Pregenerated sensors for CTF1 (Homo sapiens)
Ensembl gene IDs: ENSG00000150281Ensembl transcript IDs: ENST00000279804.3, ENST00000395019.3
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGAGAGACAGCCAGATGGGGACAAGGAGAGAAGGTGTCACCTCCTTaGGATAAGGCTGAGATGTACACATGTGCTCACACAGGGCCACGA | + |
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Preference number: 1 (lower is better) Translates to: RETARWGQGEKVSPP*DKAEMYTCAHTGPR Trigger: TCGTGGCCCTGTGTGAGCACATGTGTACATCTCAGCCTTATCTCAAGGAGGTGACACCTTCTCTCCTTGTCCCCATCTGGCTGTCTCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| 3UTR-3UTR CCA 90 bp | GGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCACTGCACCCCAGCCTaGGCGACAGAGACCCTGCCC | + |
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Preference number: 2 (lower is better) Translates to: GEQENGRLRRSYHADEEGHCTPA*ATETLP Trigger: GGGCAGGGTCTCTGTCGCCCAGGCTGGGGTGCAGTG...ACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| 3UTR-3UTR TCA 90 bp | GTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGAATTGAGCCCAGGAGGTTaGGGCTGCAGTGCTGGGATC | + |
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Preference number: 2 (lower is better) Translates to: VDSDGVTMQTRRVQELRELSPGG*GCSAGI Trigger: GATCCCAGCACTGCAGCCTCAACCTCCTGGGCTCAA...TTCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| 3UTR-3UTR CCA 90 bp | GGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTAGAAGGCCGAGGCAATaGAGACAGCTAAGAGCAGAC | + |
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Preference number: 2 (lower is better) Translates to: GEQENGRLRRSYHADEEGRRPRQ*RQLRAD Trigger: GTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCTTCT...ACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| 3UTR-3UTR CCA 90 bp | GGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGAAGAAGGCCGAGGCAATaGAGACAGCTAAGAGCAGAC | + |
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Preference number: 2 (lower is better) Translates to: GRLRRSYHADEEGPRVKRRRPRQ*RQLRAD Trigger: GTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCTTCT...TCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| 3UTR-3UTR CCA 90 bp | GGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGAAAAGCAAAGAGAGGCTaGGAAAGTGGCTCACGCCTG | + |
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Preference number: 2 (lower is better) Translates to: GRLRRSYHADEEGPRVKRKAKRG*ESGSRL Trigger: CAGGCGTGAGCCACTTTCCCAGCCTCTCTTTGCTTT...TCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| 3UTR TCA 72 bp | GCCAGATGGGGACAAGGAGAGAAGGTGTCACCTCCTTaGGATAAGGCTGAGATGTACACATGTGCTCACACA | + |
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Preference number: 3 (lower is better) Translates to: ARWGQGEKVSPP*DKAEMYTCAHT Trigger: TGTGTGAGCACATGTGTACATCTCAGCCTTATCTCAAGGAGGTGACACCTTCTCTCCTTGTCCCCATCTGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | AGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAGACACCGACAGCGGCAGCGGCGGCGAGAAGCTaGGCAGCCCGAAGGGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: RPRQWRQLRADRQTPTAAAAARS*AARRGL Trigger: GAGACCCCTTCGGGCTGCCCAGCTTCTCGCCGCCGC...TGCCGCTGTCGGTGTCTGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR GCA 90 bp | AGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAGACACCGACAGCGGCACCTCCCTCCGGCTCATaGTGGCCCCTGGCTGATCCC | + |
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Preference number: 4 (lower is better) Translates to: RPRQWRQLRADRQTPTAAPPSGS*WPLADP Trigger: GGGATCAGCCAGGGGCCAGCATGAGCCGGAGGGAGG...TGCCGCTGTCGGTGTCTGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000279804.3 |
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| CDS-3UTR GCA 90 bp | GGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGAAGCCGCAGCCGCTCGTaGACTGGCAGCCCCGCGTGG | + |
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Preference number: 4 (lower is better) Translates to: GRLRRSYHADEEGPRVKRSRSRS*TGSPAW Trigger: CCACGCGGGGCTGCCAGTGCACGAGCGGCTGCGGCT...TCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | GGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGACAGCCGCTCGTGCACTaGCAGCCCCGCGTGGCTCGG | + |
|
Preference number: 4 (lower is better) Translates to: GRLRRSYHADEEGPRVKRQPLVH*QPRVAR Trigger: CCGAGCCACGCGGGGCTGCCAGTGCACGAGCGGCTG...TCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | AGGGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGCAGCCGCTCGTGCACTaGCAGCCCCGCGTGGCTCGG | + |
|
Preference number: 4 (lower is better) Translates to: RESKKMVDSDGVTMQTRRQPLVH*QPRVAR Trigger: CCGAGCCACGCGGGGCTGCCAGTGCACGAGCGGCTG...CCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR TCA 90 bp | AGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAGACACCGACAGCGGCATCAAAGGGACAGGGCTaGGGCCCAAAGGGATGGGGT | + |
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Preference number: 4 (lower is better) Translates to: RPRQWRQLRADRQTPTAASKGQG*GPKGWG Trigger: ACCCCATCCCTTTGGGCCTCAGCCCTGTCCCTTTGA...TGCCGCTGTCGGTGTCTGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR GCA 90 bp | CCACAAAAAGCAAAGAAGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAAGCCGCAGCCGCTCGTaGACTGGCAGCCCCGCGTGG | + |
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Preference number: 4 (lower is better) Translates to: PQKAKKAEAMETAKSRQTSRSRS*TGSPAW Trigger: CCACGCGGGGCTGCCAGTGCACGAGCGGCTGCGGCT...TGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCTTCTTTGCTTTTTGTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR GCA 90 bp | GGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCTGGCGGCGACACACTaGGTCCAGCAGCGGGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: GEQENGRLRRSYHADEEGLAATH*VQQRGQ Trigger: CTGCCCCCGCTGCTGGACGCAGTGTGTCGCCGCCAG...ACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR GCA 90 bp | GGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAGGTCGCCCTCGGTaGGGCTCAGCCACTCGCGGT | + |
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Preference number: 4 (lower is better) Translates to: GEQENGRLRRSYHADEEGPGRPR*GSATRG Trigger: ACCGCGAGTGGCTGAGCCGCACCGAGGGCGACCTGG...ACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | GGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGACCCTCCGGCTCATGCTaGCCCCTGGCTGATCCCGGC | + |
|
Preference number: 4 (lower is better) Translates to: GRLRRSYHADEEGPRVKRPSGSC*PLADPG Trigger: GCCGGGATCAGCCAGGGGCCAGCATGAGCCGGAGGG...TCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000279804.3 |
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| CDS-3UTR TCA 90 bp | AGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAGACACCGACAGCGGCAGCAAGGCTGTGTGTCTaGCGGATCTTGGCCTCCAAG | + |
|
Preference number: 4 (lower is better) Translates to: RPRQWRQLRADRQTPTAAARLCV*RILASK Trigger: CTTGGAGGCCAAGATCCGTCAGACACACAGCCTTGC...TGCCGCTGTCGGTGTCTGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCT 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR TCA 90 bp | AGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAGACACCGACAGCGGCAGCTCAGCGTATTTGGTaGGGAGGTGCGCAAGGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: RPRQWRQLRADRQTPTAAAQRIW*GGAQGC Trigger: ACAGCCTTGCGCACCTCCTCACCAAATACGCTGAGC...TGCCGCTGTCGGTGTCTGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR GCA 90 bp | CCACAAAAAGCAAAGAAGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACACTGGCGGCGACACACTaGGTCCAGCAGCGGGGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: PQKAKKAEAMETAKSRQTLAATH*VQQRGQ Trigger: CTGCCCCCGCTGCTGGACGCAGTGTGTCGCCGCCAG...TGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCTTCTTTGCTTTTTGTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR GCA 90 bp | CCACAAAAAGCAAAGAAGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACACCAGGTCGCCCTCGGTaGGGCTCAGCCACTCGCGGT | + |
|
Preference number: 4 (lower is better) Translates to: PQKAKKAEAMETAKSRQTPGRPR*GSATRG Trigger: ACCGCGAGTGGCTGAGCCGCACCGAGGGCGACCTGG...TGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCTTCTTTGCTTTTTGTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | AGGGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGGGTTCAGCTCGGCCTaGCGGCGACACACTGCGTCC | + |
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Preference number: 4 (lower is better) Translates to: RESKKMVDSDGVTMQTRRGFSSA*RRHTAS Trigger: GGACGCAGTGTGTCGCCGCCAGGCCGAGCTGAACCC...CCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | GGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGAGGGTTCAGCTCGGCCTaGCGGCGACACACTGCGTCC | + |
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Preference number: 4 (lower is better) Translates to: GRLRRSYHADEEGPRVKRGFSSA*RRHTAS Trigger: GGACGCAGTGTGTCGCCGCCAGGCCGAGCTGAACCC...TCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | AGGGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGCACTGCACCCCAGCCTaGGCGACAGAGACCCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: RESKKMVDSDGVTMQTRRHCTPA*ATETLP Trigger: GGGCAGGGTCTCTGTCGCCCAGGCTGGGGTGCAGTG...CCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | AAGCAAAGAAGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAGACACCGCAGCAGGCACGCCCCTaGCCAGGGAAGCACAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: KQRRPRQWRQLRADRQTPQQARP*PGKHRE Trigger: CTCTCTGTGCTTCCCTGGCCAGGGGCGTGCCTGCTG...CGGTGTCTGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCTTCTTTGCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | AGGGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGCTCATGCTGGCCCCTaGCTGATCCCGGCTCCCTTC | + |
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Preference number: 4 (lower is better) Translates to: RESKKMVDSDGVTMQTRRAHAGP*LIPAPF Trigger: GAAGGGAGCCGGGATCAGCCAGGGGCCAGCATGAGC...CCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000279804.3 |
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| CDS-3UTR CCA 90 bp | GTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGAACACTGCACCCCAGCCTaGGCGACAGAGACCCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: VDSDGVTMQTRRVQELREHCTPA*ATETLP Trigger: GGGCAGGGTCTCTGTCGCCCAGGCTGGGGTGCAGTG...TTCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | AGGGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGCAGCAGGCACGCCCCTaGCCAGGGAAGCACAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: RESKKMVDSDGVTMQTRRQQARP*PGKHRE Trigger: CTCTCTGTGCTTCCCTGGCCAGGGGCGTGCCTGCTG...CCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | AGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAGACACCGACAGCGGCAGACTGGGGATGTAGGTaGAGTGAGCCTGAGGAAGGT | + |
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Preference number: 4 (lower is better) Translates to: RPRQWRQLRADRQTPTAADWGCR*SEPEEG Trigger: ACCTTCCTCAGGCTCACTCCACCTACATCCCCAGTC...TGCCGCTGTCGGTGTCTGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR TCA 90 bp | AAGCAAAGAAGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAGACACCGTTGAGCCCAGGAGGTTaGGGCTGCAGTGCTGGGATC | + |
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Preference number: 4 (lower is better) Translates to: KQRRPRQWRQLRADRQTPLSPGG*GCSAGI Trigger: GATCCCAGCACTGCAGCCTCAACCTCCTGGGCTCAA...CGGTGTCTGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCTTCTTTGCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR TCA 90 bp | AAGCAAAGAAGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAGACACCGGAGGCCAAAGGGAACTaGGGCAGGCCCAAGGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: KQRRPRQWRQLRADRQTPEAKGN*GRPKEG Trigger: TCCTTCCTTGGGCCTGCCTCAGTTCCCTTTGGCCTC...CGGTGTCTGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCTTCTTTGCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | AGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAGACACCGACAGCGGCAGTGTCTGACGGATCTTaGCCTCCAAGTGGGGAAGAA | + |
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Preference number: 4 (lower is better) Translates to: RPRQWRQLRADRQTPTAAVSDGS*PPSGEE Trigger: TTCTTCCCCACTTGGAGGCCAAGATCCGTCAGACAC...TGCCGCTGTCGGTGTCTGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR TCA 90 bp | AGGGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGAGGCCAAAGGGAACTaGGGCAGGCCCAAGGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: RESKKMVDSDGVTMQTRREAKGN*GRPKEG Trigger: TCCTTCCTTGGGCCTGCCTCAGTTCCCTTTGGCCTC...CCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR TCA 90 bp | GGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGATCAAAGGGACAGGGCTaGGGCCCAAAGGGATGGGGT | + |
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Preference number: 4 (lower is better) Translates to: GRLRRSYHADEEGPRVKRSKGQG*GPKGWG Trigger: ACCCCATCCCTTTGGGCCTCAGCCCTGTCCCTTTGA...TCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR GCA 90 bp | AGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAGACACCGACAGCGGCATATTCCTGGAGCAGCTaGTCAGCGTATTTGGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: RPRQWRQLRADRQTPTAAYSWSS*SAYLVR Trigger: CCTCACCAAATACGCTGAGCAGCTGCTCCAGGAATA...TGCCGCTGTCGGTGTCTGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR GCA 90 bp | AAGCAAAGAAGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAGACACCGGGGTCTCCCTGGAGCTaGACATATTCCTGGAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: KQRRPRQWRQLRADRQTPGSPWS*TYSWSS Trigger: GCTGCTCCAGGAATATGTGCAGCTCCAGGGAGACCC...CGGTGTCTGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCTTCTTTGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR TCA 90 bp | GGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTGCAAGGCTGTGTGTCTaGCGGATCTTGGCCTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: GEQENGRLRRSYHADEEGARLCV*RILASK Trigger: CTTGGAGGCCAAGATCCGTCAGACACACAGCCTTGC...ACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR TCA 90 bp | GGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTGCTCAGCGTATTTGGTaGGGAGGTGCGCAAGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: GEQENGRLRRSYHADEEGAQRIW*GGAQGC Trigger: ACAGCCTTGCGCACCTCCTCACCAAATACGCTGAGC...ACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR TCA 90 bp | AGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAGACACCGACAGCGGCAAAGGTGTCACCTCCTTaGGATAAGGCTGAGATGTAC | + |
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Preference number: 4 (lower is better) Translates to: RPRQWRQLRADRQTPTAAKVSPP*DKAEMY Trigger: GTACATCTCAGCCTTATCTCAAGGAGGTGACACCTT...TGCCGCTGTCGGTGTCTGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | GGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCGAAGGGGTCTCCCTaGAGCTGCACATATTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: GEQENGRLRRSYHADEEGPKGSP*SCTYSW Trigger: CCAGGAATATGTGCAGCTCCAGGGAGACCCCTTCGG...ACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | AAGCAAAGAAGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAGACACCGAGACACCCCAAGAGCTaGGTAAAGGGGGAGGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: KQRRPRQWRQLRADRQTPRHPKS*VKGEAK Trigger: TTTGGCCTCCCCCTTTACCCAGCTCTTGGGGTGTCT...CGGTGTCTGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCTTCTTTGCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | AAGCAAAGAAGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAGACACCGGACTGGGGATGTAGGTaGAGTGAGCCTGAGGAAGGT | + |
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Preference number: 4 (lower is better) Translates to: KQRRPRQWRQLRADRQTPDWGCR*SEPEEG Trigger: ACCTTCCTCAGGCTCACTCCACCTACATCCCCAGTC...CGGTGTCTGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCTTCTTTGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | GGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTTGGGGTGTGGCAGACTaGGGATGTAGGTGGAGTGAG | + |
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Preference number: 4 (lower is better) Translates to: GEQENGRLRRSYHADEEGWGVAD*GCRWSE Trigger: CTCACTCCACCTACATCCCCAGTCTGCCACACCCCA...ACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | GGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGATGGGGTGTGGCAGACTaGGGATGTAGGTGGAGTGAG | + |
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Preference number: 4 (lower is better) Translates to: GRLRRSYHADEEGPRVKRWGVAD*GCRWSE Trigger: CTCACTCCACCTACATCCCCAGTCTGCCACACCCCA...TCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | AAGCAAAGAAGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAGACACCGCAAAGGGATGGGGTGTaGCAGACTGGGGATGTAGGT | + |
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Preference number: 4 (lower is better) Translates to: KQRRPRQWRQLRADRQTPQRDGV*QTGDVG Trigger: ACCTACATCCCCAGTCTGCCACACCCCATCCCTTTG...CGGTGTCTGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCTTCTTTGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR GCA 90 bp | GTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGAAGGGTCTCCCTGGAGCTaGACATATTCCTGGAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: VDSDGVTMQTRRVQELREGSPWS*TYSWSS Trigger: GCTGCTCCAGGAATATGTGCAGCTCCAGGGAGACCC...TTCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR GCA 90 bp | GGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGACAGACGGAGTTACCATaGAGACGAGGAGGGTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: GRLRRSYHADEEGPRVKRQTELP*RRGGSK Trigger: CTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTG...TCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | GTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGAACCGAAGGGGTCTCCCTaGAGCTGCACATATTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: VDSDGVTMQTRRVQELREPKGSP*SCTYSW Trigger: CCAGGAATATGTGCAGCTCCAGGGAGACCCCTTCGG...TTCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | GGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGAAGACACCCCAAGAGCTaGGTAAAGGGGGAGGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: GRLRRSYHADEEGPRVKRRHPKS*VKGEAK Trigger: TTTGGCCTCCCCCTTTACCCAGCTCTTGGGGTGTCT...TCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | GGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTACTGAGGAATCAGTCTaGGGGTCCAGACTTCCCTCC | + |
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Preference number: 4 (lower is better) Translates to: GEQENGRLRRSYHADEEGTEESV*GSRLPS Trigger: GGAGGGAAGTCTGGACCCCCAGACTGATTCCTCAGT...ACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000395019.3 |
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| CDS-3UTR GCA 90 bp | GTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGAACAGACGGAGTTACCATaGAGACGAGGAGGGTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: VDSDGVTMQTRRVQELREQTELP*RRGGSK Trigger: CTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTG...TTCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | AGGGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGACTGAGGAATCAGTCTaGGGGTCTTCCAGACTTCCC | + |
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Preference number: 4 (lower is better) Translates to: RESKKMVDSDGVTMQTRRTEESV*GSSRLP Trigger: GGGAAGTCTGGAAGACCCCCAGACTGATTCCTCAGT...CCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000279804.3 |
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| CDS-3UTR CCA 90 bp | GGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTAAAGCAAAGAGAGGCTaGGAAAGTGGCTCACGCCTG | + |
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Preference number: 4 (lower is better) Translates to: GEQENGRLRRSYHADEEGKAKRG*ESGSRL Trigger: CAGGCGTGAGCCACTTTCCCAGCCTCTCTTTGCTTT...ACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | GTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGAACAAAGGGATGGGGTGTaGCAGACTGGGGATGTAGGT | + |
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Preference number: 4 (lower is better) Translates to: VDSDGVTMQTRRVQELREQRDGV*QTGDVG Trigger: ACCTACATCCCCAGTCTGCCACACCCCATCCCTTTG...TTCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | GTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGAAGTGTCTGACGGATCTTaGCCTCCAAGTGGGGAAGAA | + |
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Preference number: 4 (lower is better) Translates to: VDSDGVTMQTRRVQELREVSDGS*PPSGEE Trigger: TTCTTCCCCACTTGGAGGCCAAGATCCGTCAGACAC...TTCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | AGGGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGAGCTGCACATATTCCTaGAGCAGCTGCTCAGCGTAT | + |
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Preference number: 4 (lower is better) Translates to: RESKKMVDSDGVTMQTRRSCTYS*SSCSAY Trigger: ATACGCTGAGCAGCTGCTCCAGGAATATGTGCAGCT...CCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | GGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTAGCTGCACATATTCCTaGAGCAGCTGCTCAGCGTAT | + |
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Preference number: 4 (lower is better) Translates to: GEQENGRLRRSYHADEEGSCTYS*SSCSAY Trigger: ATACGCTGAGCAGCTGCTCCAGGAATATGTGCAGCT...ACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CCA 90 bp | CCACAAAAAGCAAAGAAGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAAGAAGGCCGAGGCAATaGAGACAGCTAAGAGCAGAC | + |
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Preference number: 4 (lower is better) Translates to: PQKAKKAEAMETAKSRQTRRPRQ*RQLRAD Trigger: GTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCTTCT...TGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCTTCTTTGCTTTTTGTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR GCA 90 bp | CCACAAAAAGCAAAGAAGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACATATTCCTGGAGCAGCTaGTCAGCGTATTTGGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: PQKAKKAEAMETAKSRQTYSWSS*SAYLVR Trigger: CCTCACCAAATACGCTGAGCAGCTGCTCCAGGAATA...TGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCTTCTTTGCTTTTTGTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR TCA 90 bp | GTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGAAAAGGTGTCACCTCCTTaGGATAAGGCTGAGATGTAC | + |
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Preference number: 4 (lower is better) Translates to: VDSDGVTMQTRRVQELREKVSPP*DKAEMY Trigger: GTACATCTCAGCCTTATCTCAAGGAGGTGACACCTT...TTCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS CCA 90 bp | TCCAGGCGGCGCAGCAGGCGCGGCGCGCGCGGGTTCAGCTCGGCCTaGCGGCGACACACTGCGTCCAGCAGCGGGGGCAGCGCGGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: SRRRSRRGARGFSSA*RRHTASSSGGSAAS Trigger: GCTGGCCGCGCTGCCCCCGCTGCTGGACGCAGTGTGTCGCCGCCAGGCCGAGCTGAACCCGCGCGCGCCGCGCCTGCTGCGCCGCCTGGA 80% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS TCA 90 bp | CCTGGAGCTGCACATATTCCTGGAGCAGCTGCTCAGCGTATTTGGTaGGGAGGTGCGCAAGGCTGTGTGTCTGACGGATCTTGGCCTCCA | + |
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Preference number: 5 (lower is better) Translates to: PGAAHIPGAAAQRIW*GGAQGCVSDGSWPP Trigger: TGGAGGCCAAGATCCGTCAGACACACAGCCTTGCGCACCTCCTCACCAAATACGCTGAGCAGCTGCTCCAGGAATATGTGCAGCTCCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS TCA 90 bp | AGCTGCTCAGCGTATTTGGTGAGGAGGTGCGCAAGGCTGTGTGTCTaGCGGATCTTGGCCTCCAAGTGGGGAAGAAGTGAGACTGAGGAA | + |
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Preference number: 5 (lower is better) Translates to: SCSAYLVRRCARLCV*RILASKWGRSETEE Trigger: TTCCTCAGTCTCACTTCTTCCCCACTTGGAGGCCAAGATCCGTCAGACACACAGCCTTGCGCACCTCCTCACCAAATACGCTGAGCAGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CAA 90 bp | AGGGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGAGCTGCTCAGCGTATTaGGTGAGGAGGTGCGCAAGG | + |
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Preference number: 5 (lower is better) Translates to: RESKKMVDSDGVTMQTRRSCSAY*VRRCAR Trigger: CCTTGCGCACCTCCTCACCAAATACGCTGAGCAGCT...CCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CAA 90 bp | GTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGAAAGCTGCTCAGCGTATTaGGTGAGGAGGTGCGCAAGG | + |
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Preference number: 5 (lower is better) Translates to: VDSDGVTMQTRRVQELRESCSAY*VRRCAR Trigger: CCTTGCGCACCTCCTCACCAAATACGCTGAGCAGCT...TTCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CAA 90 bp | GGAGAGCAAGAAAATGGTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTAAGGTGTTGCTTGTTTaGTCTCCACAGATCTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: GEQENGRLRRSYHADEEGKVLLV*SPQICW Trigger: CCAGCAGATCTGTGGAGACAAAACAAGCAACACCTT...ACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTACCATTTTCTTGCTCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CAA 90 bp | CCACAAAAAGCAAAGAAGGCCGAGGCAATGGAGACAGCTAAGAGCAGACAGACAAAGGTGTTGCTTGTTTaGTCTCCACAGATCTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: PQKAKKAEAMETAKSRQTKVLLV*SPQICW Trigger: CCAGCAGATCTGTGGAGACAAAACAAGCAACACCTT...TGTCTGTCTGCTCTTAGCTGTCTCCATTGCCTCGGCCTTCTTTGCTTTTTGTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS-3UTR CAA 90 bp | GTAGACTCAGACGGAGTTACCATGCAGACGAGGAGGGTCCAAGAGTTAAGAGAAAACTCTTTTAAGGTGTaGCTTGTTTTGTCTCCACAG | + |
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Preference number: 5 (lower is better) Translates to: VDSDGVTMQTRRVQELRENSFKV*LVLSPQ Trigger: CTGTGGAGACAAAACAAGCAACACCTTAAAAGAGTT...TTCTCTTAACTCTTGGACCCTCCTCGTCTGCATGGTAACTCCGTCTGAGTCTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS CCA 72 bp | TCAGGCCGGCCACCGGCAGCCGCGGCGGCGAGAAGCTaGGCAGCCCGAAGGGGTCTCCCTGGAGCTGCACAT | + |
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Preference number: 6 (lower is better) Translates to: SGRPPAAAAARS*AARRGLPGAAH Trigger: ATGTGCAGCTCCAGGGAGACCCCTTCGGGCTGCCCAGCTTCTCGCCGCCGCGGCTGCCGGTGGCCGGCCTGA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS TCA 72 bp | GCGTATTTGGTGAGGAGGTGCGCAAGGCTGTGTGTCTaGCGGATCTTGGCCTCCAAGTGGGGAAGAAGTGAG | + |
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Preference number: 6 (lower is better) Translates to: AYLVRRCARLCV*RILASKWGRSE Trigger: CTCACTTCTTCCCCACTTGGAGGCCAAGATCCGTCAGACACACAGCCTTGCGCACCTCCTCACCAAATACGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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| CDS TCA 72 bp | GCACATATTCCTGGAGCAGCTGCTCAGCGTATTTGGTaGGGAGGTGCGCAAGGCTGTGTGTCTGACGGATCT | + |
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Preference number: 6 (lower is better) Translates to: AHIPGAAAQRIW*GGAQGCVSDGS Trigger: AGATCCGTCAGACACACAGCCTTGCGCACCTCCTCACCAAATACGCTGAGCAGCTGCTCCAGGAATATGTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000279804.3 ENST00000395019.3 |
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