Pregenerated sensors for CPSF3 (Homo sapiens)
Ensembl gene IDs: ENSG00000119203Ensembl transcript IDs: ENST00000238112.8, ENST00000460593.1, ENST00000475482.5, ENST00000489403.1, ENST00000489629.1
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGCCTGGCCCGCAAGCGCGGACCAAAGGCAGGCTGCCGGGGTAGGTaGGAGCGCGGGCGACGGAGGAGGCCAGTCTCCGGTTACCCCTCG | + |
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Preference number: 5 (lower is better) Translates to: SLARKRGPKAGCRGR*ERGRRRRPVSGYPS Trigger: CGAGGGGTAACCGGAGACTGGCCTCCTCCGTCGCCCGCGCTCCCACCTACCCCGGCAGCCTGCCTTTGGTCCGCGCTTGCGGGCCAGGCT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000475482.5 |
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| CDS GCA 90 bp | TCGAGCCTGAGAAGCCTGGCCCGCAAGCGCGGACCAAAGGCAGGCTaGCGGGGTAGGTGGGAGCGCGGGCGACGGAGGAGGCCAGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: SSLRSLARKRGPKAG*RGRWERGRRRRPVS Trigger: GGAGACTGGCCTCCTCCGTCGCCCGCGCTCCCACCTACCCCGGCAGCCTGCCTTTGGTCCGCGCTTGCGGGCCAGGCTTCTCAGGCTCGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000460593.1 ENST00000475482.5 |
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| CDS TCA 90 bp | TATAGCAGGCCCCTTCCGATCAACGGTCCTCCAACCCCTCGAGCCTaGGAAGCCTGGCCCGCAAGCGCGGACCAAAGGCAGGCTGCCGGG | + |
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Preference number: 5 (lower is better) Translates to: YSRPLPINGPPTPRA*EAWPASADQRQAAG Trigger: CCCGGCAGCCTGCCTTTGGTCCGCGCTTGCGGGCCAGGCTTCTCAGGCTCGAGGGGTTGGAGGACCGTTGATCGGAAGGGGCCTGCTATA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000460593.1 ENST00000475482.5 |
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| CDS TCA 90 bp | CCTCCGAGCATGGCAGTGGCCTGGCCAGAGCCACGCCCCAGTCCTTaGAGGAGTCAGAGCCGAATCCAGGGCTCCTTCCGGCCGCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: PPSMAVAWPEPRPSP*RSQSRIQGSFRPLS Trigger: TGACAGCGGCCGGAAGGAGCCCTGGATTCGGCTCTGACTCCTTCAAGGACTGGGGCGTGGCTCTGGCCAGGCCACTGCCATGCTCGGAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000489403.1 |
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| CDS CCA 90 bp | GCCCCTCTCTTTCCTAACAGAGAAGCAGGCCTCCGAGCATGGCAGTaGCCTGGCCAGAGCCACGCCCCAGTCCTTGAAGGAGTCAGAGCC | + |
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Preference number: 5 (lower is better) Translates to: APLFPNREAGLRAWQ*PGQSHAPVLEGVRA Trigger: GGCTCTGACTCCTTCAAGGACTGGGGCGTGGCTCTGGCCAGGCCACTGCCATGCTCGGAGGCCTGCTTCTCTGTTAGGAAAGAGAGGGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000489403.1 |
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| CDS CCA 90 bp | GTTCCAGCCCCTCTCTTTCCTAACAGAGAAGCAGGCCTCCGAGCATaGCAGTGGCCTGGCCAGAGCCACGCCCCAGTCCTTGAAGGAGTC | + |
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Preference number: 5 (lower is better) Translates to: VPAPLFPNREAGLRA*QWPGQSHAPVLEGV Trigger: GACTCCTTCAAGGACTGGGGCGTGGCTCTGGCCAGGCCACTGCCATGCTCGGAGGCCTGCTTCTCTGTTAGGAAAGAGAGGGGCTGGAAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000489403.1 |
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| CDS TCA 90 bp | AGCAGGAATCGCAGACATCCCGAAAGTGTGAGGGCGAAGCGGGGGTaGGGAACAGGTCGCCGGGGTCTTCCTAAATTGGAAGCACAGCCA | + |
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Preference number: 5 (lower is better) Translates to: SRNRRHPESVRAKRG*GTGRRGLPKLEAQP Trigger: TGGCTGTGCTTCCAATTTAGGAAGACCCCGGCGACCTGTTCCTCACCCCCGCTTCGCCCTCACACTTTCGGGATGTCTGCGATTCCTGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000475482.5 |
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| CDS GCA 90 bp | GGCACAGTCTCAGTGAACTGGCGTCAGGGCCTCGTACAGTCTCTGTaGAGCCAGCTCCACCATTTCTCGGAGGGATTCATCGTCTTCACT | + |
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Preference number: 5 (lower is better) Translates to: GTVSVNWRQGLVQSL*SQLHHFSEGFIVFT Trigger: AGTGAAGACGATGAATCCCTCCGAGAAATGGTGGAGCTGGCTGCACAGAGACTGTACGAGGCCCTGACGCCAGTTCACTGAGACTGTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000238112.8 ENST00000460593.1 ENST00000489403.1 |
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| CDS GCA 90 bp | CCTCTCATCCTGTCGGTCATAAGCTTCACCGGCTCCCTCACAGCTTaGCCTGACGCGCAGAGATCCGTGCTTGTGCTAAGTGAAAACGCT | + |
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Preference number: 5 (lower is better) Translates to: PLILSVISFTGSLTA*PDAQRSVLVLSENA Trigger: AGCGTTTTCACTTAGCACAAGCACGGATCTCTGCGCGTCAGGGCAAGCTGTGAGGGAGCCGGTGAAGCTTATGACCGACAGGATGAGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000460593.1 |
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| CDS TCA 90 bp | ATCTCCCCTTCAGCAGCATTCCCGACTGATGAGGATCGTGTCCACTaGAAGGCCACTCTCCTTATGGACAGTCGAGGGCTGAGTTTTTGT | + |
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Preference number: 5 (lower is better) Translates to: ISPSAAFPTDEDRVH*KATLLMDSRGLSFC Trigger: ACAAAAACTCAGCCCTCGACTGTCCATAAGGAGAGTGGCCTTTCAGTGGACACGATCCTCATCAGTCGGGAATGCTGCTGAAGGGGAGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000460593.1 |
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| CDS TCA 90 bp | GAATCAAGAGCAGCTCCTGAGCCCTTCCAAGAGCAAAGACAGGAATaGGACCCCTGCCTCCTCTGTTTACAATATCGTGGACAGTGTTAC | + |
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Preference number: 5 (lower is better) Translates to: ESRAAPEPFQEQRQE*DPCLLCLQYRGQCY Trigger: GTAACACTGTCCACGATATTGTAAACAGAGGAGGCAGGGGTCTCATTCCTGTCTTTGCTCTTGGAAGGGCTCAGGAGCTGCTCTTGATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000460593.1 |
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| CDS TCA 90 bp | ATCGTGTCCACTGAAAGGCCACTCTCCTTATGGACAGTCGAGGGCTaGGTTTTTGTCCCTAACACCTCTGCACTTTCTCTTCTCCAGCTT | + |
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Preference number: 5 (lower is better) Translates to: IVSTERPLSLWTVEG*VFVPNTSALSLLQL Trigger: AAGCTGGAGAAGAGAAAGTGCAGAGGTGTTAGGGACAAAAACTCAGCCCTCGACTGTCCATAAGGAGAGTGGCCTTTCAGTGGACACGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000460593.1 |
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| CDS TCA 90 bp | AGAAATCACCAGTGTACAAAAGCTTCACGCCTGCGATCTCAATCATaGACATGGCGGCTCCTAGGACGTGACCTGCATGGTAACACCAAA | + |
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Preference number: 5 (lower is better) Translates to: RNHQCTKASRLRSQS*TWRLLGRDLHGNTK Trigger: TTTGGTGTTACCATGCAGGTCACGTCCTAGGAGCCGCCATGTTCATGATTGAGATCGCAGGCGTGAAGCTTTTGTACACTGGTGATTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000460593.1 |
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| CDS CCA 90 bp | CAATTTCTGCAGCTGGTAACAGAGCAAATTAAAGGGACCAGTATATaGAATGGCTTGGGTCTGCTTCACCGTGCTCATGGCCAGGTCAGT | + |
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Preference number: 5 (lower is better) Translates to: QFLQLVTEQIKGTSI*NGLGLLHRAHGQVS Trigger: ACTGACCTGGCCATGAGCACGGTGAAGCAGACCCAAGCCATTCCATATACTGGTCCCTTTAATTTGCTCTGTTACCAGCTGCAGAAATTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000460593.1 |
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| CDS CCA 90 bp | GCAAAGACAGGAATGAGACCCCTGCCTCCTCTGTTTACAATATCGTaGACAGTGTTACAGAATCTTGCTTCTCGCTCTTCACGTTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: AKTGMRPLPPLFTIS*TVLQNLASRSSRFS Trigger: TGAGAAACGTGAAGAGCGAGAAGCAAGATTCTGTAACACTGTCCACGATATTGTAAACAGAGGAGGCAGGGGTCTCATTCCTGTCTTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000460593.1 |
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| CDS GCA 90 bp | CCTGCCTCCTCTGTTTACAATATCGTGGACAGTGTTACAGAATCTTaGTTCTCGCTCTTCACGTTTCTCATGGATATGGGTCCCATAAGT | + |
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Preference number: 5 (lower is better) Translates to: PASSVYNIVDSVTES*FSLFTFLMDMGPIS Trigger: ACTTATGGGACCCATATCCATGAGAAACGTGAAGAGCGAGAAGCAAGATTCTGTAACACTGTCCACGATATTGTAAACAGAGGAGGCAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000460593.1 |
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| CDS TCA 90 bp | ACTTTCTCTTCTCCAGCTTTACACCTTCCTTATTCTACTAGGGCCTaGGCTGAGAAGATCGAAACTCACGGCAAGTCCCTAATATTTTCT | + |
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Preference number: 5 (lower is better) Translates to: TFSSPALHLPYSTRA*AEKIETHGKSLIFS Trigger: AGAAAATATTAGGGACTTGCCGTGAGTTTCGATCTTCTCAGCTCAGGCCCTAGTAGAATAAGGAAGGTGTAAAGCTGGAGAAGAGAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000460593.1 |
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| CDS CCA 90 bp | CTTCATCGTTATCTTCATATTCTCGAATCAGTGCTGCTTTCAATCTaGCCATTTCATTCTGTTCTCCATGGACTAAAATCACATGAGGCG | + |
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Preference number: 5 (lower is better) Translates to: LHRYLHILESVLLSI*PFHSVLHGLKSHEA Trigger: CGCCTCATGTGATTTTAGTCCATGGAGAACAGAATGAAATGGCCAGATTGAAAGCAGCACTGATTCGAGAATATGAAGATAACGATGAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000238112.8 ENST00000460593.1 ENST00000489629.1 |
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| CDS GCA 90 bp | TTGTGCCAACTAGTATCTAACAATAAACATGTTGTGGGTTCGAAATaGTCATCTGTAGGAATTCAAGTTCTCTACATTTGCATCTCCCCT | + |
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Preference number: 5 (lower is better) Translates to: LCQLVSNNKHVVGSK*SSVGIQVLYICISP Trigger: AGGGGAGATGCAAATGTAGAGAACTTGAATTCCTACAGATGAGCATTTCGAACCCACAACATGTTTATTGTTAGATACTAGTTGGCACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000460593.1 |
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| CDS CCA 90 bp | CATTCATGGCATTTACATATGTCTGGTACACTGCCATACACTTCTTaGCCAAAGATGATGCATAGTATATTGGAATGTCATGTAGTTCTG | + |
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Preference number: 5 (lower is better) Translates to: HSWHLHMSGTLPYTS*PKMMHSILECHVVL Trigger: CAGAACTACATGACATTCCAATATACTATGCATCATCTTTGGCCAAGAAGTGTATGGCAGTGTACCAGACATATGTAAATGCCATGAATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000460593.1 |
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| CDS GCA 72 bp | AGAAGCCTGGCCCGCAAGCGCGGACCAAAGGCAGGCTaGCGGGGTAGGTGGGAGCGCGGGCGACGGAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: RSLARKRGPKAG*RGRWERGRRRR Trigger: CCTCCTCCGTCGCCCGCGCTCCCACCTACCCCGGCAGCCTGCCTTTGGTCCGCGCTTGCGGGCCAGGCTTCT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000460593.1 ENST00000475482.5 |
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| CDS CCA 72 bp | CGCAAGCGCGGACCAAAGGCAGGCTGCCGGGGTAGGTaGGAGCGCGGGCGACGGAGGAGGCCAGTCTCCGGT | + |
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Preference number: 6 (lower is better) Translates to: RKRGPKAGCRGR*ERGRRRRPVSG Trigger: ACCGGAGACTGGCCTCCTCCGTCGCCCGCGCTCCCACCTACCCCGGCAGCCTGCCTTTGGTCCGCGCTTGCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000475482.5 |
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| CDS CAA 90 bp | GCCTCCGAGCATGGCAGTGGCCTGGCCAGAGCCACGCCCCAGTCCTaGAAGGAGTCAGAGCCGAATCCAGGGCTCCTTCCGGCCGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: ASEHGSGLARATPQS*KESEPNPGLLPAAV Trigger: GACAGCGGCCGGAAGGAGCCCTGGATTCGGCTCTGACTCCTTCAAGGACTGGGGCGTGGCTCTGGCCAGGCCACTGCCATGCTCGGAGGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000489403.1 |
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| CDS TCA 72 bp | CCCCTTCCGATCAACGGTCCTCCAACCCCTCGAGCCTaGGAAGCCTGGCCCGCAAGCGCGGACCAAAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: PLPINGPPTPRA*EAWPASADQRQ Trigger: CTGCCTTTGGTCCGCGCTTGCGGGCCAGGCTTCTCAGGCTCGAGGGGTTGGAGGACCGTTGATCGGAAGGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000460593.1 ENST00000475482.5 |
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| CDS TCA 72 bp | ATGGCAGTGGCCTGGCCAGAGCCACGCCCCAGTCCTTaGAGGAGTCAGAGCCGAATCCAGGGCTCCTTCCGG | + |
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Preference number: 6 (lower is better) Translates to: MAVAWPEPRPSP*RSQSRIQGSFR Trigger: CCGGAAGGAGCCCTGGATTCGGCTCTGACTCCTTCAAGGACTGGGGCGTGGCTCTGGCCAGGCCACTGCCAT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000489403.1 |
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| CDS CCA 72 bp | GCCCCTCACAGCCCGTGGCTTCATTCCCTCTCTCGCTaGTCCCTTACAGGGGTCGGATCAGCAGCTGGTCGC | + |
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Preference number: 6 (lower is better) Translates to: APHSPWLHSLSR*SLTGVGSAAGR Trigger: GCGACCAGCTGCTGATCCGACCCCTGTAAGGGACCAGCGAGAGAGGGAATGAAGCCACGGGCTGTGAGGGGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000475482.5 |
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| CDS CAA 72 bp | CATGGCAGTGGCCTGGCCAGAGCCACGCCCCAGTCCTaGAAGGAGTCAGAGCCGAATCCAGGGCTCCTTCCG | + |
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Preference number: 6 (lower is better) Translates to: HGSGLARATPQS*KESEPNPGLLP Trigger: CGGAAGGAGCCCTGGATTCGGCTCTGACTCCTTCAAGGACTGGGGCGTGGCTCTGGCCAGGCCACTGCCATG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000489403.1 |
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| CDS CCA 72 bp | CTCTCGCTGGTCCCTTACAGGGGTCGGATCAGCAGCTaGTCGCTCTCCTCAGCAGGAATCGCAGACATCCCG | + |
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Preference number: 6 (lower is better) Translates to: LSLVPYRGRISS*SLSSAGIADIP Trigger: CGGGATGTCTGCGATTCCTGCTGAGGAGAGCGACCAGCTGCTGATCCGACCCCTGTAAGGGACCAGCGAGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000475482.5 |
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| CDS CCA 72 bp | ACTTCTTGCCCAGCTCCAAGGGGTCGGATCAGCAGCTaGTCGCTCTCCTCAGCAGGAATCGCAGACATCCCG | + |
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Preference number: 6 (lower is better) Translates to: TSCPAPRGRISS*SLSSAGIADIP Trigger: CGGGATGTCTGCGATTCCTGCTGAGGAGAGCGACCAGCTGCTGATCCGACCCCTTGGAGCTGGGCAAGAAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000238112.8 |
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| CDS CCA 72 bp | TTTCCTAACAGAGAAGCAGGCCTCCGAGCATGGCAGTaGCCTGGCCAGAGCCACGCCCCAGTCCTTGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: FPNREAGLRAWQ*PGQSHAPVLEG Trigger: TCCTTCAAGGACTGGGGCGTGGCTCTGGCCAGGCCACTGCCATGCTCGGAGGCCTGCTTCTCTGTTAGGAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000489403.1 |
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| CDS TCA 72 bp | CGCAGACATCCCGAAAGTGTGAGGGCGAAGCGGGGGTaGGGAACAGGTCGCCGGGGTCTTCCTAAATTGGAA | + |
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Preference number: 6 (lower is better) Translates to: RRHPESVRAKRG*GTGRRGLPKLE Trigger: TTCCAATTTAGGAAGACCCCGGCGACCTGTTCCTCACCCCCGCTTCGCCCTCACACTTTCGGGATGTCTGCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000475482.5 |
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| CDS TCA 72 bp | TCAGCAGCATTCCCGACTGATGAGGATCGTGTCCACTaGAAGGCCACTCTCCTTATGGACAGTCGAGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: SAAFPTDEDRVH*KATLLMDSRGL Trigger: CAGCCCTCGACTGTCCATAAGGAGAGTGGCCTTTCAGTGGACACGATCCTCATCAGTCGGGAATGCTGCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000460593.1 |
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| CDS TCA 72 bp | CAGTGTACAAAAGCTTCACGCCTGCGATCTCAATCATaGACATGGCGGCTCCTAGGACGTGACCTGCATGGT | + |
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Preference number: 6 (lower is better) Translates to: QCTKASRLRSQS*TWRLLGRDLHG Trigger: ACCATGCAGGTCACGTCCTAGGAGCCGCCATGTTCATGATTGAGATCGCAGGCGTGAAGCTTTTGTACACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000460593.1 |
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| CDS TCA 72 bp | GCAGCTCCTGAGCCCTTCCAAGAGCAAAGACAGGAATaGGACCCCTGCCTCCTCTGTTTACAATATCGTGGA | + |
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Preference number: 6 (lower is better) Translates to: AAPEPFQEQRQE*DPCLLCLQYRG Trigger: TCCACGATATTGTAAACAGAGGAGGCAGGGGTCTCATTCCTGTCTTTGCTCTTGGAAGGGCTCAGGAGCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000460593.1 |
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| CDS GCA 72 bp | GACCAGTATATGGAATGGCTTGGGTCTGCTTCACCGTaGTCATGGCCAGGTCAGTATAATTGGACAGGTCGC | + |
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Preference number: 6 (lower is better) Translates to: DQYMEWLGSASP*SWPGQYNWTGR Trigger: GCGACCTGTCCAATTATACTGACCTGGCCATGAGCACGGTGAAGCAGACCCAAGCCATTCCATATACTGGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000460593.1 |
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| CDS CCA 72 bp | TATATGGAATGGCTTGGGTCTGCTTCACCGTGCTCATaGCCAGGTCAGTATAATTGGACAGGTCGCAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: YMEWLGSASPCS*PGQYNWTGRKE Trigger: CTCCTTGCGACCTGTCCAATTATACTGACCTGGCCATGAGCACGGTGAAGCAGACCCAAGCCATTCCATATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000460593.1 |
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| CDS CCA 72 bp | TTTCAAAGTTCATATACAGGCACAGTCTCAGTGAACTaGCGTCAGGGCCTCGTACAGTCTCTGTGCAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: FQSSYTGTVSVN*RQGLVQSLCSQ Trigger: CTGGCTGCACAGAGACTGTACGAGGCCCTGACGCCAGTTCACTGAGACTGTGCCTGTATATGAACTTTGAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000238112.8 ENST00000460593.1 ENST00000489403.1 |
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| CDS CAA 90 bp | CCACTGAAAGGCCACTCTCCTTATGGACAGTCGAGGGCTGAGTTTTaGTCCCTAACACCTCTGCACTTTCTCTTCTCCAGCTTTACACCT | + |
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Preference number: 6 (lower is better) Translates to: PLKGHSPYGQSRAEF*SLTPLHFLFSSFTP Trigger: AGGTGTAAAGCTGGAGAAGAGAAAGTGCAGAGGTGTTAGGGACAAAAACTCAGCCCTCGACTGTCCATAAGGAGAGTGGCCTTTCAGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000460593.1 |
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| CDS GCA 72 bp | TTGAACTCGAGAATAATACATGATCTTCCTACTTCTTaGCCAGCTCCAAGGGGTCGGATCAGCAGCTGGTCG | + |
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Preference number: 6 (lower is better) Translates to: LNSRIIHDLPTS*PAPRGRISSWS Trigger: CGACCAGCTGCTGATCCGACCCCTTGGAGCTGGGCAAGAAGTAGGAAGATCATGTATTATTCTCGAGTTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000238112.8 |
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| CDS TCA 72 bp | TCTCCAGCTTTACACCTTCCTTATTCTACTAGGGCCTaGGCTGAGAAGATCGAAACTCACGGCAAGTCCCTA | + |
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Preference number: 6 (lower is better) Translates to: SPALHLPYSTRA*AEKIETHGKSL Trigger: TAGGGACTTGCCGTGAGTTTCGATCTTCTCAGCTCAGGCCCTAGTAGAATAAGGAAGGTGTAAAGCTGGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000460593.1 |
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| CDS TCA 72 bp | ACTGAAAGGCCACTCTCCTTATGGACAGTCGAGGGCTaGGTTTTTGTCCCTAACACCTCTGCACTTTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: TERPLSLWTVEG*VFVPNTSALSL Trigger: AAGAGAAAGTGCAGAGGTGTTAGGGACAAAAACTCAGCCCTCGACTGTCCATAAGGAGAGTGGCCTTTCAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000460593.1 |
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| CDS CAA 90 bp | TTGCGTCTATATCCCCATGTGTGGTGCTTGACACTTGCTCAGTGTTaGCTCATCACAGGAAGACATGACAGGTGTGAACTAAGCAGAAGG | + |
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Preference number: 6 (lower is better) Translates to: LRLYPHVWCLTLAQC*LITGRHDRCELSRR Trigger: CCTTCTGCTTAGTTCACACCTGTCATGTCTTCCTGTGATGAGCAAACACTGAGCAAGTGTCAAGCACCACACATGGGGATATAGACGCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000460593.1 |
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| CDS CAA 90 bp | CCCTGCCTCCTCTGTTTACAATATCGTGGACAGTGTTACAGAATCTaGCTTCTCGCTCTTCACGTTTCTCATGGATATGGGTCCCATAAG | + |
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Preference number: 6 (lower is better) Translates to: PCLLCLQYRGQCYRI*LLALHVSHGYGSHK Trigger: CTTATGGGACCCATATCCATGAGAAACGTGAAGAGCGAGAAGCAAGATTCTGTAACACTGTCCACGATATTGTAAACAGAGGAGGCAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000460593.1 |
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| CDS GCA 72 bp | CACCAGCTTTCAAATAATTCTCTGGATAAGCCACTTTaGATCATGCCTGGGGAGGCCATTACAACACTGGGA | + |
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Preference number: 6 (lower is better) Translates to: HQLSNNSLDKPL*IMPGEAITTLG Trigger: TCCCAGTGTTGTAATGGCCTCCCCAGGCATGATGCAAAGTGGCTTATCCAGAGAATTATTTGAAAGCTGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000238112.8 ENST00000460593.1 ENST00000489629.1 |
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| CDS CCA 72 bp | GGAATGAGACCCCTGCCTCCTCTGTTTACAATATCGTaGACAGTGTTACAGAATCTTGCTTCTCGCTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: GMRPLPPLFTIS*TVLQNLASRSS Trigger: TGAAGAGCGAGAAGCAAGATTCTGTAACACTGTCCACGATATTGTAAACAGAGGAGGCAGGGGTCTCATTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000460593.1 |
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| CDS CCA 72 bp | ACTGTAATTCTCTCCAAAAGAGCGAGAGCAATTAACTaGGCCCTCTGTTGCGTCTATATCCCCATGTGTGGT | + |
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Preference number: 6 (lower is better) Translates to: TVILSKRARAIN*ALCCVYIPMCG Trigger: ACCACACATGGGGATATAGACGCAACAGAGGGCCCAGTTAATTGCTCTCGCTCTTTTGGAGAGAATTACAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000460593.1 |
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| CDS CCA 72 bp | TCCTCTTATCAGTACACCAGCTTTCAAATAATTCTCTaGATAAGCCACTTTGCATCATGCCTGGGGAGGCCA | + |
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Preference number: 6 (lower is better) Translates to: SSYQYTSFQIIL*ISHFASCLGRP Trigger: TGGCCTCCCCAGGCATGATGCAAAGTGGCTTATCCAGAGAATTATTTGAAAGCTGGTGTACTGATAAGAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000238112.8 ENST00000460593.1 ENST00000489629.1 |
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| CDS CAA 72 bp | TCTTCACATTCTACAGTCCGTGTCTCCAAGTTAAGGTaGGCAGTTTTCCCGTCCACTGTGACGCTAAGAATA | + |
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Preference number: 6 (lower is better) Translates to: SSHSTVRVSKLR*AVFPSTVTLRI Trigger: TATTCTTAGCGTCACAGTGGACGGGAAAACTGCCAACCTTAACTTGGAGACACGGACTGTAGAATGTGAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000238112.8 ENST00000460593.1 ENST00000489403.1 |
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| CDS GCA 72 bp | TTTCAAATAATTCTCTGGATAAGCCACTTTGCATCATaGCTGGGGAGGCCATTACAACACTGGGACCAATGT | + |
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Preference number: 6 (lower is better) Translates to: FQIILWISHFAS*LGRPLQHWDQC Trigger: ACATTGGTCCCAGTGTTGTAATGGCCTCCCCAGGCATGATGCAAAGTGGCTTATCCAGAGAATTATTTGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000238112.8 ENST00000460593.1 ENST00000489629.1 |
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| CDS GCA 72 bp | TTGAACTCGAGAATAATACATGATCTTCCTACTTCTTaGCCAGCTCCACCTCCCCTGAAACTGATGAAAAAG | + |
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Preference number: 6 (lower is better) Translates to: LNSRIIHDLPTS*PAPPPLKLMKK Trigger: CTTTTTCATCAGTTTCAGGGGAGGTGGAGCTGGGCAAGAAGTAGGAAGATCATGTATTATTCTCGAGTTCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000475482.5 |
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| CDS CAA 72 bp | AGTATTCCTGAGACCCGCTGGCCTTGTTCTGGTTTTTaGTCTGCTAAAAATCCCATAACCTTGGCTAGTTTT | + |
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Preference number: 6 (lower is better) Translates to: SIPETRWPCSGF*SAKNPITLASF Trigger: AAAACTAGCCAAGGTTATGGGATTTTTAGCAGACAAAAAACCAGAACAAGGCCAGCGGGTCTCAGGAATACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000460593.1 |
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| CDS GCA 72 bp | TCTGTTTACAATATCGTGGACAGTGTTACAGAATCTTaGTTCTCGCTCTTCACGTTTCTCATGGATATGGGT | + |
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Preference number: 6 (lower is better) Translates to: SVYNIVDSVTES*FSLFTFLMDMG Trigger: ACCCATATCCATGAGAAACGTGAAGAGCGAGAAGCAAGATTCTGTAACACTGTCCACGATATTGTAAACAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000460593.1 |
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| CDS GCA 72 bp | TTGAACTCGAGAATAATACATGATCTTCCTACTTCTTaGCCAGCTCCACGCGATGTTCACTCTTCAAGTTTT | + |
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Preference number: 6 (lower is better) Translates to: LNSRIIHDLPTS*PAPRDVHSSSF Trigger: AAAACTTGAAGAGTGAACATCGCGTGGAGCTGGGCAAGAAGTAGGAAGATCATGTATTATTCTCGAGTTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000460593.1 |
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| CDS GCA 72 bp | GTGAACTTCATCGTTATCTTCATATTCTCGAATCAGTaGTGCTTTCAATCTGGCCATTTCATTCTGTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: VNFIVIFIFSNQ*CFQSGHFILFS Trigger: GGAGAACAGAATGAAATGGCCAGATTGAAAGCAGCACTGATTCGAGAATATGAAGATAACGATGAAGTTCAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000238112.8 ENST00000460593.1 ENST00000489629.1 |
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| CDS CCA 72 bp | CATTTACATATGTCTGGTACACTGCCATACACTTCTTaGCCAAAGATGATGCATAGTATATTGGAATGTCAT | + |
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Preference number: 6 (lower is better) Translates to: HLHMSGTLPYTS*PKMMHSILECH Trigger: ATGACATTCCAATATACTATGCATCATCTTTGGCCAAGAAGTGTATGGCAGTGTACCAGACATATGTAAATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000460593.1 |
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| CDS CAA 90 bp | TGTTTGAAAACAAAGGGATTATTGATGTTGATCTGTTTGCGGATTTaGTCATTCATGGCATTTACATATGTCTGGTACACTGCCATACAC | + |
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Preference number: 6 (lower is better) Translates to: CLKTKGLLMLICLRI*SFMAFTYVWYTAIH Trigger: GTGTATGGCAGTGTACCAGACATATGTAAATGCCATGAATGACAAAATCCGCAAACAGATCAACATCAATAATCCCTTTGTTTTCAAACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000460593.1 |
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| CDS CAA 90 bp | TCCATGCTCTTGAGGTTACTAATGTGTTTGAAAACAAAGGGATTATaGATGTTGATCTGTTTGCGGATTTTGTCATTCATGGCATTTACA | + |
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Preference number: 6 (lower is better) Translates to: SMLLRLLMCLKTKGL*MLICLRILSFMAFT Trigger: TGTAAATGCCATGAATGACAAAATCCGCAAACAGATCAACATCAATAATCCCTTTGTTTTCAAACACATTAGTAACCTCAAGAGCATGGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000460593.1 |
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| CDS TCA 72 bp | CACCAAAACTTGATTCCCGCAACTTCCTTAACTTCATaGAAGTTGATAGTTTCAATTTTGTCCATGCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: HQNLIPATSLTS*KLIVSILSMLS Trigger: AGAAAGCATGGACAAAATTGAAACTATCAACTTTCATGAAGTTAAGGAAGTTGCGGGAATCAAGTTTTGGTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000238112.8 ENST00000460593.1 ENST00000475482.5 |
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| CDS CAA 72 bp | ACAAAGGGATTATTGATGTTGATCTGTTTGCGGATTTaGTCATTCATGGCATTTACATATGTCTGGTACACT | + |
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Preference number: 6 (lower is better) Translates to: TKGLLMLICLRI*SFMAFTYVWYT Trigger: AGTGTACCAGACATATGTAAATGCCATGAATGACAAAATCCGCAAACAGATCAACATCAATAATCCCTTTGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000238112.8 ENST00000460593.1 |
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| CDS GCA 72 bp | TACTTTCTACCTTTTGGAAAGCGTATATTCATGTTGTaGCAACTAGTATCTAACAATAAACATGTTGTGGGT | + |
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Preference number: 6 (lower is better) Translates to: YFLPFGKRIFML*QLVSNNKHVVG Trigger: ACCCACAACATGTTTATTGTTAGATACTAGTTGGCACAACATGAATATACGCTTTCCAAAAGGTAGAAAGTA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000460593.1 |
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