Pregenerated sensors for CLEC2B (Homo sapiens)
Ensembl gene IDs: ENSG00000110852Ensembl transcript IDs: ENST00000228438.3, ENST00000538152.1, ENST00000539028.1, ENST00000540743.1
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCTTGCTCTGTCAGGAGGTACTTCATCTTTCCATTTATGTCTTTGTaGACTCCCAGTTTCACATTTTGTTCAATAGGCCATAATCTCCTA | + |
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Preference number: 1 (lower is better) Translates to: SCSVRRYFIFPFMSL*TPSFTFCSIGHNLL Trigger: TAGGAGATTATGGCCTATTGAACAAAATGTGAAACTGGGAGTCCACAAAGACATAAATGGAAAGATGAAGTACCTCCTGACAGAGCAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| 3UTR-3UTR TCA 90 bp | CAGTGCCATTCTTGCTCTGTCAGGAGGTACTTCATCTTTCCATTTATGTCTTTGTGCTATGTCTGTCCTTaGTCCCCACAATTGTTTTCT | + |
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Preference number: 2 (lower is better) Translates to: QCHSCSVRRYFIFPFMSLCYVCP*SPQLFS Trigger: AGAAAACAATTGTGGGGATCAAGGACAGACATAGCA...CAAAGACATAAATGGAAAGATGAAGTACCTCCTGACAGAGCAAGAATGGCACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| 3UTR-3UTR TCA 90 bp | ATTTTCTTTTGGGTAAAGCCAGTTAGCAAACACATACGGTGTGTGATCTCCTCCCTTTTATGTGTAGCCTaGCACGTAAGCAGAATTAAC | + |
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Preference number: 2 (lower is better) Translates to: IFFWVKPVSKHIRCVISSLLCVA*HVSRIN Trigger: GTTAATTCTGCTTACGTGTCAGGCTACACATAAAAG...GGAGGAGATCACACACCGTATGTGTTTGCTAACTGGCTTTACCCAAAAGAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| 3UTR CAA 90 bp | CATTCTTGCTCTGTCAGGAGGTACTTCATCTTTCCATTTATGTCTTaGTGGACTCCCAGTTTCACATTTTGTTCAATAGGCCATAATCTC | + |
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Preference number: 2 (lower is better) Translates to: HSCSVRRYFIFPFMS*WTPSFTFCSIGHNL Trigger: GAGATTATGGCCTATTGAACAAAATGTGAAACTGGGAGTCCACAAAGACATAAATGGAAAGATGAAGTACCTCCTGACAGAGCAAGAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| 3UTR-3UTR CCA 90 bp | CAGTGCCATTCTTGCTCTGTCAGGAGGTACTTCATCTTTCCATTTATGTCTTTGCAAATTGTTCCATATTaGGTCATGAAAGTCCTGTCT | + |
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Preference number: 2 (lower is better) Translates to: QCHSCSVRRYFIFPFMSLQIVPY*VMKVLS Trigger: AGACAGGACTTTCATGACCCAATATGGAACAATTTG...CAAAGACATAAATGGAAAGATGAAGTACCTCCTGACAGAGCAAGAATGGCACTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| 3UTR-3UTR CAA 90 bp | GATTGGTGTGTGACAGTGGTGGGTAAAACCAGTTTTGCAGTCACAGTAGGTTGTTGTTCAGTGCCATTCTaGCTCTGTCAGGAGGTACTT | + |
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Preference number: 3 (lower is better) Translates to: DWCVTVVGKTSFAVTVGCCSVPF*LCQEVL Trigger: AAGTACCTCCTGACAGAGCAAGAATGGCACTGAACA...ACAACCTACTGTGACTGCAAAACTGGTTTTACCCACCACTGTCACACACCAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| 3UTR-3UTR CAA 90 bp | TCTGATTGGTGTGTGACAGTGGTGGGTAAAACCAGTTTTGCAGTCACAGTAGGTACCTGTAACCATTTTTaGCCAATCTTTGAAGTGGCT | + |
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Preference number: 3 (lower is better) Translates to: SDWCVTVVGKTSFAVTVGTCNHF*PIFEVA Trigger: AGCCACTTCAAAGATTGGCAAAAAATGGTTACAGGT...ACCTACTGTGACTGCAAAACTGGTTTTACCCACCACTGTCACACACCAATCAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| 3UTR-3UTR CAA 90 bp | GTGCCATTCTTGCTCTGTCAGGAGGTACTTCATCTTTCCATTTATGTCTTTGTGGTGCTATGTCTGTCCTaGATCCCCACAATTGTTTTC | + |
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Preference number: 3 (lower is better) Translates to: VPFLLCQEVLHLSIYVFVVLCLS*IPTIVF Trigger: GAAAACAATTGTGGGGATCAAGGACAGACATAGCAC...CACAAAGACATAAATGGAAAGATGAAGTACCTCCTGACAGAGCAAGAATGGCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| 3UTR GCA 72 bp | AGCCATTGTCCATATAACATTGTTCAGTGCCATTCTTaGTCTGTCAGGAGGTACTTCATCTTTCCATTTATG | + |
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Preference number: 3 (lower is better) Translates to: SHCPYNIVQCHS*SVRRYFIFPFM Trigger: CATAAATGGAAAGATGAAGTACCTCCTGACAGAGCAAGAATGGCACTGAACAATGTTATATGGACAATGGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| 3UTR CCA 72 bp | GTCAGGAGGTACTTCATCTTTCCATTTATGTCTTTGTaGACTCCCAGTTTCACATTTTGTTCAATAGGCCAT | + |
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Preference number: 3 (lower is better) Translates to: VRRYFIFPFMSL*TPSFTFCSIGH Trigger: ATGGCCTATTGAACAAAATGTGAAACTGGGAGTCCACAAAGACATAAATGGAAAGATGAAGTACCTCCTGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| 3UTR TCA 72 bp | GTCATGAAAGTCCTGTCTAAGTGCTATGTCTGTCCTTaGTCCCCACAATTGTTTTCTGGTTTACAGTTAAAA | + |
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Preference number: 3 (lower is better) Translates to: VMKVLSKCYVCP*SPQLFSGLQLK Trigger: TTTTAACTGTAAACCAGAAAACAATTGTGGGGATCAAGGACAGACATAGCACTTAGACAGGACTTTCATGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| 3UTR CCA 72 bp | TTCACATTTTGTTCAATAGGCCATAATCTCCTATTCTaGTACTCAAATTGTTCCATATTGGGTCATGAAAGT | + |
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Preference number: 3 (lower is better) Translates to: FTFCSIGHNLLF*YSNCSILGHES Trigger: ACTTTCATGACCCAATATGGAACAATTTGAGTACCAGAATAGGAGATTATGGCCTATTGAACAAAATGTGAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR TCA 90 bp | TCTGATTGGTGTGTGACAGTGGTGGGTAAAACCAGTTTTGCAGTCACAGTAGGTCTGCACCATCATCGCTaGGGTAGGCACATCCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: SDWCVTVVGKTSFAVTVGLHHHR*GRHILH Trigger: GTGAAGGATGTGCCTACCTCAGCGATGATGGTGCAG...ACCTACTGTGACTGCAAAACTGGTTTTACCCACCACTGTCACACACCAATCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR TCA 90 bp | TGGTGTGTGACAGTGGTGGGTAAAACCAGTTTTGCAGTCACAGTAGGTTGTTTTTGCTATGTCTGTCCTTaGTCCCCACAATTGTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: WCVTVVGKTSFAVTVGCFCYVCP*SPQLFS Trigger: AGAAAACAATTGTGGGGATCAAGGACAGACATAGCA...AAAACAACCTACTGTGACTGCAAAACTGGTTTTACCCACCACTGTCACACACCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR TCA 90 bp | GTGCCATTCTTGCTCTGTCAGGAGGTACTTCATCTTTCCATTTATGTCTTTGTGGATTTCAGTTCAGACTaGGTCCTAGTCTCTTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: VPFLLCQEVLHLSIYVFVDFSSD*VLVSFP Trigger: GGGAAAAGAGACTAGGACTCAGTCTGAACTGAAATC...CACAAAGACATAAATGGAAAGATGAAGTACCTCCTGACAGAGCAAGAATGGCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR GCA 90 bp | TTCAGTGCCATTCTTGCTCTGTCAGGAGGTACTTCATCTTTCCATTTATGTCTTACATCTAGCTGTTGCTaGACCATCATCGCTGAGGTA | + |
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Preference number: 4 (lower is better) Translates to: FSAILALSGGTSSFHLCLTSSCC*TIIAEV Trigger: TACCTCAGCGATGATGGTGCAGCAACAGCTAGATGT...AAGACATAAATGGAAAGATGAAGTACCTCCTGACAGAGCAAGAATGGCACTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR CCA 90 bp | AGGAGGTACTTCATCTTTCCATTTATGTCTTTGTGGACTCCCAGTTTCACATTTCTGGCAAGTTCTGATTaGTGTGTGACAGTGGTGGGT | + |
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Preference number: 4 (lower is better) Translates to: RRYFIFPFMSLWTPSFTFLASSD*CVTVVG Trigger: ACCCACCACTGTCACACACCAATCAGAACTTGCCAG...AAATGTGAAACTGGGAGTCCACAAAGACATAAATGGAAAGATGAAGTACCTCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR GCA 90 bp | CTTTGTTTTGACAGATTTCAGTTCAGACTGAGTCCTAGTCTCTTTTCCCTATTGGTTCAGTGCCATTCTTaGTCTGTCAGGAGGTACTTC | + |
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Preference number: 4 (lower is better) Translates to: LCFDRFQFRLSPSLFSLLVQCHS*SVRRYF Trigger: GAAGTACCTCCTGACAGAGCAAGAATGGCACTGAAC...CAATAGGGAAAAGAGACTAGGACTCAGTCTGAACTGAAATCTGTCAAAACAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR TCA 90 bp | GTGCCATTCTTGCTCTGTCAGGAGGTACTTCATCTTTCCATTTATGTCTTTGTGCTTTTATGTGTAGCCTaGCACGTAAGCAGAATTAAC | + |
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Preference number: 4 (lower is better) Translates to: VPFLLCQEVLHLSIYVFVLLCVA*HVSRIN Trigger: GTTAATTCTGCTTACGTGTCAGGCTACACATAAAAG...CACAAAGACATAAATGGAAAGATGAAGTACCTCCTGACAGAGCAAGAATGGCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR GCA 90 bp | TGGTGTGTGACAGTGGTGGGTAAAACCAGTTTTGCAGTCACAGTAGGTTGTTTTCTTTGTGTCATGTCTTaGAGAAACTCTCTTCAAAGT | + |
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Preference number: 4 (lower is better) Translates to: WCVTVVGKTSFAVTVGCFLCVMS*RNSLQS Trigger: ACTTTGAAGAGAGTTTCTGCAAGACATGACACAAAG...AAAACAACCTACTGTGACTGCAAAACTGGTTTTACCCACCACTGTCACACACCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR GCA 90 bp | TTTATGTCTTTGTGGACTCCCAGTTTCACATTTTGTTCAATAGGCCATAATCTCGTAACATCTAGCTGTTaGTGCACCATCATCGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: FMSLWTPSFTFCSIGHNLVTSSC*CTIIAE Trigger: CTCAGCGATGATGGTGCAGCAACAGCTAGATGTTAC...GAGATTATGGCCTATTGAACAAAATGTGAAACTGGGAGTCCACAAAGACATAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR TCA 90 bp | CTTTGTTTTGACAGATTTCAGTTCAGACTGAGTCCTAGTCTCTTTTCCCTATTGGTTAGGTCGGCATGTTaGGTGGAACAGTTGTATTTA | + |
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Preference number: 4 (lower is better) Translates to: LCFDRFQFRLSPSLFSLLVRSAC*VEQLYL Trigger: TAAATACAACTGTTCCACTCAACATGCCGACCTAAC...CAATAGGGAAAAGAGACTAGGACTCAGTCTGAACTGAAATCTGTCAAAACAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR CCA 90 bp | GTGCCATTCTTGCTCTGTCAGGAGGTACTTCATCTTTCCATTTATGTCTTTGTGCAAATTGTTCCATATTaGGTCATGAAAGTCCTGTCT | + |
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Preference number: 4 (lower is better) Translates to: VPFLLCQEVLHLSIYVFVQIVPY*VMKVLS Trigger: AGACAGGACTTTCATGACCCAATATGGAACAATTTG...CACAAAGACATAAATGGAAAGATGAAGTACCTCCTGACAGAGCAAGAATGGCAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR CCA 90 bp | AGGAGGTACTTCATCTTTCCATTTATGTCTTTGTGGACTCCCAGTTTCACATTTAAAGTTTTGAGGAGCTaGCAAGTTCTGATTGGTGTG | + |
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Preference number: 4 (lower is better) Translates to: RRYFIFPFMSLWTPSFTFKVLRS*QVLIGV Trigger: CACACCAATCAGAACTTGCCAGCTCCTCAAAACTTT...AAATGTGAAACTGGGAGTCCACAAAGACATAAATGGAAAGATGAAGTACCTCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR TCA 90 bp | TTTATGTCTTTGTGGACTCCCAGTTTCACATTTTGTTCAATAGGCCATAATCTCTTCAGTCCAATCCAGTaGTCAGAACTGCATTTATAC | + |
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Preference number: 4 (lower is better) Translates to: FMSLWTPSFTFCSIGHNLFSPIQ*SELHLY Trigger: GTATAAATGCAGTTCTGATCACTGGATTGGACTGAA...GAGATTATGGCCTATTGAACAAAATGTGAAACTGGGAGTCCACAAAGACATAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS GCA 90 bp | TTTCCTGCAAATCCATTTTCTTTCGGTGTAACATCTAGCTGTTGCTaGACCATCATCGCTGAGGTAGGCACATCCTTCACTCCCTCTCAT | + |
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Preference number: 5 (lower is better) Translates to: FPANPFSFGVTSSCC*TIIAEVGTSFTPSH Trigger: ATGAGAGGGAGTGAAGGATGTGCCTACCTCAGCGATGATGGTGCAGCAACAGCTAGATGTTACACCGAAAGAAAATGGATTTGCAGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000228438.3 ENST00000538152.1 |
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| CDS GCA 90 bp | TCTTTTCCTGCAAATCCATTTTCTTTCGGTGTAACATCTAGCTGTTaGTGCACCATCATCGCTGAGGTAGGCACATCCTTCACTCCCTCT | + |
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Preference number: 5 (lower is better) Translates to: SFPANPFSFGVTSSC*CTIIAEVGTSFTPS Trigger: AGAGGGAGTGAAGGATGTGCCTACCTCAGCGATGATGGTGCAGCAACAGCTAGATGTTACACCGAAAGAAAATGGATTTGCAGGAAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000228438.3 ENST00000538152.1 |
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| CDS GCA 90 bp | TTTCCTCTCTATTGCATTACTGGTAGAGAGTGTTCTAATGGAAGCTaGCACGGGACCTCAGAGACAGGCAGCAAAACAAAATGGAGAAGT | + |
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Preference number: 5 (lower is better) Translates to: FPLYCITGRECSNGS*HGTSETGSKTKWRS Trigger: ACTTCTCCATTTTGTTTTGCTGCCTGTCTCTGAGGTCCCGTGGCAGCTTCCATTAGAACACTCTCTACCAGTAATGCAATAGAGAGGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000539028.1 ENST00000540743.1 |
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| CDS GCA 90 bp | AACTTACACTCCGGTCTAGGAGGAAATTTTGATTTTCCTCTCTATTaGATTACTGGTAGAGAGTGTTCTAATGGAAGCTGCCACGGGACC | + |
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Preference number: 5 (lower is better) Translates to: NLHSGLGGNFDFPLY*ITGRECSNGSCHGT Trigger: GGTCCCGTGGCAGCTTCCATTAGAACACTCTCTACCAGTAATGCAATAGAGAGGAAAATCAAAATTTCCTCCTAGACCGGAGTGTAAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000539028.1 ENST00000540743.1 |
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| CDS-3UTR CAA 90 bp | TCTGATTGGTGTGTGACAGTGGTGGGTAAAACCAGTTTTGCAGTCACAGTAGGTTTTCTGCTAGCAGCTTaGTGTCATGTCTTGCAGAAA | + |
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Preference number: 5 (lower is better) Translates to: SDWCVTVVGKTSFAVTVGFLLAA*CHVLQK Trigger: TTTCTGCAAGACATGACACAAAGCTGCTAGCAGAAA...ACCTACTGTGACTGCAAAACTGGTTTTACCCACCACTGTCACACACCAATCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR CAA 90 bp | CATATAACATTGTTCAGTGCCATTCTTGCTCTGTCAGGAGGTACTTCATCTTTCGGCCCTAGTAAAGTTTaGAGGAGCTGGCAAGTTCTG | + |
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Preference number: 5 (lower is better) Translates to: HITLFSAILALSGGTSSFGPSKV*RSWQVL Trigger: CAGAACTTGCCAGCTCCTCAAAACTTTACTAGGGCC...GAAAGATGAAGTACCTCCTGACAGAGCAAGAATGGCACTGAACAATGTTATATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR CAA 90 bp | TCTGTCAGGAGGTACTTCATCTTTCCATTTATGTCTTTGTGGACTCCCAGTTTCGTCCTGTTCGATTTTTaGCCATCTTCAGTCCAATCC | + |
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Preference number: 5 (lower is better) Translates to: SVRRYFIFPFMSLWTPSFVLFDF*PSSVQS Trigger: GGATTGGACTGAAGATGGCAAAAAATCGAACAGGAC...GAAACTGGGAGTCCACAAAGACATAAATGGAAAGATGAAGTACCTCCTGACAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR CAA 90 bp | GATTGGTGTGTGACAGTGGTGGGTAAAACCAGTTTTGCAGTCACAGTAGGTTGTACCTGTAACCATTTTTaGCCAATCTTTGAAGTGGCT | + |
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Preference number: 5 (lower is better) Translates to: DWCVTVVGKTSFAVTVGCTCNHF*PIFEVA Trigger: AGCCACTTCAAAGATTGGCAAAAAATGGTTACAGGT...ACAACCTACTGTGACTGCAAAACTGGTTTTACCCACCACTGTCACACACCAATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR CAA 90 bp | GATTGGTGTGTGACAGTGGTGGGTAAAACCAGTTTTGCAGTCACAGTAGGTTGTAATGACCCCATTTGTTaGATCAACTTGTACAGATCA | + |
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Preference number: 5 (lower is better) Translates to: DWCVTVVGKTSFAVTVGCNDPIC*INLYRS Trigger: TGATCTGTACAAGTTGATCAAACAAATGGGGTCATT...ACAACCTACTGTGACTGCAAAACTGGTTTTACCCACCACTGTCACACACCAATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR CAA 90 bp | TGGTGTGTGACAGTGGTGGGTAAAACCAGTTTTGCAGTCACAGTAGGTTGTTTTAAACACTTTTTATGTTaGGTCATCATACCGTGCTTC | + |
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Preference number: 5 (lower is better) Translates to: WCVTVVGKTSFAVTVGCFKHFLC*VIIPCF Trigger: GAAGCACGGTATGATGACCAAACATAAAAAGTGTTT...AAAACAACCTACTGTGACTGCAAAACTGGTTTTACCCACCACTGTCACACACCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR CAA 90 bp | CTTTGTTTTGACAGATTTCAGTTCAGACTGAGTCCTAGTCTCTTTTCCCTATTGGTGCTATGTCTGTCCTaGATCCCCACAATTGTTTTC | + |
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Preference number: 5 (lower is better) Translates to: LCFDRFQFRLSPSLFSLLVLCLS*IPTIVF Trigger: GAAAACAATTGTGGGGATCAAGGACAGACATAGCAC...CAATAGGGAAAAGAGACTAGGACTCAGTCTGAACTGAAATCTGTCAAAACAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR CAA 90 bp | TTTATGTCTTTGTGGACTCCCAGTTTCACATTTTGTTCAATAGGCCATAATCTCTGTTCAGTGCCATTCTaGCTCTGTCAGGAGGTACTT | + |
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Preference number: 5 (lower is better) Translates to: FMSLWTPSFTFCSIGHNLCSVPF*LCQEVL Trigger: AAGTACCTCCTGACAGAGCAAGAATGGCACTGAACA...GAGATTATGGCCTATTGAACAAAATGTGAAACTGGGAGTCCACAAAGACATAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR CAA 90 bp | TGGTGTGTGACAGTGGTGGGTAAAACCAGTTTTGCAGTCACAGTAGGTTGTTTTATTGTCCATATAACATaGTTCAGTGCCATTCTTGCT | + |
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Preference number: 5 (lower is better) Translates to: WCVTVVGKTSFAVTVGCFIVHIT*FSAILA Trigger: AGCAAGAATGGCACTGAACAATGTTATATGGACAAT...AAAACAACCTACTGTGACTGCAAAACTGGTTTTACCCACCACTGTCACACACCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS CCA 90 bp | ACCTGCTTTGTGCATAATGCTAAGGATAAAATTTCACAGAAGACATaGTATCTGCTCACTGAAAACTTACACTCCGGTCTAGGAGGAAAT | + |
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Preference number: 5 (lower is better) Translates to: TCFVHNAKDKISQKT*YLLTENLHSGLGGN Trigger: ATTTCCTCCTAGACCGGAGTGTAAGTTTTCAGTGAGCAGATACCATGTCTTCTGTGAAATTTTATCCTTAGCATTATGCACAAAGCAGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000539028.1 ENST00000540743.1 |
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| CDS-3UTR CAA 90 bp | AGGAGGTACTTCATCTTTCCATTTATGTCTTTGTGGACTCCCAGTTTCACATTTCTCATGCCAAACGATTaGGTAAATGTAGCTCCATCT | + |
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Preference number: 5 (lower is better) Translates to: RRYFIFPFMSLWTPSFTFLMPND*VNVAPS Trigger: AGATGGAGCTACATTTACCAAATCGTTTGGCATGAG...AAATGTGAAACTGGGAGTCCACAAAGACATAAATGGAAAGATGAAGTACCTCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS-3UTR CAA 90 bp | TTCAGTGCCATTCTTGCTCTGTCAGGAGGTACTTCATCTTTCCATTTATGTCTTTTTCCATTTATGTCTTaGTGGACTCCCAGTTTCACA | + |
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Preference number: 5 (lower is better) Translates to: FSAILALSGGTSSFHLCLFPFMS*WTPSFT Trigger: TGTGAAACTGGGAGTCCACAAAGACATAAATGGAAA...AAGACATAAATGGAAAGATGAAGTACCTCCTGACAGAGCAAGAATGGCACTGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000228438.3 |
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| CDS TCA 90 bp | CTTACCATTTCTTCTATGTTGTCAATTATAGTTAGGTCGGCATGTTaGGTGGAACAGTTGTATTTACTTGAATTCCAATCTCCTTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: LTISSMLSIIVRSAC*VEQLYLLEFQSPSS Trigger: AGAAGAAGGAGATTGGAATTCAAGTAAATACAACTGTTCCACTCAACATGCCGACCTAACTATAATTGACAACATAGAAGAAATGGTAAG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000539028.1 ENST00000540743.1 |
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| CDS GCA 72 bp | GCAAATCCATTTTCTTTCGGTGTAACATCTAGCTGTTaGTGCACCATCATCGCTGAGGTAGGCACATCCTTC | + |
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Preference number: 6 (lower is better) Translates to: ANPFSFGVTSSC*CTIIAEVGTSF Trigger: GAAGGATGTGCCTACCTCAGCGATGATGGTGCAGCAACAGCTAGATGTTACACCGAAAGAAAATGGATTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000228438.3 ENST00000538152.1 |
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| CDS GCA 72 bp | AATCCATTTTCTTTCGGTGTAACATCTAGCTGTTGCTaGACCATCATCGCTGAGGTAGGCACATCCTTCACT | + |
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Preference number: 6 (lower is better) Translates to: NPFSFGVTSSCC*TIIAEVGTSFT Trigger: AGTGAAGGATGTGCCTACCTCAGCGATGATGGTGCAGCAACAGCTAGATGTTACACCGAAAGAAAATGGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000228438.3 ENST00000538152.1 |
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| CDS GCA 72 bp | TATTGCATTACTGGTAGAGAGTGTTCTAATGGAAGCTaGCACGGGACCTCAGAGACAGGCAGCAAAACAAAA | + |
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Preference number: 6 (lower is better) Translates to: YCITGRECSNGS*HGTSETGSKTK Trigger: TTTTGTTTTGCTGCCTGTCTCTGAGGTCCCGTGGCAGCTTCCATTAGAACACTCTCTACCAGTAATGCAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000539028.1 ENST00000540743.1 |
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| CDS TCA 72 bp | TCTTCTATGTTGTCAATTATAGTTAGGTCGGCATGTTaGGTGGAACAGTTGTATTTACTTGAATTCCAATCT | + |
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Preference number: 6 (lower is better) Translates to: SSMLSIIVRSAC*VEQLYLLEFQS Trigger: AGATTGGAATTCAAGTAAATACAACTGTTCCACTCAACATGCCGACCTAACTATAATTGACAACATAGAAGA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000228438.3 ENST00000539028.1 ENST00000540743.1 |
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