Pregenerated sensors for DDX18 (Homo sapiens)
Ensembl gene IDs: ENSG00000088205Ensembl transcript IDs: ENST00000461443.1, ENST00000476149.1, ENST00000489933.1
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCGCATGTTCTCACTCACAGGTGGGAAATGAACAATGAGAACACTTaGACACAGGGTGGTGAATATCACACACCGGGGCCTGTCGTGGGG | + |
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Preference number: 5 (lower is better) Translates to: PHVLTHRWEMNNENT*TQGGEYHTPGPVVG Trigger: CCCCACGACAGGCCCCGGTGTGTGATATTCACCACCCTGTGTCCAAGTGTTCTCATTGTTCATTTCCCACCTGTGAGTGAGAACATGCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS TCA 90 bp | AGGCAGGAGATCAGCGATGGCTTCCCAGCAAAGACAGAGGCGAGCTaGAACCAAGCATTCTGGACAAAGTGTGCAAAAGCTGTAGAGCAA | + |
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Preference number: 5 (lower is better) Translates to: RQEISDGFPAKTEAS*NQAFWTKCAKAVEQ Trigger: TTGCTCTACAGCTTTTGCACACTTTGTCCAGAATGCTTGGTTTCAGCTCGCCTCTGTCTTTGCTGGGAAGCCATCGCTGATCTCCTGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS TCA 90 bp | CAGGGTAGAGGAAGCCTATCATCAAGACTATGCCAGAAAGGCCAATaGGGATGTAAATGTCAGGCAGGAGAAGGCCTGATATGCATCCCC | + |
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Preference number: 5 (lower is better) Translates to: QGRGSLSSRLCQKGQ*GCKCQAGEGLICIP Trigger: GGGGATGCATATCAGGCCTTCTCCTGCCTGACATTTACATCCTCATTGGCCTTTCTGGCATAGTCTTGATGATAGGCTTCCTCTACCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS GCA 90 bp | AGCAAAGACAGAGGCGAGCTGAAACCAAGCATTCTGGACAAAGTGTaGAAAAGCTGTAGAGCAATTTCAGGGAACTGCCTGCAGTTACAG | + |
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Preference number: 5 (lower is better) Translates to: SKDRGELKPSILDKV*KSCRAISGNCLQLQ Trigger: CTGTAACTGCAGGCAGTTCCCTGAAATTGCTCTACAGCTTTTGCACACTTTGTCCAGAATGCTTGGTTTCAGCTCGCCTCTGTCTTTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS TCA 90 bp | GGACAGAAAACCAAACACCGCATGTTCTCACTCACAGGTGGGAAATaGACAATGAGAACACTTGGACACAGGGTGGTGAATATCACACAC | + |
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Preference number: 5 (lower is better) Translates to: GQKTKHRMFSLTGGK*TMRTLGHRVVNITH Trigger: GTGTGTGATATTCACCACCCTGTGTCCAAGTGTTCTCATTGTTCATTTCCCACCTGTGAGTGAGAACATGCGGTGTTTGGTTTTCTGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS TCA 90 bp | CTCACTTTAGGACAGGGTAGACTTCAAAGGACAGTGATTGCCCAGTaGATCACTACAAACAGAGTGCTGGGACAAGGTTCCTGTTTACTC | + |
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Preference number: 5 (lower is better) Translates to: LTLGQGRLQRTVIAQ*ITTNRVLGQGSCLL Trigger: GAGTAAACAGGAACCTTGTCCCAGCACTCTGTTTGTAGTGATTCACTGGGCAATCACTGTCCTTTGAAGTCTACCCTGTCCTAAAGTGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS GCA 90 bp | TGGACAAAGTGTGCAAAAGCTGTAGAGCAATTTCAGGGAACTGCCTaGAGTTACAGGGTAGAGGAAGCCTATCATCAAGACTATGCCAGA | + |
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Preference number: 5 (lower is better) Translates to: WTKCAKAVEQFQGTA*SYRVEEAYHQDYAR Trigger: TCTGGCATAGTCTTGATGATAGGCTTCCTCTACCCTGTAACTGCAGGCAGTTCCCTGAAATTGCTCTACAGCTTTTGCACACTTTGTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS TCA 90 bp | TTAAGATTAGTAAACCAGGATGATCAGCATTCCGATACTGGGTACTaGAGACAGGGAAGGATGAACCGGCCTATGAAATTCCCTCAGGAC | + |
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Preference number: 5 (lower is better) Translates to: LRLVNQDDQHSDTGY*RQGRMNRPMKFPQD Trigger: GTCCTGAGGGAATTTCATAGGCCGGTTCATCCTTCCCTGTCTTCAGTACCCAGTATCGGAATGCTGATCATCCTGGTTTACTAATCTTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS GCA 90 bp | ATTCTGGACAAAGTGTGCAAAAGCTGTAGAGCAATTTCAGGGAACTaGCTGCAGTTACAGGGTAGAGGAAGCCTATCATCAAGACTATGC | + |
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Preference number: 5 (lower is better) Translates to: ILDKVCKSCRAISGN*LQLQGRGSLSSRLC Trigger: GCATAGTCTTGATGATAGGCTTCCTCTACCCTGTAACTGCAGGCAGTTCCCTGAAATTGCTCTACAGCTTTTGCACACTTTGTCCAGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS CCA 90 bp | ATTGCAAGGACAGAAAACCAAACACCGCATGTTCTCACTCACAGGTaGGAAATGAACAATGAGAACACTTGGACACAGGGTGGTGAATAT | + |
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Preference number: 5 (lower is better) Translates to: IARTENQTPHVLTHR*EMNNENTWTQGGEY Trigger: ATATTCACCACCCTGTGTCCAAGTGTTCTCATTGTTCATTTCCCACCTGTGAGTGAGAACATGCGGTGTTTGGTTTTCTGTCCTTGCAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS GCA 90 bp | TCTGCTTTTTCTAGTCTCCCAATGTTGATGGGAAAGTTACATCTTTaGTCTGCTGAGTTAGGCAATCTGCACTTCTTTCTTTCTGAAAGG | + |
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Preference number: 5 (lower is better) Translates to: SAFSSLPMLMGKLHL*SAELGNLHFFLSER Trigger: CCTTTCAGAAAGAAAGAAGTGCAGATTGCCTAACTCAGCAGAGCAAAGATGTAACTTTCCCATCAACATTGGGAGACTAGAAAAAGCAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS CCA 72 bp | CTGTGCTGTGGGAACAAGGAGGCAGGAGATCAGCGATaGCTTCCCAGCAAAGACAGAGGCGAGCTGAAACCA | + |
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Preference number: 6 (lower is better) Translates to: LCCGNKEAGDQR*LPSKDRGELKP Trigger: TGGTTTCAGCTCGCCTCTGTCTTTGCTGGGAAGCCATCGCTGATCTCCTGCCTCCTTGTTCCCACAGCACAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS CCA 72 bp | TGTTGCTGGGTAACAGAGCTAGAAAGCCGAGCCATGTaGGCAGTTCCTTCTGTGCTCACTTCTTGGGCTAGA | + |
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Preference number: 6 (lower is better) Translates to: CCWVTELESRAM*AVPSVLTSWAR Trigger: TCTAGCCCAAGAAGTGAGCACAGAAGGAACTGCCCACATGGCTCGGCTTTCTAGCTCTGTTACCCAGCAACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS CCA 72 bp | CTCACTCACAGGTGGGAAATGAACAATGAGAACACTTaGACACAGGGTGGTGAATATCACACACCGGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: LTHRWEMNNENT*TQGGEYHTPGP Trigger: AGGCCCCGGTGTGTGATATTCACCACCCTGTGTCCAAGTGTTCTCATTGTTCATTTCCCACCTGTGAGTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS TCA 72 bp | ATCAGCGATGGCTTCCCAGCAAAGACAGAGGCGAGCTaGAACCAAGCATTCTGGACAAAGTGTGCAAAAGCT | + |
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Preference number: 6 (lower is better) Translates to: ISDGFPAKTEAS*NQAFWTKCAKA Trigger: AGCTTTTGCACACTTTGTCCAGAATGCTTGGTTTCAGCTCGCCTCTGTCTTTGCTGGGAAGCCATCGCTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS TCA 72 bp | GGACAGGGTAGACTTCAAAGGACAGTGATTGCCCAGTaGATCACTACAAACAGAGTGCTGGGACAAGGTTCC | + |
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Preference number: 6 (lower is better) Translates to: GQGRLQRTVIAQ*ITTNRVLGQGS Trigger: GGAACCTTGTCCCAGCACTCTGTTTGTAGTGATTCACTGGGCAATCACTGTCCTTTGAAGTCTACCCTGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS TCA 72 bp | GGCAAGAATATAAGCCATTTTTCCAGTAAGGCTGACTaGGGAAAGGCAACAGACAGTAGCTCCTGCAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: GKNISHFSSKAD*GKATDSSSCRQ Trigger: CTGCCTGCAGGAGCTACTGTCTGTTGCCTTTCCTCAGTCAGCCTTACTGGAAAAATGGCTTATATTCTTGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS GCA 72 bp | AGAGGCGAGCTGAAACCAAGCATTCTGGACAAAGTGTaGAAAAGCTGTAGAGCAATTTCAGGGAACTGCCTG | + |
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Preference number: 6 (lower is better) Translates to: RGELKPSILDKV*KSCRAISGNCL Trigger: CAGGCAGTTCCCTGAAATTGCTCTACAGCTTTTGCACACTTTGTCCAGAATGCTTGGTTTCAGCTCGCCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS TCA 72 bp | ACCAAACACCGCATGTTCTCACTCACAGGTGGGAAATaGACAATGAGAACACTTGGACACAGGGTGGTGAAT | + |
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Preference number: 6 (lower is better) Translates to: TKHRMFSLTGGK*TMRTLGHRVVN Trigger: ATTCACCACCCTGTGTCCAAGTGTTCTCATTGTTCATTTCCCACCTGTGAGTGAGAACATGCGGTGTTTGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS TCA 72 bp | GTAAACCAGGATGATCAGCATTCCGATACTGGGTACTaGAGACAGGGAAGGATGAACCGGCCTATGAAATTC | + |
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Preference number: 6 (lower is better) Translates to: VNQDDQHSDTGY*RQGRMNRPMKF Trigger: GAATTTCATAGGCCGGTTCATCCTTCCCTGTCTTCAGTACCCAGTATCGGAATGCTGATCATCCTGGTTTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS CAA 90 bp | ACAGCACTGGCCAGACTCGAGACTCCTCTGACACATGTAGAAATGTaGCTTGCTAACAATCCCTACACCAAGAGAAATCTTTCTCCAAGT | + |
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Preference number: 6 (lower is better) Translates to: TALARLETPLTHVEM*LANNPYTKRNLSPS Trigger: ACTTGGAGAAAGATTTCTCTTGGTGTAGGGATTGTTAGCAAGCAACATTTCTACATGTGTCAGAGGAGTCTCGAGTCTGGCCAGTGCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS GCA 72 bp | AAAGTGTGCAAAAGCTGTAGAGCAATTTCAGGGAACTaGCTGCAGTTACAGGGTAGAGGAAGCCTATCATCA | + |
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Preference number: 6 (lower is better) Translates to: KVCKSCRAISGN*LQLQGRGSLSS Trigger: TGATGATAGGCTTCCTCTACCCTGTAACTGCAGGCAGTTCCCTGAAATTGCTCTACAGCTTTTGCACACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS CCA 72 bp | ACAGAAAACCAAACACCGCATGTTCTCACTCACAGGTaGGAAATGAACAATGAGAACACTTGGACACAGGGT | + |
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Preference number: 6 (lower is better) Translates to: TENQTPHVLTHR*EMNNENTWTQG Trigger: ACCCTGTGTCCAAGTGTTCTCATTGTTCATTTCCCACCTGTGAGTGAGAACATGCGGTGTTTGGTTTTCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS TCA 72 bp | ACGATTCCTCAAGGATCTAGACCTAGAAATACCATTTaGCCCGGCCATCCCATTACTGGGTATATACCCAAA | + |
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Preference number: 6 (lower is better) Translates to: TIPQGSRPRNTI*PGHPITGYIPK Trigger: TTTGGGTATATACCCAGTAATGGGATGGCCGGGTCAAATGGTATTTCTAGGTCTAGATCCTTGAGGAATCGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS GCA 72 bp | TGGGCAAGAGGTGGAGGACAGGACCTATGTGAAGACTaGTTAACGTGCCTTATAACTTCTAAAACAGCAAAA | + |
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Preference number: 6 (lower is better) Translates to: WARGGGQDLCED*LTCLITSKTAK Trigger: TTTTGCTGTTTTAGAAGTTATAAGGCACGTTAAGCAGTCTTCACATAGGTCCTGTCCTCCACCTCTTGCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000489933.1 |
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| CDS CAA 72 bp | AAATACTGCAGTCACTGTATAGTAGGGATCTTTACCTaGAATGTGGAATGCAGTTTCCGTCAGGGAACTGGG | + |
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Preference number: 6 (lower is better) Translates to: KYCSHCIVGIFT*NVECSFRQGTG Trigger: CCCAGTTCCCTGACGGAAACTGCATTCCACATTCAAGGTAAAGATCCCTACTATACAGTGACTGCAGTATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000461443.1 |
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| CDS CAA 90 bp | CCCTCAGGACAGAAAGGAAAATCTGCTTTTTCTAGTCTCCCAATGTaGATGGGAAAGTTACATCTTTGCTCTGCTGAGTTAGGCAATCTG | + |
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Preference number: 6 (lower is better) Translates to: PSGQKGKSAFSSLPM*MGKLHLCSAELGNL Trigger: CAGATTGCCTAACTCAGCAGAGCAAAGATGTAACTTTCCCATCAACATTGGGAGACTAGAAAAAGCAGATTTTCCTTTCTGTCCTGAGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS GCA 72 bp | CACTGTATAGTAGGGATCTTTACCTTGAATGTGGAATaGAGTTTCCGTCAGGGAACTGGGAGAATAAGTGAA | + |
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Preference number: 6 (lower is better) Translates to: HCIVGIFTLNVE*SFRQGTGRISE Trigger: TTCACTTATTCTCCCAGTTCCCTGACGGAAACTGCATTCCACATTCAAGGTAAAGATCCCTACTATACAGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000461443.1 |
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| CDS CCA 72 bp | AGGAGATGTGGAGAAACAGGAACACTTTTACACTGTTaGTGGGACTGTAAACTAGTTCATCCATTGTGGAAG | + |
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Preference number: 6 (lower is better) Translates to: RRCGETGTLLHC*WDCKLVHPLWK Trigger: CTTCCACAATGGATGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTGTTTCTCCACATCTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS CCA 72 bp | ATGGCGATCATTAAAAAGTCAGGAAACAACAGGTGCTaGAGGAGATGTGGAGAAACAGGAACACTTTTACAC | + |
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Preference number: 6 (lower is better) Translates to: MAIIKKSGNNRC*RRCGETGTLLH Trigger: GTGTAAAAGTGTTCCTGTTTCTCCACATCTCCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATCGCCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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| CDS CAA 90 bp | ATACCAGAGAAATACTGCAGTCACTGTATAGTAGGGATCTTTACCTaGAATGTGGAATGCAGTTTCCGTCAGGGAACTGGGAGAATAAGT | + |
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Preference number: 6 (lower is better) Translates to: IPEKYCSHCIVGIFT*NVECSFRQGTGRIS Trigger: ACTTATTCTCCCAGTTCCCTGACGGAAACTGCATTCCACATTCAAGGTAAAGATCCCTACTATACAGTGACTGCAGTATTTCTCTGGTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000461443.1 |
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| CDS GCA 72 bp | GGTGGAGGACAGGACCTATGTGAAGACTGCTTAACGTaGCTTATAACTTCTAAAACAGCAAAACTATTATAT | + |
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Preference number: 6 (lower is better) Translates to: GGGQDLCEDCLT*LITSKTAKLLY Trigger: ATATAATAGTTTTGCTGTTTTAGAAGTTATAAGGCACGTTAAGCAGTCTTCACATAGGTCCTGTCCTCCACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000489933.1 |
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| CDS CAA 72 bp | CTTTTGCTGTGCAGAAGCTCTTTAATTAGATCCCATTaGTCAATTTTGGCTAGGACTAATATCCAGAATCTA | + |
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Preference number: 6 (lower is better) Translates to: LLLCRSSLIRSH*SILARTNIQNL Trigger: TAGATTCTGGATATTAGTCCTAGCCAAAATTGACAAATGGGATCTAATTAAAGAGCTTCTGCACAGCAAAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000476149.1 |
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