Pregenerated sensors for CSTF3-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000247151Ensembl transcript IDs: ENST00000500025.2, ENST00000531870.5, ENST00000647623.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTGGTCTCCAGTGCGGGTGTGGAGAGAAGAGTTAAAAGAACCCTGTaGAGAGAGTGCCATGCTTGCCCACCTAATACTGGGGAAATCCAA | + |
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Preference number: 5 (lower is better) Translates to: VVSSAGVERRVKRTL*RECHACPPNTGEIQ Trigger: TTGGATTTCCCCAGTATTAGGTGGGCAAGCATGGCACTCTCTCCACAGGGTTCTTTTAACTCTTCTCTCCACACCCGCACTGGAGACCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000647623.1 |
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| CDS TCA 90 bp | AATCAGGCTTCAACTGTGAGTAGCCAGGCTCTAAAGCTTGATAACTaGATTCCAAAAAGCGCGCGAGCCTCCAGGCGAAACAGCTTCCCG | + |
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Preference number: 5 (lower is better) Translates to: NQASTVSSQALKLDN*IPKSARASRRNSFP Trigger: CGGGAAGCTGTTTCGCCTGGAGGCTCGCGCGCTTTTTGGAATTCAGTTATCAAGCTTTAGAGCCTGGCTACTCACAGTTGAAGCCTGATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000500025.2 ENST00000531870.5 |
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| CDS GCA 90 bp | AGTGCGGGTGTGGAGAGAAGAGTTAAAAGAACCCTGTGGAGAGAGTaGCATGCTTGCCCACCTAATACTGGGGAAATCCAAGGCTTGAAC | + |
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Preference number: 5 (lower is better) Translates to: SAGVERRVKRTLWRE*HACPPNTGEIQGLN Trigger: GTTCAAGCCTTGGATTTCCCCAGTATTAGGTGGGCAAGCATGGCACTCTCTCCACAGGGTTCTTTTAACTCTTCTCTCCACACCCGCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000647623.1 |
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| CDS CCA 90 bp | GAAACCCCATCTCTACTGGGTGAGAGTTTAGGTGATGGCCACAGATaGTTACCAGTGGTCTCCAGTGCGGGTGTGGAGAGAAGAGTTAAA | + |
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Preference number: 5 (lower is better) Translates to: ETPSLLGESLGDGHR*LPVVSSAGVERRVK Trigger: TTTAACTCTTCTCTCCACACCCGCACTGGAGACCACTGGTAACCATCTGTGGCCATCACCTAAACTCTCACCCAGTAGAGATGGGGTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500025.2 |
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| CDS TCA 90 bp | GATCTTGATAAACTTTCAGTGAGAGGGGTCAGAAACGGGAAACTCTaGTGCTTACAGAGGCCAGGTGGTGGCTGTAAATGTGTGTGGCAG | + |
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Preference number: 5 (lower is better) Translates to: DLDKLSVRGVRNGKL*CLQRPGGGCKCVWQ Trigger: CTGCCACACACATTTACAGCCACCACCTGGCCTCTGTAAGCATCAGAGTTTCCCGTTTCTGACCCCTCTCACTGAAAGTTTATCAAGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647623.1 |
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| CDS TCA 90 bp | TATTCTTTGCAGATTCTAAGGGGAAGTCAGGCACGTGACGGTGGATaGGTCTCCCACAAAGGATATGTGCATGATAATGGCAGAGACAGC | + |
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Preference number: 5 (lower is better) Translates to: YSLQILRGSQARDGG*VSHKGYVHDNGRDS Trigger: GCTGTCTCTGCCATTATCATGCACATATCCTTTGTGGGAGACTCATCCACCGTCACGTGCCTGACTTCCCCTTAGAATCTGCAAAGAATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647623.1 |
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| CDS GCA 90 bp | GAAGTCAGGCACGTGACGGTGGATGAGTCTCCCACAAAGGATATGTaGATGATAATGGCAGAGACAGCTGGATTACAGGTTCGTCTTAAT | + |
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Preference number: 5 (lower is better) Translates to: EVRHVTVDESPTKDM*MIMAETAGLQVRLN Trigger: ATTAAGACGAACCTGTAATCCAGCTGTCTCTGCCATTATCATGCACATATCCTTTGTGGGAGACTCATCCACCGTCACGTGCCTGACTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647623.1 |
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| CDS CCA 90 bp | TTTGTACAAATCAACCTGGGTGAGAGTTTAGGTGATGGCCACAGATaGTTACCAGTGGTCTCCAGTGCGGGTGTGGAGAGAAGAGTTAAA | + |
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Preference number: 5 (lower is better) Translates to: FVQINLGESLGDGHR*LPVVSSAGVERRVK Trigger: TTTAACTCTTCTCTCCACACCCGCACTGGAGACCACTGGTAACCATCTGTGGCCATCACCTAAACTCTCACCCAGGTTGATTTGTACAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000531870.5 ENST00000647623.1 |
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| CDS GCA 90 bp | GTGGAGAGAAGAGTTAAAAGAACCCTGTGGAGAGAGTGCCATGCTTaGCCACCTAATACTGGGGAAATCCAAGGCTTGAACATACTACTT | + |
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Preference number: 5 (lower is better) Translates to: VERRVKRTLWRECHA*PPNTGEIQGLNILL Trigger: AAGTAGTATGTTCAAGCCTTGGATTTCCCCAGTATTAGGTGGGCAAGCATGGCACTCTCTCCACAGGGTTCTTTTAACTCTTCTCTCCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000647623.1 |
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| CDS TCA 90 bp | CCAGGTAGTACTCTTTTAGTAGCACACACTAGAAATGTATACACATaGTTGGCTGATCTTGATAAACTTTCAGTGAGAGGGGTCAGAAAC | + |
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Preference number: 5 (lower is better) Translates to: PGSTLLVAHTRNVYT*LADLDKLSVRGVRN Trigger: GTTTCTGACCCCTCTCACTGAAAGTTTATCAAGATCAGCCAATCATGTGTATACATTTCTAGTGTGTGCTACTAAAAGAGTACTACCTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000647623.1 |
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| CDS GCA 72 bp | AGTCTCAAATCAAGGCCCTGCAGCCCCAGCTTTGGCTaGAGCTCCAGCTGCATTTCCAGCTCTAGCTCAGGC | + |
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Preference number: 6 (lower is better) Translates to: SLKSRPCSPSFG*SSSCISSSSSG Trigger: GCCTGAGCTAGAGCTGGAAATGCAGCTGGAGCTGCAGCCAAAGCTGGGGCTGCAGGGCCTTGATTTGAGACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000500025.2 ENST00000531870.5 ENST00000647623.1 |
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| CDS TCA 72 bp | GTGGCAGGCGTCTGTGATCCTAGATACTCAGGAGGCTaGGGCAAGAGAATCGCTGGAATTCAGGAGGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: VAGVCDPRYSGG*GKRIAGIQEAE Trigger: CTCTGCCTCCTGAATTCCAGCGATTCTCTTGCCTCAGCCTCCTGAGTATCTAGGATCACAGACGCCTGCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000500025.2 ENST00000647623.1 |
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| CDS CCA 72 bp | TCTCTACTGGGTGAGAGTTTAGGTGATGGCCACAGATaGTTACCAGTGGTCTCCAGTGCGGGTGTGGAGAGA | + |
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Preference number: 6 (lower is better) Translates to: SLLGESLGDGHR*LPVVSSAGVER Trigger: TCTCTCCACACCCGCACTGGAGACCACTGGTAACCATCTGTGGCCATCACCTAAACTCTCACCCAGTAGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000500025.2 |
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| CDS CCA 72 bp | ATCAACCTGGGTGAGAGTTTAGGTGATGGCCACAGATaGTTACCAGTGGTCTCCAGTGCGGGTGTGGAGAGA | + |
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Preference number: 6 (lower is better) Translates to: INLGESLGDGHR*LPVVSSAGVER Trigger: TCTCTCCACACCCGCACTGGAGACCACTGGTAACCATCTGTGGCCATCACCTAAACTCTCACCCAGGTTGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000531870.5 ENST00000647623.1 |
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| CDS CCA 72 bp | CTAAGGAAACTAGGTCAGATCATAACCAGTCTTGGGTaGGATGAGGTTGGGGAGGAACCCCAGGAAACAGAG | + |
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Preference number: 6 (lower is better) Translates to: LRKLGQIITSLG*DEVGEEPQETE Trigger: CTCTGTTTCCTGGGGTTCCTCCCCAACCTCATCCCACCCAAGACTGGTTATGATCTGACCTAGTTTCCTTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000647623.1 |
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| CDS TCA 72 bp | TCAACTGTGAGTAGCCAGGCTCTAAAGCTTGATAACTaGATTCCAAAAAGCGCGCGAGCCTCCAGGCGAAAC | + |
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Preference number: 6 (lower is better) Translates to: STVSSQALKLDN*IPKSARASRRN Trigger: GTTTCGCCTGGAGGCTCGCGCGCTTTTTGGAATTCAGTTATCAAGCTTTAGAGCCTGGCTACTCACAGTTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000500025.2 ENST00000531870.5 |
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| CDS TCA 72 bp | CAGATTCTAAGGGGAAGTCAGGCACGTGACGGTGGATaGGTCTCCCACAAAGGATATGTGCATGATAATGGC | + |
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Preference number: 6 (lower is better) Translates to: QILRGSQARDGG*VSHKGYVHDNG Trigger: GCCATTATCATGCACATATCCTTTGTGGGAGACTCATCCACCGTCACGTGCCTGACTTCCCCTTAGAATCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647623.1 |
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| CDS TCA 72 bp | AAACTTTCAGTGAGAGGGGTCAGAAACGGGAAACTCTaGTGCTTACAGAGGCCAGGTGGTGGCTGTAAATGT | + |
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Preference number: 6 (lower is better) Translates to: KLSVRGVRNGKL*CLQRPGGGCKC Trigger: ACATTTACAGCCACCACCTGGCCTCTGTAAGCATCAGAGTTTCCCGTTTCTGACCCCTCTCACTGAAAGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647623.1 |
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| CDS GCA 72 bp | CACGTGACGGTGGATGAGTCTCCCACAAAGGATATGTaGATGATAATGGCAGAGACAGCTGGATTACAGGTT | + |
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Preference number: 6 (lower is better) Translates to: HVTVDESPTKDM*MIMAETAGLQV Trigger: AACCTGTAATCCAGCTGTCTCTGCCATTATCATGCACATATCCTTTGTGGGAGACTCATCCACCGTCACGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647623.1 |
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| CDS GCA 72 bp | AGAGTTAAAAGAACCCTGTGGAGAGAGTGCCATGCTTaGCCACCTAATACTGGGGAAATCCAAGGCTTGAAC | + |
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Preference number: 6 (lower is better) Translates to: RVKRTLWRECHA*PPNTGEIQGLN Trigger: GTTCAAGCCTTGGATTTCCCCAGTATTAGGTGGGCAAGCATGGCACTCTCTCCACAGGGTTCTTTTAACTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000647623.1 |
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| CDS TCA 72 bp | TTATTCTTTGCAGATTCTAAGGGGAAGTCAGGCACGTaGCGGTGGATGAGTCTCCCACAAAGGATATGTGCA | + |
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Preference number: 6 (lower is better) Translates to: LFFADSKGKSGT*RWMSLPQRICA Trigger: TGCACATATCCTTTGTGGGAGACTCATCCACCGTCACGTGCCTGACTTCCCCTTAGAATCTGCAAAGAATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647623.1 |
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| CDS TCA 72 bp | GTCTGGGTAGCTAAGTGCAGAGTACCAACCTCCTTCTaGCACTATTCAACAGCAGCCTGGGATTTTATCGTT | + |
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Preference number: 6 (lower is better) Translates to: VWVAKCRVPTSF*HYSTAAWDFIV Trigger: AACGATAAAATCCCAGGCTGCTGTTGAATAGTGTCAGAAGGAGGTTGGTACTCTGCACTTAGCTACCCAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647623.1 |
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| CDS CAA 90 bp | AGAGAGTGCCATGCTTGCCCACCTAATACTGGGGAAATCCAAGGCTaGAACATACTACTTCTGAATCCAGGTAGTACTCTTTTAGTAGCA | + |
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Preference number: 6 (lower is better) Translates to: RECHACPPNTGEIQG*NILLLNPGSTLLVA Trigger: TGCTACTAAAAGAGTACTACCTGGATTCAGAAGTAGTATGTTCAAGCCTTGGATTTCCCCAGTATTAGGTGGGCAAGCATGGCACTCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000647623.1 |
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| CDS CAA 72 bp | CATGCTTGCCCACCTAATACTGGGGAAATCCAAGGCTaGAACATACTACTTCTGAATCCAGGTAGTACTCTT | + |
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Preference number: 6 (lower is better) Translates to: HACPPNTGEIQG*NILLLNPGSTL Trigger: AAGAGTACTACCTGGATTCAGAAGTAGTATGTTCAAGCCTTGGATTTCCCCAGTATTAGGTGGGCAAGCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647623.1 |
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