGTGTATATGGGTTTGTGTCACAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CCA 72 bp CTATACCAAAGCCAAAGAACTGCAGAGTACTCCTCTTaGTTGGGGTTTCATATTGCTCTTGCAATTCAGTTT +
Preference number: 3 (lower is better)
Translates to: LYQSQRTAEYSS*LGFHIALAIQF
Trigger: AAACTGAATTGCAAGAGCAATATGAAACCCCAACCAAGAGGAGTACTCTGCAGTTCTTTGGCTTTGGTATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR-3UTR CAA 90 bp GTTTGTATTCCAAAGGCAGTAAACACAGATGTTCAGAAGCCCTTTATAATCAAGGATGTAAAAGGGATGTaGCAAATGCTCATGAGACCA +
Preference number: 3 (lower is better)
Translates to: VCIPKAVNTDVQKPFIIKDVKGM*QMLMRP
Trigger: TGGTCTCATGAGCATTTGCAACATCCCTTTTACATC...CTTGATTATAAAGGGCTTCTGAACATCTGTGTTTACTGCCTTTGGAATACAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp ACTTCCACAGGAGCTGGAGGCTGCCCCATCCACTCCAAGCCAGAGAACAAGCAGGGGCCCATGAGTCAGTaGCCATGGTCCCAGGCGCGG +
Preference number: 4 (lower is better)
Translates to: TSTGAGGCPIHSKPENKQGPMSQ*PWSQAR
Trigger: CCGCGCCTGGGACCATGGCCACTGACTCATGGGCCC...CTGCTTGTTCTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288071.11
ENST00000562519.5
CDS-3UTR CCA 90 bp TATTCCATTACTTCCACAGGAGCTGGAGGCTGCCCCATCCACTCCAAGCCAGAGTGGCACGAGGGATCGTaGGCTCCGGGGGTTCGCGGC +
Preference number: 4 (lower is better)
Translates to: YSITSTGAGGCPIHSKPEWHEGS*APGVRG
Trigger: GCCGCGAACCCCCGGAGCCCACGATCCCTCGTGCCA...CTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGTAATGGAATA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp CCAAGCCAGAGAACAAGCAGAGGCTGCCACAGGAGATCCTGGGCAAGTAATCAGGGTCCCAGGCGCGGGTaGGACGCTCGTGCTGGTGGA +
Preference number: 4 (lower is better)
Translates to: PSQRTSRGCHRRSWASNQGPRRG*DARAGG
Trigger: TCCACCAGCACGAGCGTCCCACCCGCGCCTGGGACC...CTGATTACTTGCCCAGGATCTCCTGTGGCAGCCTCTGCTTGTTCTCTGGCTTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288071.11
ENST00000562519.5
CDS-3UTR GCA 90 bp ACTTCCACAGGAGCTGGAGGCTGCCCCATCCACTCCAAGCCAGAGAACAAGCAGCGGGTGGGACGCTCGTaGTGGTGGATTCGAGGGATG +
Preference number: 4 (lower is better)
Translates to: TSTGAGGCPIHSKPENKQRVGRS*WWIRGM
Trigger: CATCCCTCGAATCCACCAGCACGAGCGTCCCACCCG...CTGCTTGTTCTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288071.11
ENST00000562519.5
CDS-3UTR GCA 90 bp CCAAGCCAGAGAACAAGCAGAGGCTGCCACAGGAGATCCTGGGCAAGTAATCAGGCCCCACTACAAGGCTaGAGACCGGAAGCGGCGCGC +
Preference number: 4 (lower is better)
Translates to: PSQRTSRGCHRRSWASNQAPLQG*RPEAAR
Trigger: GCGCGCCGCTTCCGGTCTGCAGCCTTGTAGTGGGGC...CTGATTACTTGCCCAGGATCTCCTGTGGCAGCCTCTGCTTGTTCTCTGGCTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000562519.5
CDS-3UTR CCA 90 bp GCACTAGGACAGGGGGCTGGCAATACTCAGATGAGCTGTCCCACCCCCAAGTCCGGACGCTCGTGCTGGTaGATTCGAGGGATGGCACGA +
Preference number: 4 (lower is better)
Translates to: ALGQGAGNTQMSCPTPKSGRSCW*IRGMAR
Trigger: TCGTGCCATCCCTCGAATCCACCAGCACGAGCGTCC...GGACTTGGGGGTGGGACAGCTCATCTGAGTATTGCCAGCCCCCTGTCCTAGTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp TGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCATGGCACGAGGGATCGTaGGCTCCGGGGGTTCGCGGC +
Preference number: 4 (lower is better)
Translates to: WGYLFAGSTWLSMASTKAWHEGS*APGVRG
Trigger: GCCGCGAACCCCCGGAGCCCACGATCCCTCGTGCCA...TGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CCA 90 bp ACTTCCACAGGAGCTGGAGGCTGCCCCATCCACTCCAAGCCAGAGAACAAGCAGGGTGGATTCGAGGGATaGCACGAGGGATCGTGGGCT +
Preference number: 4 (lower is better)
Translates to: TSTGAGGCPIHSKPENKQGGFEG*HEGSWA
Trigger: AGCCCACGATCCCTCGTGCCATCCCTCGAATCCACC...CTGCTTGTTCTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288071.11
ENST00000562519.5
CDS-3UTR CCA 90 bp TGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGGTCCCAGGCGCGGGTaGGACGCTCGTGCTGGTGGA +
Preference number: 4 (lower is better)
Translates to: WGYLFAGSTWLSMASTKAGPRRG*DARAGG
Trigger: TCCACCAGCACGAGCGTCCCACCCGCGCCTGGGACC...TGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CCA 90 bp GGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGCGGGCCCATGAGTCAGTaGCCATGGTCCCAGGCGCGG +
Preference number: 4 (lower is better)
Translates to: GVFVCRFYLAKHGQHEGSGPMSQ*PWSQAR
Trigger: CCGCGCCTGGGACCATGGCCACTGACTCATGGGCCC...GCTGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR GCA 90 bp CCAAGCCAGAGAACAAGCAGAGGCTGCCACAGGAGATCCTGGGCAAGTAATCAGGTTCGCGGCAGGCTCTaGTCCAGCCCCACTACAAGG +
Preference number: 4 (lower is better)
Translates to: PSQRTSRGCHRRSWASNQVRGRL*SSPTTR
Trigger: CCTTGTAGTGGGGCTGGAGCAGAGCCTGCCGCGAAC...CTGATTACTTGCCCAGGATCTCCTGTGGCAGCCTCTGCTTGTTCTCTGGCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288071.11
ENST00000562519.5
CDS-3UTR GCA 90 bp GGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGCCGGGTGGGACGCTCGTaGTGGTGGATTCGAGGGATG +
Preference number: 4 (lower is better)
Translates to: GVFVCRFYLAKHGQHEGSRVGRS*WWIRGM
Trigger: CATCCCTCGAATCCACCAGCACGAGCGTCCCACCCG...GCTGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CCA 90 bp CCAAGCCAGAGAACAAGCAGAGGCTGCCACAGGAGATCCTGGGCAAGTAATCAGGTGGGACGCTCGTGCTaGTGGATTCGAGGGATGGCA +
Preference number: 4 (lower is better)
Translates to: PSQRTSRGCHRRSWASNQVGRSC*WIRGMA
Trigger: TGCCATCCCTCGAATCCACCAGCACGAGCGTCCCAC...CTGATTACTTGCCCAGGATCTCCTGTGGCAGCCTCTGCTTGTTCTCTGGCTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288071.11
ENST00000562519.5
CDS-3UTR CCA 90 bp GGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGCATGAGTCAGTGGCCATaGTCCCAGGCGCGGGTGGGA +
Preference number: 4 (lower is better)
Translates to: GVFVCRFYLAKHGQHEGSMSQWP*SQARVG
Trigger: TCCCACCCGCGCCTGGGACCATGGCCACTGACTCAT...GCTGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR TCA 90 bp GAGAGACATAGACACTGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGAGCGGCGCGCCACAGTaGCGTCGGAGGCCACTCCTG +
Preference number: 4 (lower is better)
Translates to: ERHRHWGYLFAGSTWLSMSGAPQ*RRRPLL
Trigger: CAGGAGTGGCCTCCGACGTCACTGTGGCGCGCCGCT...CATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000562519.5
CDS-3UTR GCA 90 bp TGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGTTCGCGGCAGGCTCTaGTCCAGCCCCACTACAAGG +
Preference number: 4 (lower is better)
Translates to: WGYLFAGSTWLSMASTKAVRGRL*SSPTTR
Trigger: CCTTGTAGTGGGGCTGGAGCAGAGCCTGCCGCGAAC...TGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000562519.5
ENST00000568008.5
CDS-3UTR CCA 90 bp GAGAGACATAGACACTGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGTGGCACGAGGGATCGTaGGCTCCGGGGGTTCGCGGC +
Preference number: 4 (lower is better)
Translates to: ERHRHWGYLFAGSTWLSMWHEGS*APGVRG
Trigger: GCCGCGAACCCCCGGAGCCCACGATCCCTCGTGCCA...CATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CCA 90 bp GGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGCGGACGCTCGTGCTGGTaGATTCGAGGGATGGCACGA +
Preference number: 4 (lower is better)
Translates to: GVFVCRFYLAKHGQHEGSGRSCW*IRGMAR
Trigger: TCGTGCCATCCCTCGAATCCACCAGCACGAGCGTCC...GCTGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CCA 90 bp GGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGCGTGGGACGCTCGTGCTaGTGGATTCGAGGGATGGCA +
Preference number: 4 (lower is better)
Translates to: GVFVCRFYLAKHGQHEGSVGRSC*WIRGMA
Trigger: TGCCATCCCTCGAATCCACCAGCACGAGCGTCCCAC...GCTGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CCA 90 bp GAGAGACATAGACACTGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGGTCCCAGGCGCGGGTaGGACGCTCGTGCTGGTGGA +
Preference number: 4 (lower is better)
Translates to: ERHRHWGYLFAGSTWLSMGPRRG*DARAGG
Trigger: TCCACCAGCACGAGCGTCCCACCCGCGCCTGGGACC...CATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CCA 90 bp GTGGCCACTCTATACCAAAGCCAAAGAACTGCAGAGTACTCCTCTTGGTTGGGGATGAGTCAGTGGCCATaGTCCCAGGCGCGGGTGGGA +
Preference number: 4 (lower is better)
Translates to: VATLYQSQRTAEYSSWLGMSQWP*SQARVG
Trigger: TCCCACCCGCGCCTGGGACCATGGCCACTGACTCAT...CCCCAACCAAGAGGAGTACTCTGCAGTTCTTTGGCTTTGGTATAGAGTGGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp TGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAATGAGTCAGTGGCCATaGTCCCAGGCGCGGGTGGGA +
Preference number: 4 (lower is better)
Translates to: WGYLFAGSTWLSMASTKAMSQWP*SQARVG
Trigger: TCCCACCCGCGCCTGGGACCATGGCCACTGACTCAT...TGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CCA 90 bp ACTAGGACAGGGGGCTGGCAATACTCAGATGAGCTGTCCCACCCCCAAGTCCAAAATTCCCTTCTGCTGTaGGCACTAGGACAGGGGGCT +
Preference number: 4 (lower is better)
Translates to: TRTGGWQYSDELSHPQVQNSLLL*ALGQGA
Trigger: AGCCCCCTGTCCTAGTGCCCACAGCAGAAGGGAATT...TTGGACTTGGGGGTGGGACAGCTCATCTGAGTATTGCCAGCCCCCTGTCCTAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp ACTAGGACAGGGGGCTGGCAATACTCAGATGAGCTGTCCCACCCCCAAGTCCAAGGGTACCAACAGCCTTaGCCAGGTGTGAGAAGTGTC +
Preference number: 4 (lower is better)
Translates to: TRTGGWQYSDELSHPQVQGYQQP*PGVRSV
Trigger: GACACTTCTCACACCTGGCCAAGGCTGTTGGTACCC...TTGGACTTGGGGGTGGGACAGCTCATCTGAGTATTGCCAGCCCCCTGTCCTAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp ACTAGGACAGGGGGCTGGCAATACTCAGATGAGCTGTCCCACCCCCAAGTCCAACCCAGGAGGCAGATCTaGCCTAAATACGGAGATGCG +
Preference number: 4 (lower is better)
Translates to: TRTGGWQYSDELSHPQVQPRRQI*PKYGDA
Trigger: CGCATCTCCGTATTTAGGCCAGATCTGCCTCCTGGG...TTGGACTTGGGGGTGGGACAGCTCATCTGAGTATTGCCAGCCCCCTGTCCTAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR GCA 90 bp GCACTAGGACAGGGGGCTGGCAATACTCAGATGAGCTGTCCCACCCCCAAGTCCAGCTCTGACAAAACTTaGCTTCTGGGTGTGGAGACA +
Preference number: 4 (lower is better)
Translates to: ALGQGAGNTQMSCPTPKSSSDKT*LLGVET
Trigger: TGTCTCCACACCCAGAAGGCAAGTTTTGTCAGAGCT...GGACTTGGGGGTGGGACAGCTCATCTGAGTATTGCCAGCCCCCTGTCCTAGTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp TGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGGACGCTCGTGCTGGTaGATTCGAGGGATGGCACGA +
Preference number: 4 (lower is better)
Translates to: WGYLFAGSTWLSMASTKAGRSCW*IRGMAR
Trigger: TCGTGCCATCCCTCGAATCCACCAGCACGAGCGTCC...TGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CCA 90 bp TGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGTGGGACGCTCGTGCTaGTGGATTCGAGGGATGGCA +
Preference number: 4 (lower is better)
Translates to: WGYLFAGSTWLSMASTKAVGRSC*WIRGMA
Trigger: TGCCATCCCTCGAATCCACCAGCACGAGCGTCCCAC...TGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CCA 90 bp GAGAGACATAGACACTGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGGGCCCATGAGTCAGTaGCCATGGTCCCAGGCGCGG +
Preference number: 4 (lower is better)
Translates to: ERHRHWGYLFAGSTWLSMGPMSQ*PWSQAR
Trigger: CCGCGCCTGGGACCATGGCCACTGACTCATGGGCCC...CATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CCA 90 bp GCACTAGGACAGGGGGCTGGCAATACTCAGATGAGCTGTCCCACCCCCAAGTCCTGTTTGGGGCTACTGTaGGGTAAGGGGATATTAAGG +
Preference number: 4 (lower is better)
Translates to: ALGQGAGNTQMSCPTPKSCLGLL*GKGILR
Trigger: CCTTAATATCCCCTTACCCCACAGTAGCCCCAAACA...GGACTTGGGGGTGGGACAGCTCATCTGAGTATTGCCAGCCCCCTGTCCTAGTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp TCCATTACTATTGTTTGCTCTGACTATCTTGCGCAAAGATGCCAAGTAAGGCTGGGTCCCAGGCGCGGGTaGGACGCTCGTGCTGGTGGA +
Preference number: 4 (lower is better)
Translates to: SITIVCSDYLAQRCQVRLGPRRG*DARAGG
Trigger: TCCACCAGCACGAGCGTCCCACCCGCGCCTGGGACC...CAGCCTTACTTGGCATCTTTGCGCAAGATAGTCAGAGCAAACAATAGTAATGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp GGAGATGCGTACAAAGAAGACCTAGGATCACAATCGTTCTTAGCCATCAAACTCGGGCCCATGAGTCAGTaGCCATGGTCCCAGGCGCGG +
Preference number: 4 (lower is better)
Translates to: GDAYKEDLGSQSFLAIKLGPMSQ*PWSQAR
Trigger: CCGCGCCTGGGACCATGGCCACTGACTCATGGGCCC...GAGTTTGATGGCTAAGAACGATTGTGATCCTAGGTCTTCTTTGTACGCATCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp TGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCATACTTCCACAGGAGCTaGAGGCTGCCCCATCCACTC +
Preference number: 4 (lower is better)
Translates to: WGYLFAGSTWLSMASTKAYFHRS*RLPHPL
Trigger: GAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGTA...TGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000562519.5
CDS-3UTR CCA 90 bp GCACTAGGACAGGGGGCTGGCAATACTCAGATGAGCTGTCCCACCCCCAAGTCCACACAACCGAGAGGTTaGCATTTTGGTCCATGCTTA +
Preference number: 4 (lower is better)
Translates to: ALGQGAGNTQMSCPTPKSTQPRG*HFGPCL
Trigger: TAAGCATGGACCAAAATGCCAACCTCTCGGTTGTGT...GGACTTGGGGGTGGGACAGCTCATCTGAGTATTGCCAGCCCCCTGTCCTAGTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp GCACTAGGACAGGGGGCTGGCAATACTCAGATGAGCTGTCCCACCCCCAAGTCCATTAAAGAAATCACCTaGAGGCTGACATTGGCCCCT +
Preference number: 4 (lower is better)
Translates to: ALGQGAGNTQMSCPTPKSIKEIT*RLTLAP
Trigger: AGGGGCCAATGTCAGCCTCCAGGTGATTTCTTTAAT...GGACTTGGGGGTGGGACAGCTCATCTGAGTATTGCCAGCCCCCTGTCCTAGTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR TCA 90 bp CCCAGGAGGCAGATCTGGCCTAAATACGGAGATGCGTACAAAGAAGACCTAGGACTGGCAATACTCAGATaGGCTGTCCCACCCCCAAGT +
Preference number: 4 (lower is better)
Translates to: PRRQIWPKYGDAYKEDLGLAILR*AVPPPS
Trigger: ACTTGGGGGTGGGACAGCTCATCTGAGTATTGCCAG...TCCTAGGTCTTCTTTGTACGCATCTCCGTATTTAGGCCAGATCTGCCTCCTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR GCA 90 bp GTGGCCACTCTATACCAAAGCCAAAGAACTGCAGAGTACTCCTCTTGGTTGGGGGCACTCTACACAGACTaGACCCACCGAGAACAGGTC +
Preference number: 4 (lower is better)
Translates to: VATLYQSQRTAEYSSWLGALYTD*THREQV
Trigger: GACCTGTTCTCGGTGGGTGCAGTCTGTGTAGAGTGC...CCCCAACCAAGAGGAGTACTCTGCAGTTCTTTGGCTTTGGTATAGAGTGGCCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp GGTCACAGTCCTGTGACACAAACCCATATACACAACCGAGAGGTTGGCATTTTGGGTGGATTCGAGGGATaGCACGAGGGATCGTGGGCT +
Preference number: 4 (lower is better)
Translates to: GHSPVTQTHIHNREVGILGGFEG*HEGSWA
Trigger: AGCCCACGATCCCTCGTGCCATCCCTCGAATCCACC...CAAAATGCCAACCTCTCGGTTGTGTATATGGGTTTGTGTCACAGGACTGTGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp GAGAGACATAGACACTGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGATGAGTCAGTGGCCATaGTCCCAGGCGCGGGTGGGA +
Preference number: 4 (lower is better)
Translates to: ERHRHWGYLFAGSTWLSMMSQWP*SQARVG
Trigger: TCCCACCCGCGCCTGGGACCATGGCCACTGACTCAT...CATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CCA 90 bp CACAAAGTGGCCATCATTCAAAATCGCATCCCATACCCAACAGTTGAGACAATTGGGCCCATGAGTCAGTaGCCATGGTCCCAGGCGCGG +
Preference number: 4 (lower is better)
Translates to: HKVAIIQNRIPYPTVETIGPMSQ*PWSQAR
Trigger: CCGCGCCTGGGACCATGGCCACTGACTCATGGGCCC...AATTGTCTCAACTGTTGGGTATGGGATGCGATTTTGAATGATGGCCACTTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000568408.5
CDS-3UTR CCA 90 bp ACTTCCACAGGAGCTGGAGGCTGCCCCATCCACTCCAAGCCAGAGAACAAGCAGGAGAGACATAGACACTaGGGGTATTTGTTTGCAGGT +
Preference number: 4 (lower is better)
Translates to: TSTGAGGCPIHSKPENKQERHRH*GYLFAG
Trigger: ACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC...CTGCTTGTTCTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288071.11
ENST00000562519.5
CDS-3UTR TCA 90 bp TGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCACATTGGCATTGGTCTTaGCAACAGCACCGACTCAGC +
Preference number: 4 (lower is better)
Translates to: WGYLFAGSTWLSMASTKAHWHWS*QQHRLS
Trigger: GCTGAGTCGGTGCTGTTGTCAAGACCAATGCCAATG...TGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000568460.5
CDS-3UTR GCA 90 bp ACTTCCACAGGAGCTGGAGGCTGCCCCATCCACTCCAAGCCAGAGAACAAGCAGACCAATAATCAGATGTaGACTCTACACAGACTGCAC +
Preference number: 4 (lower is better)
Translates to: TSTGAGGCPIHSKPENKQTNNQM*TLHRLH
Trigger: GTGCAGTCTGTGTAGAGTGCACATCTGATTATTGGT...CTGCTTGTTCTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR GCA 90 bp ACTAGGACAGGGGGCTGGCAATACTCAGATGAGCTGTCCCACCCCCAAGTCCAACCAAAGCCAAAGAACTaGAGAGTACTCCTCTTGGTT +
Preference number: 4 (lower is better)
Translates to: TRTGGWQYSDELSHPQVQPKPKN*RVLLLV
Trigger: AACCAAGAGGAGTACTCTGCAGTTCTTTGGCTTTGG...TTGGACTTGGGGGTGGGACAGCTCATCTGAGTATTGCCAGCCCCCTGTCCTAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp GAGAGACATAGACACTGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGTGGGACGCTCGTGCTaGTGGATTCGAGGGATGGCA +
Preference number: 4 (lower is better)
Translates to: ERHRHWGYLFAGSTWLSMVGRSC*WIRGMA
Trigger: TGCCATCCCTCGAATCCACCAGCACGAGCGTCCCAC...CATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CCA 90 bp GGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGCTTTGCAGGTTCTACTTaGCTAAGCATGGCCAGCACG +
Preference number: 4 (lower is better)
Translates to: GVFVCRFYLAKHGQHEGSFAGST*LSMAST
Trigger: CGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAA...GCTGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CCA 90 bp CCCAGGAGGCAGATCTGGCCTAAATACGGAGATGCGTACAAAGAAGACCTAGGATGCCACAGGAGATCCTaGGCAAGTAATCAGCCACAG +
Preference number: 4 (lower is better)
Translates to: PRRQIWPKYGDAYKEDLGCHRRS*ASNQPQ
Trigger: CTGTGGCTGATTACTTGCCCAGGATCTCCTGTGGCA...TCCTAGGTCTTCTTTGTACGCATCTCCGTATTTAGGCCAGATCTGCCTCCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR TCA 90 bp ACTTCCACAGGAGCTGGAGGCTGCCCCATCCACTCCAAGCCAGAGAACAAGCAGTACTATTGTTTGCTCTaGCTATCTTGCGCAAAGATG +
Preference number: 4 (lower is better)
Translates to: TSTGAGGCPIHSKPENKQYYCLL*LSCAKM
Trigger: CATCTTTGCGCAAGATAGTCAGAGCAAACAATAGTA...CTGCTTGTTCTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR TCA 90 bp GGTCACAGTCCTGTGACACAAACCCATATACACAACCGAGAGGTTGGCATTTTGAAATCACCTGGAGGCTaGCATTGGCCCCTTCCCTTC +
Preference number: 4 (lower is better)
Translates to: GHSPVTQTHIHNREVGILKSPGG*HWPLPF
Trigger: GAAGGGAAGGGGCCAATGTCAGCCTCCAGGTGATTT...CAAAATGCCAACCTCTCGGTTGTGTATATGGGTTTGTGTCACAGGACTGTGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR GCA 90 bp ACTGCAGAGTACTCCTCTTGGTTGGGGTTTCATATTGCTCTTGCAATTCAGTTTGTTCGCGGCAGGCTCTaGTCCAGCCCCACTACAAGG +
Preference number: 4 (lower is better)
Translates to: TAEYSSWLGFHIALAIQFVRGRL*SSPTTR
Trigger: CCTTGTAGTGGGGCTGGAGCAGAGCCTGCCGCGAAC...AAACTGAATTGCAAGAGCAATATGAAACCCCAACCAAGAGGAGTACTCTGCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp TCATTCAAAATCGCATCCCATACCCAACAGTTGAGACAATTCAAATTCTATGACGGTCCCAGGCGCGGGTaGGACGCTCGTGCTGGTGGA +
Preference number: 4 (lower is better)
Translates to: SFKIASHTQQLRQFKFYDGPRRG*DARAGG
Trigger: TCCACCAGCACGAGCGTCCCACCCGCGCCTGGGACC...GTCATAGAATTTGAATTGTCTCAACTGTTGGGTATGGGATGCGATTTTGAATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000568408.5
CDS-3UTR CCA 90 bp TGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCATTTGCAGGTTCTACTTaGCTAAGCATGGCCAGCACG +
Preference number: 4 (lower is better)
Translates to: WGYLFAGSTWLSMASTKAFAGST*LSMAST
Trigger: CGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAA...TGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR TCA 90 bp CCAAGCCAGAGAACAAGCAGAGGCTGCCACAGGAGATCCTGGGCAAGTAATCAGTTACCAGTACCAGACTaGGATTGGGCAATTAAGTTC +
Preference number: 4 (lower is better)
Translates to: PSQRTSRGCHRRSWASNQLPVPD*DWAIKF
Trigger: GAACTTAATTGCCCAATCTCAGTCTGGTACTGGTAA...CTGATTACTTGCCCAGGATCTCCTGTGGCAGCCTCTGCTTGTTCTCTGGCTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288071.11
ENST00000562519.5
CDS-3UTR TCA 90 bp GGTCACAGTCCTGTGACACAAACCCATATACACAACCGAGAGGTTGGCATTTTGGAGCAAAGGCCTTGGTaGTACTCTTGCCTTGGACAG +
Preference number: 4 (lower is better)
Translates to: GHSPVTQTHIHNREVGILEQRPW*YSCLGQ
Trigger: CTGTCCAAGGCAAGAGTATCACCAAGGCCTTTGCTC...CAAAATGCCAACCTCTCGGTTGTGTATATGGGTTTGTGTCACAGGACTGTGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR GCA 90 bp TATTCCATTACTTCCACAGGAGCTGGAGGCTGCCCCATCCACTCCAAGCCAGAGTTCATCTGTCTTCTCTaGATTGGCATTGGTCTTGAC +
Preference number: 4 (lower is better)
Translates to: YSITSTGAGGCPIHSKPEFICLL*IGIGLD
Trigger: GTCAAGACCAATGCCAATGCAGAGAAGACAGATGAA...CTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGTAATGGAATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR GCA 90 bp GGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGCCTGGGGGTATTTGTTTaGAGGTTCTACTTGGCTAAG +
Preference number: 4 (lower is better)
Translates to: GVFVCRFYLAKHGQHEGSLGVFV*RFYLAK
Trigger: CTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAG...GCTGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR GCA 90 bp ACTTCCACAGGAGCTGGAGGCTGCCCCATCCACTCCAAGCCAGAGAACAAGCAGCTCTTTCCAATTTATTaGCTCGAACAGCATAAGCTA +
Preference number: 4 (lower is better)
Translates to: TSTGAGGCPIHSKPENKQLFPIY*LEQHKL
Trigger: TAGCTTATGCTGTTCGAGGCAATAAATTGGAAAGAG...CTGCTTGTTCTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288071.11
ENST00000562519.5
CDS-3UTR CCA 90 bp CCGAGAGGTTGGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTGTACTTCCACAGGAGCTaGAGGCTGCCCCATCCACTC +
Preference number: 4 (lower is better)
Translates to: PRGWHFGPCLFNKFPSAVYFHRS*RLPHPL
Trigger: GAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGTA...CACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCTCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp TTCCTCTCATCTTTGCTGTCATTTCGTGGGTACCAACAGCCTTGGCCAGGTGTGCAGATCACATTTGTTTaGGGCTACTGTGGGGTAAGG +
Preference number: 4 (lower is better)
Translates to: FLSSLLSFRGYQQPWPGVQITFV*GYCGVR
Trigger: CCTTACCCCACAGTAGCCCCAAACAAATGTGATCTG...CACACCTGGCCAAGGCTGTTGGTACCCACGAAATGACAGCAAAGATGAGAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR GCA 90 bp TGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCACTGGGGGTATTTGTTTaGAGGTTCTACTTGGCTAAG +
Preference number: 4 (lower is better)
Translates to: WGYLFAGSTWLSMASTKALGVFV*RFYLAK
Trigger: CTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAG...TGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CCA 90 bp GGTCACAGTCCTGTGACACAAACCCATATACACAACCGAGAGGTTGGCATTTTGTCCTTGGAGAAGCTGTaGTTTCAGCCGAAGCTCTTC +
Preference number: 4 (lower is better)
Translates to: GHSPVTQTHIHNREVGILSLEKL*FQPKLF
Trigger: GAAGAGCTTCGGCTGAAACCACAGCTTCTCCAAGGA...CAAAATGCCAACCTCTCGGTTGTGTATATGGGTTTGTGTCACAGGACTGTGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp TGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGAGAGACATAGACACTaGGGGTATTTGTTTGCAGGT +
Preference number: 4 (lower is better)
Translates to: WGYLFAGSTWLSMASTKAERHRH*GYLFAG
Trigger: ACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC...TGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CCA 90 bp GAGAGACATAGACACTGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGTGCCACAGGAGATCCTaGGCAAGTAATCAGCCACAG +
Preference number: 4 (lower is better)
Translates to: ERHRHWGYLFAGSTWLSMCHRRS*ASNQPQ
Trigger: CTGTGGCTGATTACTTGCCCAGGATCTCCTGTGGCA...CATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000562519.5
CDS-3UTR GCA 90 bp CCAAGCCAGAGAACAAGCAGAGGCTGCCACAGGAGATCCTGGGCAAGTAATCAGCTCTTTCCAATTTATTaGCTCGAACAGCATAAGCTA +
Preference number: 4 (lower is better)
Translates to: PSQRTSRGCHRRSWASNQLFPIY*LEQHKL
Trigger: TAGCTTATGCTGTTCGAGGCAATAAATTGGAAAGAG...CTGATTACTTGCCCAGGATCTCCTGTGGCAGCCTCTGCTTGTTCTCTGGCTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288071.11
ENST00000562519.5
CDS-3UTR GCA 90 bp CCAAGCCAGAGAACAAGCAGAGGCTGCCACAGGAGATCCTGGGCAAGTAATCAGATCTCTGTGTATTCATaGCTAATCTTCCAAGGTTGT +
Preference number: 4 (lower is better)
Translates to: PSQRTSRGCHRRSWASNQISVYS*LIFQGC
Trigger: ACAACCTTGGAAGATTAGGCATGAATACACAGAGAT...CTGATTACTTGCCCAGGATCTCCTGTGGCAGCCTCTGCTTGTTCTCTGGCTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288071.11
ENST00000562519.5
CDS-3UTR CCA 90 bp GAGAGACATAGACACTGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGTCCTTGGAGAAGCTGTaGTTTCAGCCGAAGCTCTTC +
Preference number: 4 (lower is better)
Translates to: ERHRHWGYLFAGSTWLSMSLEKL*FQPKLF
Trigger: GAAGAGCTTCGGCTGAAACCACAGCTTCTCCAAGGA...CATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000568460.5
CDS-3UTR CCA 90 bp GAGAGACATAGACACTGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGTTTGCAGGTTCTACTTaGCTAAGCATGGCCAGCACG +
Preference number: 4 (lower is better)
Translates to: ERHRHWGYLFAGSTWLSMFAGST*LSMAST
Trigger: CGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAA...CATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CCA 90 bp TTCCTCTCATCTTTGCTGTCATTTCGTGGGTACCAACAGCCTTGGCCAGGTGTGTCCAAACATGATGGCTaGGCTTACACACCTATCTTA +
Preference number: 4 (lower is better)
Translates to: FLSSLLSFRGYQQPWPGVSKHDG*AYTPIL
Trigger: TAAGATAGGTGTGTAAGCCCAGCCATCATGTTTGGA...CACACCTGGCCAAGGCTGTTGGTACCCACGAAATGACAGCAAAGATGAGAGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR TCA 90 bp AGGCAGATCTGGCCTAAATACGGAGATGCGTACAAAGAAGACCTAGGATCACAATGTTGCAAATGCTCATaGGACCAGGTTTTGTGGCAC +
Preference number: 4 (lower is better)
Translates to: RQIWPKYGDAYKEDLGSQCCKCS*DQVLWH
Trigger: GTGCCACAAAACCTGGTCTCATGAGCATTTGCAACA...TTGTGATCCTAGGTCTTCTTTGTACGCATCTCCGTATTTAGGCCAGATCTGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR GCA 90 bp GGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGCCTCTTTCCAATTTATTaGCTCGAACAGCATAAGCTA +
Preference number: 4 (lower is better)
Translates to: GVFVCRFYLAKHGQHEGSLFPIY*LEQHKL
Trigger: TAGCTTATGCTGTTCGAGGCAATAAATTGGAAAGAG...GCTGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
CDS-3UTR GCA 90 bp AGAGGTTGGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTGGGCTCCTCTGCTGCCTCATaGCATTCCAAACATGATGGC +
Preference number: 4 (lower is better)
Translates to: RGWHFGPCLFNKFPSAVGSSAAS*HSKHDG
Trigger: GCCATCATGTTTGGAATGGCATGAGGCAGCAGAGGA...GCCCACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR GCA 90 bp ACTGCAGAGTACTCCTCTTGGTTGGGGTTTCATATTGCTCTTGCAATTCAGTTTTCAGGCCTCCTCTGCTaGCTCATGCCATTCCAAACA +
Preference number: 4 (lower is better)
Translates to: TAEYSSWLGFHIALAIQFSGLLC*LMPFQT
Trigger: TGTTTGGAATGGCATGAGGCAGCAGAGGAGGCCTGA...AAACTGAATTGCAAGAGCAATATGAAACCCCAACCAAGAGGAGTACTCTGCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp GTTTGTATTCCAAAGGCAGTAAACACAGATGTTCAGAAGCCCTTTATAATCAAGGTGGGACGCTCGTGCTaGTGGATTCGAGGGATGGCA +
Preference number: 4 (lower is better)
Translates to: VCIPKAVNTDVQKPFIIKVGRSC*WIRGMA
Trigger: TGCCATCCCTCGAATCCACCAGCACGAGCGTCCCAC...CTTGATTATAAAGGGCTTCTGAACATCTGTGTTTACTGCCTTTGGAATACAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp GGAGATGCGTACAAAGAAGACCTAGGATCACAATCGTTCTTAGCCATCAAACTCTTTGCAGGTTCTACTTaGCTAAGCATGGCCAGCACG +
Preference number: 4 (lower is better)
Translates to: GDAYKEDLGSQSFLAIKLFAGST*LSMAST
Trigger: CGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAA...GAGTTTGATGGCTAAGAACGATTGTGATCCTAGGTCTTCTTTGTACGCATCTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp GCGTACAAAGAAGACCTAGGATCACAATCGTTCTTAGCCATCAAACTCTTCTTCACTAGGACAGGGGGCTaGCAATACTCAGATGAGCTG +
Preference number: 4 (lower is better)
Translates to: AYKEDLGSQSFLAIKLFFTRTGG*QYSDEL
Trigger: CAGCTCATCTGAGTATTGCCAGCCCCCTGTCCTAGT...GAAGAAGAGTTTGATGGCTAAGAACGATTGTGATCCTAGGTCTTCTTTGTACGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp GGTCACAGTCCTGTGACACAAACCCATATACACAACCGAGAGGTTGGCATTTTGGCAGAGTACTCCTCTTaGTTGGGGTTTCATATTGCT +
Preference number: 4 (lower is better)
Translates to: GHSPVTQTHIHNREVGILAEYSS*LGFHIA
Trigger: AGCAATATGAAACCCCAACCAAGAGGAGTACTCTGC...CAAAATGCCAACCTCTCGGTTGTGTATATGGGTTTGTGTCACAGGACTGTGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CAA 72 bp ACAGCCTTGGCCAGGTGTGAGAAGTGTCCATTACTATaGTTTGCTCTGACTATCTTGCGCAAAGATGCCAAG +
Preference number: 4 (lower is better)
Translates to: TALARCEKCPLL*FALTILRKDAK
Trigger: CTTGGCATCTTTGCGCAAGATAGTCAGAGCAAACAATAGTAATGGACACTTCTCACACCTGGCCAAGGCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR TCA 90 bp TCCATTACTATTGTTTGCTCTGACTATCTTGCGCAAAGATGCCAAGTAAGGCTGATGCCATTCCAAACATaGTGGCTGGGCTTACACACC +
Preference number: 4 (lower is better)
Translates to: SITIVCSDYLAQRCQVRLMPFQT*WLGLHT
Trigger: GGTGTGTAAGCCCAGCCATCATGTTTGGAATGGCAT...CAGCCTTACTTGGCATCTTTGCGCAAGATAGTCAGAGCAAACAATAGTAATGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR TCA 90 bp CGAGAGGTTGGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTGGATTATTCCCCAGCTCTaGCAAAACTTGCCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: REVGILVHAYLTNSLLLWIIPQL*QNLPSG
Trigger: CCCAGAAGGCAAGTTTTGTCAGAGCTGGGGAATAAT...CCACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCTCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR TCA 90 bp CCCAGGAGGCAGATCTGGCCTAAATACGGAGATGCGTACAAAGAAGACCTAGGAAAGATGTCAAATATCTaGAATTATTCCCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: PRRQIWPKYGDAYKEDLGKMSNI*NYSPAL
Trigger: CAGAGCTGGGGAATAATTTCAGATATTTGACATCTT...TCCTAGGTCTTCTTTGTACGCATCTCCGTATTTAGGCCAGATCTGCCTCCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR TCA 90 bp CGAGAGGTTGGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTGGAGCCTTGGCCAGGTGTaGGAAGTGTCCATTACTATT +
Preference number: 4 (lower is better)
Translates to: REVGILVHAYLTNSLLLWSLGQV*EVSITI
Trigger: AATAGTAATGGACACTTCTCACACCTGGCCAAGGCT...CCACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCTCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR GCA 90 bp TGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCACTCTTTCCAATTTATTaGCTCGAACAGCATAAGCTA +
Preference number: 4 (lower is better)
Translates to: WGYLFAGSTWLSMASTKALFPIY*LEQHKL
Trigger: TAGCTTATGCTGTTCGAGGCAATAAATTGGAAAGAG...TGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
CDS-3UTR CCA 90 bp GAGAGACATAGACACTGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGAGAGACATAGACACTaGGGGTATTTGTTTGCAGGT +
Preference number: 4 (lower is better)
Translates to: ERHRHWGYLFAGSTWLSMERHRH*GYLFAG
Trigger: ACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC...CATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CCA 90 bp CCGAGAGGTTGGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTGACACACCTATCTTACTaGAAGCCTCCCTCTCTGTGT +
Preference number: 4 (lower is better)
Translates to: PRGWHFGPCLFNKFPSAVTHLSY*KPPSLC
Trigger: ACACAGAGAGGGAGGCTTCCAGTAAGATAGGTGTGT...CACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCTCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp TCCATTACTATTGTTTGCTCTGACTATCTTGCGCAAAGATGCCAAGTAAGGCTGTTTGCTGTCATTTCGTaGGTACCAACAGCCTTGGCC +
Preference number: 4 (lower is better)
Translates to: SITIVCSDYLAQRCQVRLFAVIS*VPTALA
Trigger: GGCCAAGGCTGTTGGTACCCACGAAATGACAGCAAA...CAGCCTTACTTGGCATCTTTGCGCAAGATAGTCAGAGCAAACAATAGTAATGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CAA 72 bp CTCATCTTTGCTGTCATTTCGTGGGTACCAACAGCCTaGGCCAGGTGTGAGAAGTGTCCATTACTATTGTTT +
Preference number: 4 (lower is better)
Translates to: LIFAVISWVPTA*ARCEKCPLLLF
Trigger: AAACAATAGTAATGGACACTTCTCACACCTGGCCAAGGCTGTTGGTACCCACGAAATGACAGCAAAGATGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR TCA 90 bp GAGAGACATAGACACTGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGTTACCAGTACCAGACTaGGATTGGGCAATTAAGTTC +
Preference number: 4 (lower is better)
Translates to: ERHRHWGYLFAGSTWLSMLPVPD*DWAIKF
Trigger: GAACTTAATTGCCCAATCTCAGTCTGGTACTGGTAA...CATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR GCA 90 bp GAGAGACATAGACACTGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGTTCATCTGTCTTCTCTaGATTGGCATTGGTCTTGAC +
Preference number: 4 (lower is better)
Translates to: ERHRHWGYLFAGSTWLSMFICLL*IGIGLD
Trigger: GTCAAGACCAATGCCAATGCAGAGAAGACAGATGAA...CATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000568408.5
ENST00000568460.5
CDS-3UTR GCA 90 bp CGAGAGGTTGGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTGGCTGGGGGTATTTGTTTaGAGGTTCTACTTGGCTAAG +
Preference number: 4 (lower is better)
Translates to: REVGILVHAYLTNSLLLWLGVFV*RFYLAK
Trigger: CTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAG...CCACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCTCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp CGAGAGGTTGGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTGGGAGAGACATAGACACTaGGGGTATTTGTTTGCAGGT +
Preference number: 4 (lower is better)
Translates to: REVGILVHAYLTNSLLLWERHRH*GYLFAG
Trigger: ACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC...CCACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCTCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp TGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCATTTATAGACACAAAGTaGCCATCATTCAAAATCGCA +
Preference number: 4 (lower is better)
Translates to: WGYLFAGSTWLSMASTKAFIDTK*PSFKIA
Trigger: TGCGATTTTGAATGATGGCCACTTTGTGTCTATAAA...TGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000568408.5
CDS-3UTR CCA 90 bp CACAAAGTGGCCATCATTCAAAATCGCATCCCATACCCAACAGTTGAGACAATTGAGAGACATAGACACTaGGGGTATTTGTTTGCAGGT +
Preference number: 4 (lower is better)
Translates to: HKVAIIQNRIPYPTVETIERHRH*GYLFAG
Trigger: ACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC...AATTGTCTCAACTGTTGGGTATGGGATGCGATTTTGAATGATGGCCACTTTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000568408.5
CDS-3UTR CCA 90 bp CCGAGAGGTTGGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTGAGTACTCCTCTTGGTTaGGGTTTCATATTGCTCTTG +
Preference number: 4 (lower is better)
Translates to: PRGWHFGPCLFNKFPSAVSTPLG*GFILLL
Trigger: CAAGAGCAATATGAAACCCCAACCAAGAGGAGTACT...CACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCTCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR TCA 90 bp CACAAAGTGGCCATCATTCAAAATCGCATCCCATACCCAACAGTTGAGACAATTTTACCAGTACCAGACTaGGATTGGGCAATTAAGTTC +
Preference number: 4 (lower is better)
Translates to: HKVAIIQNRIPYPTVETILPVPD*DWAIKF
Trigger: GAACTTAATTGCCCAATCTCAGTCTGGTACTGGTAA...AATTGTCTCAACTGTTGGGTATGGGATGCGATTTTGAATGATGGCCACTTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000568408.5
CDS-3UTR TCA 90 bp ACTGCAGAGTACTCCTCTTGGTTGGGGTTTCATATTGCTCTTGCAATTCAGTTTGCATCTAGATTAGCATaGAGGAAACACTGGCCAAAT +
Preference number: 4 (lower is better)
Translates to: TAEYSSWLGFHIALAIQFASRLA*RKHWPN
Trigger: ATTTGGCCAGTGTTTCCTTCATGCTAATCTAGATGC...AAACTGAATTGCAAGAGCAATATGAAACCCCAACCAAGAGGAGTACTCTGCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR TCA 90 bp AGAGGTTGGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTGGGCAACCACAATTTTCACTaGGGATCTAAACCTCAGATC +
Preference number: 4 (lower is better)
Translates to: RGWHFGPCLFNKFPSAVGNHNFH*GSKPQI
Trigger: GATCTGAGGTTTAGATCCTCAGTGAAAATTGTGGTT...GCCCACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR TCA 90 bp TCCATTACTATTGTTTGCTCTGACTATCTTGCGCAAAGATGCCAAGTAAGGCTGATTTGTGACTACTGCTaGTCACATCTAGAACTGCCT +
Preference number: 4 (lower is better)
Translates to: SITIVCSDYLAQRCQVRLICDYC*SHLELP
Trigger: AGGCAGTTCTAGATGTGATCAGCAGTAGTCACAAAT...CAGCCTTACTTGGCATCTTTGCGCAAGATAGTCAGAGCAAACAATAGTAATGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR TCA 90 bp ACAAAGTGGCCATCATTCAAAATCGCATCCCATACCCAACAGTTGAGACAATTCCATTGGCATTGGTCTTaGCAACAGCACCTTTATAGA +
Preference number: 4 (lower is better)
Translates to: TKWPSFKIASHTQQLRQFHWHWS*QQHLYR
Trigger: TCTATAAAGGTGCTGTTGTCAAGACCAATGCCAATG...GAATTGTCTCAACTGTTGGGTATGGGATGCGATTTTGAATGATGGCCACTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000568408.5
CDS-3UTR GCA 90 bp AGGCAGATCTGGCCTAAATACGGAGATGCGTACAAAGAAGACCTAGGATCACAAATCTCTGTGTATTCATaGCTAATCTTCCAAGGTTGT +
Preference number: 4 (lower is better)
Translates to: RQIWPKYGDAYKEDLGSQISVYS*LIFQGC
Trigger: ACAACCTTGGAAGATTAGGCATGAATACACAGAGAT...TTGTGATCCTAGGTCTTCTTTGTACGCATCTCCGTATTTAGGCCAGATCTGCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR GCA 90 bp CGAGAGGTTGGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTGGGTTGGGGTTTCATATTaGTCTTGCAATTCAGTTTCC +
Preference number: 4 (lower is better)
Translates to: REVGILVHAYLTNSLLLWVGVSY*SCNSVS
Trigger: GGAAACTGAATTGCAAGAGCAATATGAAACCCCAAC...CCACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCTCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CCA 90 bp AGAGGTTGGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTGGGCGAATTGGCAGTCTGTTaGTCTCTTTGTAATGTCAGA +
Preference number: 4 (lower is better)
Translates to: RGWHFGPCLFNKFPSAVGELAVC*SLCNVR
Trigger: TCTGACATTACAAAGAGACCAACAGACTGCCAATTC...GCCCACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CAA 72 bp ACACAAACCCATATACACAACCGAGAGGTTGGCATTTaGGTCCATGCTTATTTAACAAATTCCCTTCTGCTG +
Preference number: 4 (lower is better)
Translates to: TQTHIHNREVGI*VHAYLTNSLLL
Trigger: CAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCTCGGTTGTGTATATGGGTTTGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
3UTR CAA 72 bp TCTATACCAAAGCCAAAGAACTGCAGAGTACTCCTCTaGGTTGGGGTTTCATATTGCTCTTGCAATTCAGTT +
Preference number: 4 (lower is better)
Translates to: SIPKPKNCRVLL*VGVSYCSCNSV
Trigger: AACTGAATTGCAAGAGCAATATGAAACCCCAACCAAGAGGAGTACTCTGCAGTTCTTTGGCTTTGGTATAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR GCA 90 bp GGAGATGCGTACAAAGAAGACCTAGGATCACAATCGTTCTTAGCCATCAAACTCTCCATTACTATTGTTTaGTCTGACTATCTTGCGCAA +
Preference number: 4 (lower is better)
Translates to: GDAYKEDLGSQSFLAIKLSITIV*SDYLAQ
Trigger: TTGCGCAAGATAGTCAGAGCAAACAATAGTAATGGA...GAGTTTGATGGCTAAGAACGATTGTGATCCTAGGTCTTCTTTGTACGCATCTCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR GCA 90 bp TCATTCAAAATCGCATCCCATACCCAACAGTTGAGACAATTCAAATTCTATGACCTGGGGGTATTTGTTTaGAGGTTCTACTTGGCTAAG +
Preference number: 4 (lower is better)
Translates to: SFKIASHTQQLRQFKFYDLGVFV*RFYLAK
Trigger: CTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAG...GTCATAGAATTTGAATTGTCTCAACTGTTGGGTATGGGATGCGATTTTGAATGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000568408.5
CDS-3UTR TCA 90 bp GTTTGTATTCCAAAGGCAGTAAACACAGATGTTCAGAAGCCCTTTATAATCAAGTTACCAGTACCAGACTaGGATTGGGCAATTAAGTTC +
Preference number: 4 (lower is better)
Translates to: VCIPKAVNTDVQKPFIIKLPVPD*DWAIKF
Trigger: GAACTTAATTGCCCAATCTCAGTCTGGTACTGGTAA...CTTGATTATAAAGGGCTTCTGAACATCTGTGTTTACTGCCTTTGGAATACAAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR GCA 90 bp AATGTGGTAGAATTGGCAGTCTGTTGGTCTCTTTGTAATGTCAGATTAAAGAAAGTTTCCTCTCATCTTTaGTGTCATTTCGTGGGTACC +
Preference number: 4 (lower is better)
Translates to: NVVELAVCWSLCNVRLKKVSSHL*CHFVGT
Trigger: GGTACCCACGAAATGACAGCAAAGATGAGAGGAAAC...TTTCTTTAATCTGACATTACAAAGAGACCAACAGACTGCCAATTCTACCACATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS CCA 90 bp GGTCCCAGGCGCGGGTGGGACGCTCGTGCTGGTGGATTCGAGGGATaGCACGAGGGATCGTGGGCTCCGGGGGTTCGCGGCAGGCTCTGC +
Preference number: 5 (lower is better)
Translates to: GPRRGWDARAGGFEG*HEGSWAPGVRGRLC
Trigger: GCAGAGCCTGCCGCGAACCCCCGGAGCCCACGATCCCTCGTGCCATCCCTCGAATCCACCAGCACGAGCGTCCCACCCGCGCCTGGGACC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000288071.11
ENST00000355992.7
ENST00000393657.6
ENST00000562519.5
ENST00000562912.5
ENST00000568008.5
ENST00000568460.5
CDS GCA 90 bp GGATGGCACGAGGGATCGTGGGCTCCGGGGGTTCGCGGCAGGCTCTaGTCCAGCCCCACTACAAGGCTGCAGACCGGAAGCGGCGCGCCA +
Preference number: 5 (lower is better)
Translates to: GWHEGSWAPGVRGRL*SSPTTRLQTGSGAP
Trigger: TGGCGCGCCGCTTCCGGTCTGCAGCCTTGTAGTGGGGCTGGAGCAGAGCCTGCCGCGAACCCCCGGAGCCCACGATCCCTCGTGCCATCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000393657.6
ENST00000562519.5
CDS GCA 90 bp CTCCGGGGGTTCGCGGCAGGCTCTGCTCCAGCCCCACTACAAGGCTaGAGACCGGAAGCGGCGCGCCACAGTGACGTCGGAGGCCACTCC +
Preference number: 5 (lower is better)
Translates to: LRGFAAGSAPAPLQG*RPEAARHSDVGGHS
Trigger: GGAGTGGCCTCCGACGTCACTGTGGCGCGCCGCTTCCGGTCTGCAGCCTTGTAGTGGGGCTGGAGCAGAGCCTGCCGCGAACCCCCGGAG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000562519.5
CDS CCA 90 bp TCGCCCACAGGCAGGGTGATGGGAAACCGCCGCAGGGCGCGATCTTaGACGCGCCCGGCAGCCCCAGCCATCGCGGCTGAGCATGGCAGT +
Preference number: 5 (lower is better)
Translates to: SPTGRVMGNRRRARS*TRPAAPAIAAEHGS
Trigger: ACTGCCATGCTCAGCCGCGATGGCTGGGGCTGCCGGGCGCGTCCAAGATCGCGCCCTGCGGCGGTTTCCCATCACCCTGCCTGTGGGCGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000451014.7
ENST00000563206.5
ENST00000570055.5
CDS GCA 90 bp CCCATGAGTCAGTGGCCATGGTCCCAGGCGCGGGTGGGACGCTCGTaGTGGTGGATTCGAGGGATGGCACGAGGGATCGTGGGCTCCGGG +
Preference number: 5 (lower is better)
Translates to: PMSQWPWSQARVGRS*WWIRGMARGIVGSG
Trigger: CCCGGAGCCCACGATCCCTCGTGCCATCCCTCGAATCCACCAGCACGAGCGTCCCACCCGCGCCTGGGACCATGGCCACTGACTCATGGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENST00000288071.11
ENST00000355992.7
ENST00000393657.6
ENST00000562519.5
ENST00000562912.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS CCA 90 bp AGTCAGTGGCCATGGTCCCAGGCGCGGGTGGGACGCTCGTGCTGGTaGATTCGAGGGATGGCACGAGGGATCGTGGGCTCCGGGGGTTCG +
Preference number: 5 (lower is better)
Translates to: SQWPWSQARVGRSCW*IRGMARGIVGSGGS
Trigger: CGAACCCCCGGAGCCCACGATCCCTCGTGCCATCCCTCGAATCCACCAGCACGAGCGTCCCACCCGCGCCTGGGACCATGGCCACTGACT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENST00000288071.11
ENST00000355992.7
ENST00000393657.6
ENST00000562519.5
ENST00000562912.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS CCA 90 bp ATGAGTCAGTGGCCATGGTCCCAGGCGCGGGTGGGACGCTCGTGCTaGTGGATTCGAGGGATGGCACGAGGGATCGTGGGCTCCGGGGGT +
Preference number: 5 (lower is better)
Translates to: MSQWPWSQARVGRSC*WIRGMARGIVGSGG
Trigger: ACCCCCGGAGCCCACGATCCCTCGTGCCATCCCTCGAATCCACCAGCACGAGCGTCCCACCCGCGCCTGGGACCATGGCCACTGACTCAT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENST00000288071.11
ENST00000355992.7
ENST00000393657.6
ENST00000562519.5
ENST00000562912.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS TCA 90 bp CAGGGCGCGATCTTGGACGCGCCCGGCAGCCCCAGCCATCGCGGCTaGGCATGGCAGTTACACTCCAACAACCGCTGCTCTTGGCACTGG +
Preference number: 5 (lower is better)
Translates to: QGAILDAPGSPSHRG*AWQLHSNNRCSWHW
Trigger: CCAGTGCCAAGAGCAGCGGTTGTTGGAGTGTAACTGCCATGCTCAGCCGCGATGGCTGGGGCTGCCGGGCGCGTCCAAGATCGCGCCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000563206.5
ENST00000570055.5
CDS TCA 90 bp TCTGGCTTCTACCCTCGCAGATACTCACGTCGCCCACAGGCAGGGTaGTGGGAAACCGCCGCAGGGCGCGATCTTGGACGCGCCCGGCAG +
Preference number: 5 (lower is better)
Translates to: SGFYPRRYSRRPQAG*WETAAGRDLGRARQ
Trigger: CTGCCGGGCGCGTCCAAGATCGCGCCCTGCGGCGGTTTCCCATCACCCTGCCTGTGGGCGACGTGAGTATCTGCGAGGGTAGAAGCCAGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000568625.5
ENST00000569099.6
CDS-3UTR CAA 90 bp GCACTAGGACAGGGGGCTGGCAATACTCAGATGAGCTGTCCCACCCCCAAGTCCAGACACTGGGGGTATTaGTTTGCAGGTTCTACTTGG +
Preference number: 5 (lower is better)
Translates to: ALGQGAGNTQMSCPTPKSRHWGY*FAGSTW
Trigger: CCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCT...GGACTTGGGGGTGGGACAGCTCATCTGAGTATTGCCAGCCCCCTGTCCTAGTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp CCAAGCCAGAGAACAAGCAGAGGCTGCCACAGGAGATCCTGGGCAAGTAATCAGGTTTGCAGGTTCTACTaGGCTAAGCATGGCCAGCAC +
Preference number: 5 (lower is better)
Translates to: PSQRTSRGCHRRSWASNQVCRFY*AKHGQH
Trigger: GTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAAC...CTGATTACTTGCCCAGGATCTCCTGTGGCAGCCTCTGCTTGTTCTCTGGCTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288071.11
ENST00000562519.5
CDS-3UTR CAA 90 bp GGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGCGGGCGAGCTCATACGTaGGGGAGAGACATAGACACT +
Preference number: 5 (lower is better)
Translates to: GVFVCRFYLAKHGQHEGSGRAHT*GRDIDT
Trigger: AGTGTCTATGTCTCTCCCCAACGTATGAGCTCGCCC...GCTGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CAA 90 bp GGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGCGTTTGCAGGTTCTACTaGGCTAAGCATGGCCAGCAC +
Preference number: 5 (lower is better)
Translates to: GVFVCRFYLAKHGQHEGSVCRFY*AKHGQH
Trigger: GTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAAC...GCTGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CAA 90 bp TGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGGGCGAGCTCATACGTaGGGGAGAGACATAGACACT +
Preference number: 5 (lower is better)
Translates to: WGYLFAGSTWLSMASTKAGRAHT*GRDIDT
Trigger: AGTGTCTATGTCTCTCCCCAACGTATGAGCTCGCCC...TGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CAA 90 bp TATTCCATTACTTCCACAGGAGCTGGAGGCTGCCCCATCCACTCCAAGCCAGAGTTCTCTGCATTGGCATaGGTCTTGACAACAGCACCA +
Preference number: 5 (lower is better)
Translates to: YSITSTGAGGCPIHSKPEFSALA*VLTTAP
Trigger: TGGTGCTGTTGTCAAGACCAATGCCAATGCAGAGAA...CTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGTAATGGAATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp TATTCCATTACTTCCACAGGAGCTGGAGGCTGCCCCATCCACTCCAAGCCAGAGTGCAGAGTACTCCTCTaGGTTGGGGTTTCATATTGC +
Preference number: 5 (lower is better)
Translates to: YSITSTGAGGCPIHSKPECRVLL*VGVSYC
Trigger: GCAATATGAAACCCCAACCAAGAGGAGTACTCTGCA...CTCTGGCTTGGAGTGGATGGGGCAGCCTCCAGCTCCTGTGGAAGTAATGGAATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp TGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGCATTGGCATTGGTCTaGACAACAGCACCGACTCAG +
Preference number: 5 (lower is better)
Translates to: WGYLFAGSTWLSMASTKAALALV*TTAPTQ
Trigger: CTGAGTCGGTGCTGTTGTCAAGACCAATGCCAATGC...TGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000568460.5
CDS-3UTR CAA 90 bp GGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGCAGACACTGGGGGTATTaGTTTGCAGGTTCTACTTGG +
Preference number: 5 (lower is better)
Translates to: GVFVCRFYLAKHGQHEGSRHWGY*FAGSTW
Trigger: CCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCT...GCTGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CAA 90 bp GGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCAGCTCTGTCTTCTCTGCATaGGCATTGGTCTTGACAACA +
Preference number: 5 (lower is better)
Translates to: GVFVCRFYLAKHGQHEGSSVFSA*ALVLTT
Trigger: TGTTGTCAAGACCAATGCCAATGCAGAGAAGACAGA...GCTGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CAA 90 bp GAGAGACATAGACACTGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGGGCGAGCTCATACGTaGGGGAGAGACATAGACACT +
Preference number: 5 (lower is better)
Translates to: ERHRHWGYLFAGSTWLSMGRAHT*GRDIDT
Trigger: AGTGTCTATGTCTCTCCCCAACGTATGAGCTCGCCC...CATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CAA 90 bp CCCAGGAGGCAGATCTGGCCTAAATACGGAGATGCGTACAAAGAAGACCTAGGAGCCTTGGTGATACTCTaGCCTTGGACAGATAAATGG +
Preference number: 5 (lower is better)
Translates to: PRRQIWPKYGDAYKEDLGALVIL*PWTDKW
Trigger: CCATTTATCTGTCCAAGGCAAGAGTATCACCAAGGC...TCCTAGGTCTTCTTTGTACGCATCTCCGTATTTAGGCCAGATCTGCCTCCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp CCAAGCCAGAGAACAAGCAGAGGCTGCCACAGGAGATCCTGGGCAAGTAATCAGGGTTGGGGTTTCATATaGCTCTTGCAATTCAGTTTC +
Preference number: 5 (lower is better)
Translates to: PSQRTSRGCHRRSWASNQGWGFI*LLQFSF
Trigger: GAAACTGAATTGCAAGAGCAATATGAAACCCCAACC...CTGATTACTTGCCCAGGATCTCCTGTGGCAGCCTCTGCTTGTTCTCTGGCTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp TGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGCCAGCACGAAGGCATCTGTCTTCTCTGCATaGGCATTGGTCTTGACAACA +
Preference number: 5 (lower is better)
Translates to: WGYLFAGSTWLSMASTKASVFSA*ALVLTT
Trigger: TGTTGTCAAGACCAATGCCAATGCAGAGAAGACAGA...TGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CAA 90 bp GAGAGACATAGACACTGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGGTTTGCAGGTTCTACTaGGCTAAGCATGGCCAGCAC +
Preference number: 5 (lower is better)
Translates to: ERHRHWGYLFAGSTWLSMVCRFY*AKHGQH
Trigger: GTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAAC...CATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CAA 90 bp TTCCTCTCATCTTTGCTGTCATTTCGTGGGTACCAACAGCCTTGGCCAGGTGTGGAGTACTCCTCTTGGTaGGGGTTTCATATTGCTCTT +
Preference number: 5 (lower is better)
Translates to: FLSSLLSFRGYQQPWPGVEYSSW*GFHIAL
Trigger: AAGAGCAATATGAAACCCCAACCAAGAGGAGTACTC...CACACCTGGCCAAGGCTGTTGGTACCCACGAAATGACAGCAAAGATGAGAGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp ACTGCAGAGTACTCCTCTTGGTTGGGGTTTCATATTGCTCTTGCAATTCAGTTTGGGCGAGCTCATACGTaGGGGAGAGACATAGACACT +
Preference number: 5 (lower is better)
Translates to: TAEYSSWLGFHIALAIQFGRAHT*GRDIDT
Trigger: AGTGTCTATGTCTCTCCCCAACGTATGAGCTCGCCC...AAACTGAATTGCAAGAGCAATATGAAACCCCAACCAAGAGGAGTACTCTGCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp ACAAAGTGGCCATCATTCAAAATCGCATCCCATACCCAACAGTTGAGACAATTCGGGCGAGCTCATACGTaGGGGAGAGACATAGACACT +
Preference number: 5 (lower is better)
Translates to: TKWPSFKIASHTQQLRQFGRAHT*GRDIDT
Trigger: AGTGTCTATGTCTCTCCCCAACGTATGAGCTCGCCC...GAATTGTCTCAACTGTTGGGTATGGGATGCGATTTTGAATGATGGCCACTTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000568408.5
CDS-3UTR CAA 90 bp CGAGAGGTTGGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTGGACTTCTCCACAGGACTaGCTTAAGCACAGGCACAGG +
Preference number: 5 (lower is better)
Translates to: REVGILVHAYLTNSLLLWTSPQD*LKHRHR
Trigger: CCTGTGCCTGTGCTTAAGCAAGTCCTGTGGAGAAGT...CCACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCTCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp AAGGATGTAAAAGGGATGTTGCAAATGCTCATGAGACCAGGTTTTGTGGCACGCAACCTCAGATCACATTaGTTTGGGGCTACTGTGGGG +
Preference number: 5 (lower is better)
Translates to: KDVKGMLQMLMRPGFVARNLRSH*FGATVG
Trigger: CCCCACAGTAGCCCCAAACAAATGTGATCTGAGGTT...GCGTGCCACAAAACCTGGTCTCATGAGCATTTGCAACATCCCTTTTACATCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp GTGGCCACTCTATACCAAAGCCAAAGAACTGCAGAGTACTCCTCTTGGTTGGGGCTCAGTTGCACCTGTTaGTATTCCAAAGGCAGTAAA +
Preference number: 5 (lower is better)
Translates to: VATLYQSQRTAEYSSWLGLSCTC*YSKGSK
Trigger: TTTACTGCCTTTGGAATACAAACAGGTGCAACTGAG...CCCCAACCAAGAGGAGTACTCTGCAGTTCTTTGGCTTTGGTATAGAGTGGCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp GTGGCCACTCTATACCAAAGCCAAAGAACTGCAGAGTACTCCTCTTGGTTGGGGCAAGATGTGTCAGAGTaGACCAGAAGCATAGAGAAA +
Preference number: 5 (lower is better)
Translates to: VATLYQSQRTAEYSSWLGQDVSE*TRSIEK
Trigger: TTTCTCTATGCTTCTGGTCAACTCTGACACATCTTG...CCCCAACCAAGAGGAGTACTCTGCAGTTCTTTGGCTTTGGTATAGAGTGGCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp GAGAGACATAGACACTGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGTTCTCTGCATTGGCATaGGTCTTGACAACAGCACCG +
Preference number: 5 (lower is better)
Translates to: ERHRHWGYLFAGSTWLSMFSALA*VLTTAP
Trigger: CGGTGCTGTTGTCAAGACCAATGCCAATGCAGAGAA...CATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000568460.5
CDS-3UTR CAA 90 bp CCGAGAGGTTGGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTGTCCTTAAGATGCAAGTaGCTCAACGACTCAGCCGCA +
Preference number: 5 (lower is better)
Translates to: PRGWHFGPCLFNKFPSAVSLRCK*LNDSAA
Trigger: TGCGGCTGAGTCGTTGAGCAACTTGCATCTTAAGGA...CACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCTCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp GAGAGACATAGACACTGGGGGTATTTGTTTGCAGGTTCTACTTGGCTAAGCATGAGACACTGGGGGTATTaGTTTGCAGGTTCTACTTGG +
Preference number: 5 (lower is better)
Translates to: ERHRHWGYLFAGSTWLSMRHWGY*FAGSTW
Trigger: CCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCT...CATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000562519.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS-3UTR CAA 90 bp AAGGATGTAAAAGGGATGTTGCAAATGCTCATGAGACCAGGTTTTGTGGCACGCTTTAGTATTTCAGGGTaGGTCCACAGGACTCAGGGA +
Preference number: 5 (lower is better)
Translates to: KDVKGMLQMLMRPGFVARFSISG*VHRTQG
Trigger: TCCCTGAGTCCTGTGGACCAACCCTGAAATACTAAA...GCGTGCCACAAAACCTGGTCTCATGAGCATTTGCAACATCCCTTTTACATCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp CACAAAGTGGCCATCATTCAAAATCGCATCCCATACCCAACAGTTGAGACAATTTCCTTAAGATGCAAGTaGCTCAACGACTCAGCCGCA +
Preference number: 5 (lower is better)
Translates to: HKVAIIQNRIPYPTVETISLRCK*LNDSAA
Trigger: TGCGGCTGAGTCGTTGAGCAACTTGCATCTTAAGGA...AATTGTCTCAACTGTTGGGTATGGGATGCGATTTTGAATGATGGCCACTTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000568408.5
CDS-3UTR CAA 90 bp TCCATTACTATTGTTTGCTCTGACTATCTTGCGCAAAGATGCCAAGTAAGGCTGACATCTAGAACTGCCTaGAGGCTGGCCATGAAGACT +
Preference number: 5 (lower is better)
Translates to: SITIVCSDYLAQRCQVRLTSRTA*RLAMKT
Trigger: AGTCTTCATGGCCAGCCTCAAGGCAGTTCTAGATGT...CAGCCTTACTTGGCATCTTTGCGCAAGATAGTCAGAGCAAACAATAGTAATGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp CCCAGGAGGCAGATCTGGCCTAAATACGGAGATGCGTACAAAGAAGACCTAGGAAAGTGTCCATTACTATaGTTTGCTCTGACTATCTTG +
Preference number: 5 (lower is better)
Translates to: PRRQIWPKYGDAYKEDLGKCPLL*FALTIL
Trigger: CAAGATAGTCAGAGCAAACAATAGTAATGGACACTT...TCCTAGGTCTTCTTTGTACGCATCTCCGTATTTAGGCCAGATCTGCCTCCTGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp TACTCTTGCCTTGGACAGATAAATGGTGGTAGTGTAGCTAGTCCCTCAGTTGCAAGTTTCCTCTCATCTTaGCTGTCATTTCGTGGGTAC +
Preference number: 5 (lower is better)
Translates to: YSCLGQINGGSVASPSVASFLSS*LSFRGY
Trigger: GTACCCACGAAATGACAGCAAAGATGAGAGGAAACT...TGCAACTGAGGGACTAGCTACACTACCACCATTTATCTGTCCAAGGCAAGAGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp AGAGGTTGGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTGGGCGGGAATGTGGTAGAATaGGCAGTCTGTTGGTCTCTT +
Preference number: 5 (lower is better)
Translates to: RGWHFGPCLFNKFPSAVGGNVVE*AVCWSL
Trigger: AAGAGACCAACAGACTGCCAATTCTACCACATTCCC...GCCCACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp ACTGCAGAGTACTCCTCTTGGTTGGGGTTTCATATTGCTCTTGCAATTCAGTTTGCATTGGCATTGGTCTaGACAACAGCACCATTGGTA +
Preference number: 5 (lower is better)
Translates to: TAEYSSWLGFHIALAIQFALALV*TTAPLV
Trigger: TACCAATGGTGCTGTTGTCAAGACCAATGCCAATGC...AAACTGAATTGCAAGAGCAATATGAAACCCCAACCAAGAGGAGTACTCTGCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp CGAGAGGTTGGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTGGTCTGTCTTCTCTGCATaGGCATTGGTCTTGACAACA +
Preference number: 5 (lower is better)
Translates to: REVGILVHAYLTNSLLLWSVFSA*ALVLTT
Trigger: TGTTGTCAAGACCAATGCCAATGCAGAGAAGACAGA...CCACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCTCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp ATCTGTCTTCTCTGCATTGGCATTGGTCTTGACAACAGCACCTTTATAGACACAAGACACTGGGGGTATTaGTTTGCAGGTTCTACTTGG +
Preference number: 5 (lower is better)
Translates to: ICLLCIGIGLDNSTFIDTRHWGY*FAGSTW
Trigger: CCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCT...TGTGTCTATAAAGGTGCTGTTGTCAAGACCAATGCCAATGCAGAGAAGACAGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000568408.5
CDS-3UTR CAA 90 bp TCCATTACTATTGTTTGCTCTGACTATCTTGCGCAAAGATGCCAAGTAAGGCTGTACACAACCGAGAGGTaGGCATTTTGGTCCATGCTT +
Preference number: 5 (lower is better)
Translates to: SITIVCSDYLAQRCQVRLYTTER*AFWSML
Trigger: AAGCATGGACCAAAATGCCAACCTCTCGGTTGTGTA...CAGCCTTACTTGGCATCTTTGCGCAAGATAGTCAGAGCAAACAATAGTAATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp ACAAAGTGGCCATCATTCAAAATCGCATCCCATACCCAACAGTTGAGACAATTCTTCTCTGCATTGGCATaGGTCTTGACAACAGCACCT +
Preference number: 5 (lower is better)
Translates to: TKWPSFKIASHTQQLRQFFSALA*VLTTAP
Trigger: AGGTGCTGTTGTCAAGACCAATGCCAATGCAGAGAA...GAATTGTCTCAACTGTTGGGTATGGGATGCGATTTTGAATGATGGCCACTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000568408.5
CDS-3UTR CAA 90 bp AAGGATGTAAAAGGGATGTTGCAAATGCTCATGAGACCAGGTTTTGTGGCACGCTTGACAACAGCACCATaGGTATCTGGTTTGATTTTC +
Preference number: 5 (lower is better)
Translates to: KDVKGMLQMLMRPGFVARLTTAP*VSGLIF
Trigger: GAAAATCAAACCAGATACCAATGGTGCTGTTGTCAA...GCGTGCCACAAAACCTGGTCTCATGAGCATTTGCAACATCCCTTTTACATCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp GTTTGTATTCCAAAGGCAGTAAACACAGATGTTCAGAAGCCCTTTATAATCAAGGTTTGCAGGTTCTACTaGGCTAAGCATGGCCAGCAC +
Preference number: 5 (lower is better)
Translates to: VCIPKAVNTDVQKPFIIKVCRFY*AKHGQH
Trigger: GTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAAC...CTTGATTATAAAGGGCTTCTGAACATCTGTGTTTACTGCCTTTGGAATACAAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp AGAGGTTGGCATTTTGGTCCATGCTTATTTAACAAATTCCCTTCTGCTGTGGGCGATGTAAAAGGGATGTaGCAAATGCTCATGAGACCA +
Preference number: 5 (lower is better)
Translates to: RGWHFGPCLFNKFPSAVGDVKGM*QMLMRP
Trigger: TGGTCTCATGAGCATTTGCAACATCCCTTTTACATC...GCCCACAGCAGAAGGGAATTTGTTAAATAAGCATGGACCAAAATGCCAACCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp ACTGCAGAGTACTCCTCTTGGTTGGGGTTTCATATTGCTCTTGCAATTCAGTTTGCTGGCCATGAAGACTaGAAACCACAATTTTCACTG +
Preference number: 5 (lower is better)
Translates to: TAEYSSWLGFHIALAIQFAGHED*KPQFSL
Trigger: CAGTGAAAATTGTGGTTTCAAGTCTTCATGGCCAGC...AAACTGAATTGCAAGAGCAATATGAAACCCCAACCAAGAGGAGTACTCTGCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp AAGGATGTAAAAGGGATGTTGCAAATGCTCATGAGACCAGGTTTTGTGGCACGCGGTTTCATATTGCTCTaGCAATTCAGTTTCCTCTCA +
Preference number: 5 (lower is better)
Translates to: KDVKGMLQMLMRPGFVARGFILL*QFSFLS
Trigger: TGAGAGGAAACTGAATTGCAAGAGCAATATGAAACC...GCGTGCCACAAAACCTGGTCTCATGAGCATTTGCAACATCCCTTTTACATCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS TCA 90 bp ACACAAAGTGGCCATCATTCAAAATCGCATCCCATACCCAACAGTTaGGACAATTCAAATTCTATGACACTAGAAGTTTTTGTAAAGGCC +
Preference number: 5 (lower is better)
Translates to: TQSGHHSKSHPIPNS*DNSNSMTLEVFVKA
Trigger: GGCCTTTACAAAAACTTCTAGTGTCATAGAATTTGAATTGTCTCAACTGTTGGGTATGGGATGCGATTTTGAATGATGGCCACTTTGTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000568408.5
CDS-3UTR CAA 90 bp AATGTGGTAGAATTGGCAGTCTGTTGGTCTCTTTGTAATGTCAGATTAAAGAAACGAGAGGTTGGCATTTaGGTCCATGCTTATTTAACA +
Preference number: 5 (lower is better)
Translates to: NVVELAVCWSLCNVRLKKREVGI*VHAYLT
Trigger: TGTTAAATAAGCATGGACCAAAATGCCAACCTCTCG...TTTCTTTAATCTGACATTACAAAGAGACCAACAGACTGCCAATTCTACCACATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288071.11
CDS-3UTR CAA 90 bp TCATTCAAAATCGCATCCCATACCCAACAGTTGAGACAATTCAAATTCTATGACTCCCATACCCAACAGTaGAGACAATTCAAATTCTAT +
Preference number: 5 (lower is better)
Translates to: SFKIASHTQQLRQFKFYDSHTQQ*RQFKFY
Trigger: ATAGAATTTGAATTGTCTCAACTGTTGGGTATGGGA...GTCATAGAATTTGAATTGTCTCAACTGTTGGGTATGGGATGCGATTTTGAATGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000568408.5
CDS CCA 72 bp GGCAGGGTGATGGGAAACCGCCGCAGGGCGCGATCTTaGACGCGCCCGGCAGCCCCAGCCATCGCGGCTGAG +
Preference number: 6 (lower is better)
Translates to: GRVMGNRRRARS*TRPAAPAIAAE
Trigger: CTCAGCCGCGATGGCTGGGGCTGCCGGGCGCGTCCAAGATCGCGCCCTGCGGCGGTTTCCCATCACCCTGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000451014.7
ENST00000563206.5
ENST00000568625.5
ENST00000569099.6
ENST00000570055.5
CDS CCA 72 bp CGCGGGTGGGACGCTCGTGCTGGTGGATTCGAGGGATaGCACGAGGGATCGTGGGCTCCGGGGGTTCGCGGC +
Preference number: 6 (lower is better)
Translates to: RGWDARAGGFEG*HEGSWAPGVRG
Trigger: GCCGCGAACCCCCGGAGCCCACGATCCCTCGTGCCATCCCTCGAATCCACCAGCACGAGCGTCCCACCCGCG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENST00000288071.11
ENST00000355992.7
ENST00000393657.6
ENST00000562519.5
ENST00000562912.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS GCA 72 bp GAGGGATCGTGGGCTCCGGGGGTTCGCGGCAGGCTCTaGTCCAGCCCCACTACAAGGCTGCAGACCGGAAGC +
Preference number: 6 (lower is better)
Translates to: EGSWAPGVRGRL*SSPTTRLQTGS
Trigger: GCTTCCGGTCTGCAGCCTTGTAGTGGGGCTGGAGCAGAGCCTGCCGCGAACCCCCGGAGCCCACGATCCCTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000393657.6
ENST00000562519.5
ENST00000568008.5
CDS CCA 72 bp CGTGCTGGTGGATTCGAGGGATGGCACGAGGGATCGTaGGCTCCGGGGGTTCGCGGCAGGCTCTGCTCCAGC +
Preference number: 6 (lower is better)
Translates to: RAGGFEGWHEGS*APGVRGRLCSS
Trigger: GCTGGAGCAGAGCCTGCCGCGAACCCCCGGAGCCCACGATCCCTCGTGCCATCCCTCGAATCCACCAGCACG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000288071.11
ENST00000355992.7
ENST00000393657.6
ENST00000562519.5
ENST00000562912.5
ENST00000568008.5
ENST00000568460.5
CDS CCA 72 bp CCATGGTCCCAGGCGCGGGTGGGACGCTCGTGCTGGTaGATTCGAGGGATGGCACGAGGGATCGTGGGCTCC +
Preference number: 6 (lower is better)
Translates to: PWSQARVGRSCW*IRGMARGIVGS
Trigger: GGAGCCCACGATCCCTCGTGCCATCCCTCGAATCCACCAGCACGAGCGTCCCACCCGCGCCTGGGACCATGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENST00000288071.11
ENST00000355992.7
ENST00000393657.6
ENST00000562519.5
ENST00000562912.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS CCA 72 bp TGGCCATGGTCCCAGGCGCGGGTGGGACGCTCGTGCTaGTGGATTCGAGGGATGGCACGAGGGATCGTGGGC +
Preference number: 6 (lower is better)
Translates to: WPWSQARVGRSC*WIRGMARGIVG
Trigger: GCCCACGATCCCTCGTGCCATCCCTCGAATCCACCAGCACGAGCGTCCCACCCGCGCCTGGGACCATGGCCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENST00000288071.11
ENST00000355992.7
ENST00000393657.6
ENST00000562519.5
ENST00000562912.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS GCA 72 bp CAGTGGCCATGGTCCCAGGCGCGGGTGGGACGCTCGTaGTGGTGGATTCGAGGGATGGCACGAGGGATCGTG +
Preference number: 6 (lower is better)
Translates to: QWPWSQARVGRS*WWIRGMARGIV
Trigger: CACGATCCCTCGTGCCATCCCTCGAATCCACCAGCACGAGCGTCCCACCCGCGCCTGGGACCATGGCCACTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENST00000288071.11
ENST00000355992.7
ENST00000393657.6
ENST00000562519.5
ENST00000562912.5
ENST00000568008.5
ENST00000568408.5
ENST00000568460.5
CDS GCA 72 bp TTCGCGGCAGGCTCTGCTCCAGCCCCACTACAAGGCTaGAGACCGGAAGCGGCGCGCCACAGTGACGTCGGA +
Preference number: 6 (lower is better)
Translates to: FAAGSAPAPLQG*RPEAARHSDVG
Trigger: TCCGACGTCACTGTGGCGCGCCGCTTCCGGTCTGCAGCCTTGTAGTGGGGCTGGAGCAGAGCCTGCCGCGAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000562519.5
CDS TCA 72 bp ATCTTGGACGCGCCCGGCAGCCCCAGCCATCGCGGCTaGGCATGGCAGTTACACTCCAACAACCGCTGCTCT +
Preference number: 6 (lower is better)
Translates to: ILDAPGSPSHRG*AWQLHSNNRCS
Trigger: AGAGCAGCGGTTGTTGGAGTGTAACTGCCATGCTCAGCCGCGATGGCTGGGGCTGCCGGGCGCGTCCAAGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000451014.7
ENST00000563206.5
ENST00000570055.5
CDS CAA 90 bp ACAGCACCTCACAGATGGCGGATTCTAGATCACAAGGCTAAGACCTaGGGCCGAAGCCTCGAGAAATATTGTTATTCCTCTACCCAGGAG +
Preference number: 6 (lower is better)
Translates to: TAPHRWRILDHKAKT*GRSLEKYCYSSTQE
Trigger: CTCCTGGGTAGAGGAATAACAATATTTCTCGAGGCTTCGGCCCAAGGTCTTAGCCTTGTGATCTAGAATCCGCCATCTGTGAGGTGCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000568625.5
CDS CAA 90 bp TGCTCAACTCACAGATGGCGGATTCTAGATCACAAGGCTAAGACCTaGGGCCGAAGCCTCGAGAAATATTGTTATTCCTCTACCCAGGAG +
Preference number: 6 (lower is better)
Translates to: CSTHRWRILDHKAKT*GRSLEKYCYSSTQE
Trigger: CTCCTGGGTAGAGGAATAACAATATTTCTCGAGGCTTCGGCCCAAGGTCTTAGCCTTGTGATCTAGAATCCGCCATCTGTGAGTTGAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000569099.6
CDS CAA 90 bp GGTCTCCCCCGGACAAGTGTAACCATGGGCACAATGTCAGACTCTTaGAGGGCTGTGTATCACTCAGCAACTAAAATAAACAACTATAGC +
Preference number: 6 (lower is better)
Translates to: GLPRTSVTMGTMSDS*RAVYHSATKINNYS
Trigger: GCTATAGTTGTTTATTTTAGTTGCTGAGTGATACACAGCCCTCAAAGAGTCTGACATTGTGCCCATGGTTACACTTGTCCGGGGGAGACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000563392.5
CDS CAA 72 bp CACAGATGGCGGATTCTAGATCACAAGGCTAAGACCTaGGGCCGAAGCCTCGAGAAATATTGTTATTCCTCT +
Preference number: 6 (lower is better)
Translates to: HRWRILDHKAKT*GRSLEKYCYSS
Trigger: AGAGGAATAACAATATTTCTCGAGGCTTCGGCCCAAGGTCTTAGCCTTGTGATCTAGAATCCGCCATCTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000568625.5
ENST00000569099.6
CDS CAA 90 bp GACACAAAGTGGCCATCATTCAAAATCGCATCCCATACCCAACAGTaGAGACAATTCAAATTCTATGACACTAGAAGTTTTTGTAAAGGC +
Preference number: 6 (lower is better)
Translates to: DTKWPSFKIASHTQQ*RQFKFYDTRSFCKG
Trigger: GCCTTTACAAAAACTTCTAGTGTCATAGAATTTGAATTGTCTCAACTGTTGGGTATGGGATGCGATTTTGAATGATGGCCACTTTGTGTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000568408.5
CDS TCA 72 bp GGCCATCATTCAAAATCGCATCCCATACCCAACAGTTaGGACAATTCAAATTCTATGACACTAGAAGTTTTT +
Preference number: 6 (lower is better)
Translates to: GHHSKSHPIPNS*DNSNSMTLEVF
Trigger: AAAAACTTCTAGTGTCATAGAATTTGAATTGTCTCAACTGTTGGGTATGGGATGCGATTTTGAATGATGGCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000568408.5
CDS CAA 72 bp TGGCCATCATTCAAAATCGCATCCCATACCCAACAGTaGAGACAATTCAAATTCTATGACACTAGAAGTTTT +
Preference number: 6 (lower is better)
Translates to: WPSFKIASHTQQ*RQFKFYDTRSF
Trigger: AAAACTTCTAGTGTCATAGAATTTGAATTGTCTCAACTGTTGGGTATGGGATGCGATTTTGAATGATGGCCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000568408.5