Pregenerated sensors for CXCL3 (Homo sapiens)
Ensembl gene IDs: ENSG00000163734Ensembl transcript IDs: ENST00000296026.4, ENST00000510390.1, ENST00000511669.1
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | CCACCCTCCAGTTCCCCACCCTGTCATTTATCAAGGTaGCTGACACATTATGGTCTCCCACTAAATATTAGT | + |
|
Preference number: 3 (lower is better) Translates to: PPSSSPPCHLSR*LTHYGLPLNIS Trigger: ACTAATATTTAGTGGGAGACCATAATGTGTCAGCCACCTTGATAAATGACAGGGTGGGGAACTGGAGGGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000296026.4 |
||
| CDS-3UTR GCA 90 bp | CTGTTCTCTTTTTCATTTTCAGCTCTGGTAAGGGCAGGGACCACCCTGCAGGAAGAGCTGGCGGGGAGGTaGCTGCGACCCGGGCTGTGT | + |
|
Preference number: 4 (lower is better) Translates to: LFSFSFSALVRAGTTLQEELAGR*LRPGLC Trigger: ACACAGCCCGGGTCGCAGGCACCTCCCCGCCAGCTC...TTCCTGCAGGGTGGTCCCTGCCCTTACCAGAGCTGAAAATGAAAAAGAGAACAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000296026.4 |
||
| CDS-3UTR GCA 90 bp | CTGTTCTCTTTTTCATTTTCAGCTCTGGTAAGGGCAGGGACCACCCTGCAGGAATCTCCTGTCAGTTGGTaGTCCCCTTGTTCAGTATCT | + |
|
Preference number: 4 (lower is better) Translates to: LFSFSFSALVRAGTTLQESPVSW*SPCSVS Trigger: AGATACTGAACAAGGGGAGCACCAACTGACAGGAGA...TTCCTGCAGGGTGGTCCCTGCCCTTACCAGAGCTGAAAATGAAAAAGAGAACAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000296026.4 |
||
| CDS-3UTR CCA 90 bp | CTGTTCTCTTTTTCATTTTCAGCTCTGGTAAGGGCAGGGACCACCCTGCAGGAATTCTCTCCTGTCAGTTaGTGCTCCCCTTGTTCAGTA | + |
|
Preference number: 4 (lower is better) Translates to: LFSFSFSALVRAGTTLQEFSPVS*CSPCSV Trigger: TACTGAACAAGGGGAGCACCAACTGACAGGAGAGAA...TTCCTGCAGGGTGGTCCCTGCCCTTACCAGAGCTGAAAATGAAAAAGAGAACAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000296026.4 |
||
| CDS-3UTR TCA 90 bp | CTGTTCTCTTTTTCATTTTCAGCTCTGGTAAGGGCAGGGACCACCCTGCAGGAATGCAGGAAGTGTCAATaGTACGCTGATAAGCTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: LFSFSFSALVRAGTTLQECRKCQ*YADKLL Trigger: AAGAAGCTTATCAGCGTATCATTGACACTTCCTGCA...TTCCTGCAGGGTGGTCCCTGCCCTTACCAGAGCTGAAAATGAAAAAGAGAACAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000296026.4 |
||
| CDS-3UTR GCA 90 bp | CTGTTCTCTTTTTCATTTTCAGCTCTGGTAAGGGCAGGGACCACCCTGCAGGAAGGGAAAGAGAAACGCTaGAGAATGGACATTAAACAA | + |
|
Preference number: 4 (lower is better) Translates to: LFSFSFSALVRAGTTLQEGKEKR*RMDIKQ Trigger: TTGTTTAATGTCCATTCTGCAGCGTTTCTCTTTCCC...TTCCTGCAGGGTGGTCCCTGCCCTTACCAGAGCTGAAAATGAAAAAGAGAACAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000296026.4 |
||
| CDS-3UTR CCA 90 bp | CTGTTCTCTTTTTCATTTTCAGCTCTGGTAAGGGCAGGGACCACCCTGCAGGAATGTCATTTATCAAGGTaGCTGACACATTATGGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: LFSFSFSALVRAGTTLQECHLSR*LTHYGL Trigger: GAGACCATAATGTGTCAGCCACCTTGATAAATGACA...TTCCTGCAGGGTGGTCCCTGCCCTTACCAGAGCTGAAAATGAAAAAGAGAACAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000296026.4 |
||
| CDS GCA 90 bp | CCCTGTGATGAGAAAAGGGTTACTGTTGCAGGTGCTAAGGAAGGCTaGTCTTCTGTCACTCTGAAGTTGCTTGGAGGGATGTCCCCATGC | + |
|
Preference number: 5 (lower is better) Translates to: PCDEKRVTVAGAKEG*SSVTLKLLGGMSPC Trigger: GCATGGGGACATCCCTCCAAGCAACTTCAGAGTGACAGAAGAGCAGCCTTCCTTAGCACCTGCAACAGTAACCCTTTTCTCATCACAGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000511669.1 |
||
| CDS-3UTR CAA 90 bp | CTGTTCTCTTTTTCATTTTCAGCTCTGGTAAGGGCAGGGACCACCCTGCAGGAACTTCTCTCCTGTCAGTaGGTGCTCCCCTTGTTCAGT | + |
|
Preference number: 5 (lower is better) Translates to: LFSFSFSALVRAGTTLQELLSCQ*VLPLFS Trigger: ACTGAACAAGGGGAGCACCAACTGACAGGAGAGAAG...TTCCTGCAGGGTGGTCCCTGCCCTTACCAGAGCTGAAAATGAAAAAGAGAACAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000296026.4 |
||
| CDS TCA 90 bp | TTACAGGCCCAAAGTGCCCAAACCAGACATTGCATTTTTCAGGTCTaGAGCCCATTAGGGACTGAGGTAAACGTCCCAAAACAGGCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: LQAQSAQTRHCIFQV*SPLGTEVNVPKQAG Trigger: CCCTGCCTGTTTTGGGACGTTTACCTCAGTCCCTAATGGGCTTCAGACCTGAAAAATGCAATGTCTGGTTTGGGCACTTTGGGCCTGTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000510390.1 ENST00000511669.1 |
||
| CDS GCA 90 bp | GGGATCCTAGCCTTGAACTCACTGAAGGTGTTACTGCAAAGTTTCTaGTCTTCACCAAGAAGGCTTACAGGCCCAAAGTGCCCAAACCAG | + |
|
Preference number: 5 (lower is better) Translates to: GILALNSLKVLLQSF*SSPRRLTGPKCPNQ Trigger: CTGGTTTGGGCACTTTGGGCCTGTAAGCCTTCTTGGTGAAGAGCAGAAACTTTGCAGTAACACCTTCAGTGAGTTCAAGGCTAGGATCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511669.1 |
||
| CDS-3UTR CAA 90 bp | CTGTTCTCTTTTTCATTTTCAGCTCTGGTAAGGGCAGGGACCACCCTGCAGGAACAGTTGGTGCTCCCCTaGTTCAGTATCTTTTCGATG | + |
|
Preference number: 5 (lower is better) Translates to: LFSFSFSALVRAGTTLQEQLVLP*FSIFSM Trigger: CATCGAAAAGATACTGAACAAGGGGAGCACCAACTG...TTCCTGCAGGGTGGTCCCTGCCCTTACCAGAGCTGAAAATGAAAAAGAGAACAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000296026.4 |
||
| CDS-3UTR CAA 90 bp | CTGTTCTCTTTTTCATTTTCAGCTCTGGTAAGGGCAGGGACCACCCTGCAGGAAAGGACTGAGCTATGTTaGATGAAACACACTCACATC | + |
|
Preference number: 5 (lower is better) Translates to: LFSFSFSALVRAGTTLQERTELC*MKHTHI Trigger: GATGTGAGTGTGTTTCATCAAACATAGCTCAGTCCT...TTCCTGCAGGGTGGTCCCTGCCCTTACCAGAGCTGAAAATGAAAAAGAGAACAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000296026.4 |
||
| CDS TCA 72 bp | ACCCTCCCAGGGGTTAGGCCTGGAAATGGAAGACACTaGAATACTGAAATATCCTCTGGCACCAGAGCAGAT | + |
|
Preference number: 6 (lower is better) Translates to: TLPGVRPGNGRH*NTEISSGTRAD Trigger: ATCTGCTCTGGTGCCAGAGGATATTTCAGTATTTCAGTGTCTTCCATTTCCAGGCCTAACCCCTGGGAGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000510390.1 ENST00000511669.1 |
||
| CDS GCA 72 bp | GAGAAAAGGGTTACTGTTGCAGGTGCTAAGGAAGGCTaGTCTTCTGTCACTCTGAAGTTGCTTGGAGGGATG | + |
|
Preference number: 6 (lower is better) Translates to: EKRVTVAGAKEG*SSVTLKLLGGM Trigger: CATCCCTCCAAGCAACTTCAGAGTGACAGAAGAGCAGCCTTCCTTAGCACCTGCAACAGTAACCCTTTTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000511669.1 |
||
| CDS GCA 72 bp | GCCTTGAACTCACTGAAGGTGTTACTGCAAAGTTTCTaGTCTTCACCAAGAAGGCTTACAGGCCCAAAGTGC | + |
|
Preference number: 6 (lower is better) Translates to: ALNSLKVLLQSF*SSPRRLTGPKC Trigger: GCACTTTGGGCCTGTAAGCCTTCTTGGTGAAGAGCAGAAACTTTGCAGTAACACCTTCAGTGAGTTCAAGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000510390.1 ENST00000511669.1 |
||
| CDS TCA 72 bp | CAAAGTGCCCAAACCAGACATTGCATTTTTCAGGTCTaGAGCCCATTAGGGACTGAGGTAAACGTCCCAAAA | + |
|
Preference number: 6 (lower is better) Translates to: QSAQTRHCIFQV*SPLGTEVNVPK Trigger: TTTTGGGACGTTTACCTCAGTCCCTAATGGGCTTCAGACCTGAAAAATGCAATGTCTGGTTTGGGCACTTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000510390.1 ENST00000511669.1 |
||