RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CHRM1 (Homo sapiens)

Ensembl gene IDs: ENSG00000168539

Ensembl transcript IDs: ENST00000306960.4, ENST00000536524.1, ENST00000543973.1

Found 173 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGGACATTTGTGGACAATCCTGGAGAGTATGCCTAGGGCCCAGGTaGGCGGGCTCTGCCTATGAAGCGAGGGGATTCCCCAGCTCCCTG +
Preference number: 1 (lower is better)
Translates to: EDICGQSWRVCLGPR*AGSAYEARGFPSSL
Trigger: CAGGGAGCTGGGGAATCCCCTCGCTTCATAGGCAGAGCCCGCCCACCTGGGCCCTAGGCATACTCTCCAGGATTGTCCACAAATGTCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR CCA 90 bp GAAAGGAAAGAACATTTGGGGCCAGGCTGGGCCTGGAGATCCGGGTaGCTGGGAGGCCATGCATGGGTTGGATTGGGGAGCTCACAGGAG +
Preference number: 1 (lower is better)
Translates to: ERKEHLGPGWAWRSG*LGGHAWVGLGSSQE
Trigger: CTCCTGTGAGCTCCCCAATCCAACCCATGCATGGCCTCCCAGCCACCCGGATCTCCAGGCCCAGCCTGGCCCCAAATGTTCTTTCCTTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR GCA 90 bp TTAAGCCTTCTTTCTCCTGGCCCGCCCTGCTGGCTCCTGACTTCCTaGCTAAAGGCAAACAAGGAGTCCAAAGCCCGGATCCTCCTCCCG +
Preference number: 1 (lower is better)
Translates to: LSLLSPGPPCWLLTS*LKANKESKARILLP
Trigger: CGGGAGGAGGATCCGGGCTTTGGACTCCTTGTTTGCCTTTAGGCAGGAAGTCAGGAGCCAGCAGGGCGGGCCAGGAGAAAGAAGGCTTAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR TCA 90 bp GGACACCTGGCTCCTGGTCCTGTTGCTGCCTCGGGACTTGATATGTaGCTAGCCAAGCCGGACCCTTCCAGTGTCATTGTCTTGCTGATG +
Preference number: 1 (lower is better)
Translates to: GHLAPGPVAASGLDM*LAKPDPSSVIVLLM
Trigger: CATCAGCAAGACAATGACACTGGAAGGGTCCGGCTTGGCTAGTCACATATCAAGTCCCGAGGCAGCAACAGGACCAGGAGCCAGGTGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR TCA 90 bp GATGCTTGGACATTTGCCTTGGAGTTGACCCACCTAGGGACCCTCTaGGGACATTTGTGGACAATCCTGGAGAGTATGCCTAGGGCCCAG +
Preference number: 1 (lower is better)
Translates to: DAWTFALELTHLGTL*GHLWTILESMPRAQ
Trigger: CTGGGCCCTAGGCATACTCTCCAGGATTGTCCACAAATGTCCTCAGAGGGTCCCTAGGTGGGTCAACTCCAAGGCAAATGTCCAAGCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR CCA 90 bp CCGCTGCTGGGCCAAGGAATACTTAATGTTAAGCCTTCTTTCTCCTaGCCCGCCCTGCTGGCTCCTGACTTCCTGCCTAAAGGCAAACAA +
Preference number: 1 (lower is better)
Translates to: PLLGQGILNVKPSFS*PALLAPDFLPKGKQ
Trigger: TTGTTTGCCTTTAGGCAGGAAGTCAGGAGCCAGCAGGGCGGGCCAGGAGAAAGAAGGCTTAACATTAAGTATTCCTTGGCCCAGCAGCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR CCA 90 bp AAGGAATACTTAATGTTAAGCCTTCTTTCTCCTGGCCCGCCCTGCTaGCTCCTGACTTCCTGCCTAAAGGCAAACAAGGAGTCCAAAGCC +
Preference number: 1 (lower is better)
Translates to: KEYLMLSLLSPGPPC*LLTSCLKANKESKA
Trigger: GGCTTTGGACTCCTTGTTTGCCTTTAGGCAGGAAGTCAGGAGCCAGCAGGGCGGGCCAGGAGAAAGAAGGCTTAACATTAAGTATTCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR CAA 90 bp TCCCCGGGTTTCCCTCCCTGCCTGGGAATAGCGAAGTCTGGAAAGTaGGCAGGGTCTCTCTGGGCTGCCCAGGAAGGTGACCCAGGGTCC +
Preference number: 2 (lower is better)
Translates to: SPGFPPCLGIAKSGK*AGSLWAAQEGDPGS
Trigger: GGACCCTGGGTCACCTTCCTGGGCAGCCCAGAGAGACCCTGCCAACTTTCCAGACTTCGCTATTCCCAGGCAGGGAGGGAAACCCGGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR-3UTR CCA 90 bp CCCTGCCTGGGAATAGCGAAGTCTGGAAAGTTGGCAGGGTCTCTCTGGGCTGCCGCCTTTCCCGGGGACTaGGGTGGAGGGATGCAGGAG +
Preference number: 2 (lower is better)
Translates to: PCLGIAKSGKLAGSLWAAAFPGD*GGGMQE
Trigger: CTCCTGCATCCCTCCACCCCAGTCCCCGGGAAAGGC...GGCAGCCCAGAGAGACCCTGCCAACTTTCCAGACTTCGCTATTCCCAGGCAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR-3UTR CCA 90 bp CATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGAACCTGCTGGCTGGGCCAGTTGGCAGGGTCTCTCTaGGCTGCCCAGGAAGGTGAC +
Preference number: 2 (lower is better)
Translates to: HAWVGLGSSQERTCWLGQLAGSL*AAQEGD
Trigger: GTCACCTTCCTGGGCAGCCCAGAGAGACCCTGCCAA...CTGGCCCAGCCAGCAGGTTCTCTCCTGTGAGCTCCCCAATCCAACCCATGCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR-3UTR GCA 90 bp ATCCGGGTGGCTGGGAGGCCATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGCAGGGGGTATGGATTTaGGGCTGGATAGCAGGCACA +
Preference number: 2 (lower is better)
Translates to: IRVAGRPCMGWIGELTGEQGVWI*GWIAGT
Trigger: TGTGCCTGCTATCCAGCCGCAAATCCATACCCCCTG...CTCTCCTGTGAGCTCCCCAATCCAACCCATGCATGGCCTCCCAGCCACCCGGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR-3UTR CCA 90 bp CATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGAACCTGCTGGCTGGGCCAGCGAAGTCTGGAAAGTTaGCAGGGTCTCTCTGGGCTG +
Preference number: 2 (lower is better)
Translates to: HAWVGLGSSQERTCWLGQRSLES*QGLSGL
Trigger: CAGCCCAGAGAGACCCTGCCAACTTTCCAGACTTCG...CTGGCCCAGCCAGCAGGTTCTCTCCTGTGAGCTCCCCAATCCAACCCATGCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR-3UTR CCA 90 bp TCCTCCTCCCGGGCCTTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAAGGGAATAGCGAAGTCTaGAAAGTTGGCAGGGTCTCT +
Preference number: 2 (lower is better)
Translates to: SSSRAFFLVKSAFPPSREGNSEV*KVGRVS
Trigger: AGAGACCCTGCCAACTTTCCAGACTTCGCTATTCCC...TTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAAGGCCCGGGAGGAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR-3UTR GCA 90 bp TTCCCCAGCTCCCTGTCATCTGGCTTTTCTCCCAGCGGCCAGTTCAGTTTCTGGCGCAATCTGGGCCGCTaGTGGGCCAAGGAATACTTA +
Preference number: 2 (lower is better)
Translates to: FPSSLSSGFSPSGQFSFWRNLGR*WAKEYL
Trigger: TAAGTATTCCTTGGCCCAGCAGCGGCCCAGATTGCG...CCAGAAACTGAACTGGCCGCTGGGAGAAAAGCCAGATGACAGGGAGCTGGGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR-3UTR TCA 90 bp ATCTCACACCGCAATCTGGGCCGCTGCTGGGCCAAGGAATACTTAATGTTAAGCGGGCCTTCTTCCTGGTaGAGAGCGCATTCCCACCCA +
Preference number: 2 (lower is better)
Translates to: ISHRNLGRCWAKEYLMLSGPSSW*RAHSHP
Trigger: TGGGTGGGAATGCGCTCTTCACCAGGAAGAAGGCCC...GCTTAACATTAAGTATTCCTTGGCCCAGCAGCGGCCCAGATTGCGGTGTGAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR CCA 72 bp CCCGGGTTTCCCTCCCTGCCTGGGAATAGCGAAGTCTaGAAAGTTGGCAGGGTCTCTCTGGGCTGCCCAGGA +
Preference number: 3 (lower is better)
Translates to: PGFPSLPGNSEV*KVGRVSLGCPG
Trigger: TCCTGGGCAGCCCAGAGAGACCCTGCCAACTTTCCAGACTTCGCTATTCCCAGGCAGGGAGGGAAACCCGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR CCA 72 bp TGTGGACAATCCTGGAGAGTATGCCTAGGGCCCAGGTaGGCGGGCTCTGCCTATGAAGCGAGGGGATTCCCC +
Preference number: 3 (lower is better)
Translates to: CGQSWRVCLGPR*AGSAYEARGFP
Trigger: GGGGAATCCCCTCGCTTCATAGGCAGAGCCCGCCCACCTGGGCCCTAGGCATACTCTCCAGGATTGTCCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR CCA 72 bp CTGGAGATCCGGGTGGCTGGGAGGCCATGCATGGGTTaGATTGGGGAGCTCACAGGAGAGAACCTGCTGGCT +
Preference number: 3 (lower is better)
Translates to: LEIRVAGRPCMG*IGELTGENLLA
Trigger: AGCCAGCAGGTTCTCTCCTGTGAGCTCCCCAATCCAACCCATGCATGGCCTCCCAGCCACCCGGATCTCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR-3UTR CAA 90 bp TCCTCCTCCCGGGCCTTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAAGCGAAGTCTGGAAAGTaGGCAGGGTCTCTCTGGGCT +
Preference number: 3 (lower is better)
Translates to: SSSRAFFLVKSAFPPSREAKSGK*AGSLWA
Trigger: AGCCCAGAGAGACCCTGCCAACTTTCCAGACTTCGC...TTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAAGGCCCGGGAGGAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR GCA 72 bp GGGACTGAGGCTTCTCTGGGGCAGGGGGTATGGATTTaGGGCTGGATAGCAGGCACACTTGACTCCCACTCC +
Preference number: 3 (lower is better)
Translates to: GTEASLGQGVWI*GWIAGTLDSHS
Trigger: GGAGTGGGAGTCAAGTGTGCCTGCTATCCAGCCGCAAATCCATACCCCCTGCCCCAGAGAAGCCTCAGTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR TCA 72 bp CAAAGCCCGGATCCTCCTCCCGGGCCTTCTTCCTGGTaGAGAGCGCATTCCCACCCAGCAGGGAACAGAAAA +
Preference number: 3 (lower is better)
Translates to: QSPDPPPGPSSW*RAHSHPAGNRK
Trigger: TTTTCTGTTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAAGGCCCGGGAGGAGGATCCGGGCTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR GCA 72 bp CTTTCTCCTGGCCCGCCCTGCTGGCTCCTGACTTCCTaGCTAAAGGCAAACAAGGAGTCCAAAGCCCGGATC +
Preference number: 3 (lower is better)
Translates to: LSPGPPCWLLTS*LKANKESKARI
Trigger: GATCCGGGCTTTGGACTCCTTGTTTGCCTTTAGGCAGGAAGTCAGGAGCCAGCAGGGCGGGCCAGGAGAAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR CCA 72 bp GAGGCTTCTCTGGGGCAGGGGGTATGGATTTGCGGCTaGATAGCAGGCACACTTGACTCCCACTCCCAGGAA +
Preference number: 3 (lower is better)
Translates to: EASLGQGVWICG*IAGTLDSHSQE
Trigger: TTCCTGGGAGTGGGAGTCAAGTGTGCCTGCTATCCAGCCGCAAATCCATACCCCCTGCCCCAGAGAAGCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR TCA 72 bp ACACCTGGCTCCTGGTCCTGTTGCTGCCTCGGGACTTaGTATGTGACTAGCCAAGCCGGACCCTTCCAGTGT +
Preference number: 3 (lower is better)
Translates to: TPGSWSCCCLGT*YVTSQAGPFQC
Trigger: ACACTGGAAGGGTCCGGCTTGGCTAGTCACATATCAAGTCCCGAGGCAGCAACAGGACCAGGAGCCAGGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR TCA 72 bp GCTCCTGGTCCTGTTGCTGCCTCGGGACTTGATATGTaGCTAGCCAAGCCGGACCCTTCCAGTGTCATTGTC +
Preference number: 3 (lower is better)
Translates to: APGPVAASGLDM*LAKPDPSSVIV
Trigger: GACAATGACACTGGAAGGGTCCGGCTTGGCTAGTCACATATCAAGTCCCGAGGCAGCAACAGGACCAGGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR GCA 72 bp GGGAACAGAAAAACCAGTTCCCCGGGTTTCCCTCCCTaGCTGGGAATAGCGAAGTCTGGAAAGTTGGCAGGG +
Preference number: 3 (lower is better)
Translates to: GNRKTSSPGFPP*LGIAKSGKLAG
Trigger: CCCTGCCAACTTTCCAGACTTCGCTATTCCCAGGCAGGGAGGGAAACCCGGGGAACTGGTTTTTCTGTTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR GCA 72 bp CCAGGGGGCACCATCTCACACCGCAATCTGGGCCGCTaGTGGGCCAAGGAATACTTAATGTTAAGCCTTCTT +
Preference number: 3 (lower is better)
Translates to: PGGTISHRNLGR*WAKEYLMLSLL
Trigger: AAGAAGGCTTAACATTAAGTATTCCTTGGCCCAGCAGCGGCCCAGATTGCGGTGTGAGATGGTGCCCCCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR CCA 72 bp GGGGGCACCATCTCACACCGCAATCTGGGCCGCTGCTaGGCCAAGGAATACTTAATGTTAAGCCTTCTTTCT +
Preference number: 3 (lower is better)
Translates to: GGTISHRNLGRC*AKEYLMLSLLS
Trigger: AGAAAGAAGGCTTAACATTAAGTATTCCTTGGCCCAGCAGCGGCCCAGATTGCGGTGTGAGATGGTGCCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR CCA 72 bp GGCCAAGGAATACTTAATGTTAAGCCTTCTTTCTCCTaGCCCGCCCTGCTGGCTCCTGACTTCCTGCCTAAA +
Preference number: 3 (lower is better)
Translates to: GQGILNVKPSFS*PALLAPDFLPK
Trigger: TTTAGGCAGGAAGTCAGGAGCCAGCAGGGCGGGCCAGGAGAAAGAAGGCTTAACATTAAGTATTCCTTGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR TCA 72 bp ACATTTGCCTTGGAGTTGACCCACCTAGGGACCCTCTaGGGACATTTGTGGACAATCCTGGAGAGTATGCCT +
Preference number: 3 (lower is better)
Translates to: TFALELTHLGTL*GHLWTILESMP
Trigger: AGGCATACTCTCCAGGATTGTCCACAAATGTCCTCAGAGGGTCCCTAGGTGGGTCAACTCCAAGGCAAATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp GTATGCCTAGGGCCCAGGTGGGCGGGCTCTGCCTATGAAGCGAGGGGATTCCCCGAGCTCCGTGGGGGCTaGTTGGTGGGGGCCTGTGCC +
Preference number: 4 (lower is better)
Translates to: VCLGPRWAGSAYEARGFPELRGG*LVGACA
Trigger: GGCACAGGCCCCCACCAAGCAGCCCCCACGGAGCTC...GGGGAATCCCCTCGCTTCATAGGCAGAGCCCGCCCACCTGGGCCCTAGGCATAC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp GTATGCCTAGGGCCCAGGTGGGCGGGCTCTGCCTATGAAGCGAGGGGATTCCCCCTGAGCTGCTGCTGCTaGCACCCCCTTTGCCTGGCG +
Preference number: 4 (lower is better)
Translates to: VCLGPRWAGSAYEARGFPLSCCC*HPLCLA
Trigger: CGCCAGGCAAAGGGGGTGGCAGCAGCAGCAGCTCAG...GGGGAATCCCCTCGCTTCATAGGCAGAGCCCGCCCACCTGGGCCCTAGGCATAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp CATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGAACCTGCTGGCTGGGCCAGTGGGCCAGGCCTGTGTaGGGCAGGGCCGGAGGCAGG +
Preference number: 4 (lower is better)
Translates to: HAWVGLGSSQERTCWLGQWARPV*GRAGGR
Trigger: CCTGCCTCCGGCCCTGCCCCACACAGGCCTGGCCCA...CTGGCCCAGCCAGCAGGTTCTCTCCTGTGAGCTCCCCAATCCAACCCATGCATG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp ATCCGGGTGGCTGGGAGGCCATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGGGGCCAGGCTGGGCCTaGAGATCCGGGTGGCTGGGA +
Preference number: 4 (lower is better)
Translates to: IRVAGRPCMGWIGELTGEGPGWA*RSGWLG
Trigger: TCCCAGCCACCCGGATCTCCAGGCCCAGCCTGGCCC...CTCTCCTGTGAGCTCCCCAATCCAACCCATGCATGGCCTCCCAGCCACCCGGAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR TCA 90 bp CCCTGCCTGGGAATAGCGAAGTCTGGAAAGTTGGCAGGGTCTCTCTGGGCTGCCGGCGTCTCGGAGCCCTaGAGGGCTGCCAGCTCCCGT +
Preference number: 4 (lower is better)
Translates to: PCLGIAKSGKLAGSLWAAGVSEP*RAASSR
Trigger: ACGGGAGCTGGCAGCCCTTCAGGGCTCCGAGACGCC...GGCAGCCCAGAGAGACCCTGCCAACTTTCCAGACTTCGCTATTCCCAGGCAGGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp GTATGCCTAGGGCCCAGGTGGGCGGGCTCTGCCTATGAAGCGAGGGGATTCCCCGTGCCCAGAGCCCAGTaGCCCATGAGCAGGTACGTG +
Preference number: 4 (lower is better)
Translates to: VCLGPRWAGSAYEARGFPVPRAQ*PMSRYV
Trigger: CACGTACCTGCTCATGGGCCACTGGGCTCTGGGCAC...GGGGAATCCCCTCGCTTCATAGGCAGAGCCCGCCCACCTGGGCCCTAGGCATAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp CATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGAACCTGCTGGCTGGGCCAGTCCGTGGGGGCTGCTTaGTGGGGGCCTGTGCCTCGG +
Preference number: 4 (lower is better)
Translates to: HAWVGLGSSQERTCWLGQSVGAA*WGPVPR
Trigger: CCGAGGCACAGGCCCCCACCAAGCAGCCCCCACGGA...CTGGCCCAGCCAGCAGGTTCTCTCCTGTGAGCTCCCCAATCCAACCCATGCATG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp GTATGCCTAGGGCCCAGGTGGGCGGGCTCTGCCTATGAAGCGAGGGGATTCCCCCAGGAGAGAACCTGCTaGCTGGGCCAGGCCTGTGTG +
Preference number: 4 (lower is better)
Translates to: VCLGPRWAGSAYEARGFPQERTC*LGQACV
Trigger: CACACAGGCCTGGCCCAGCCAGCAGGTTCTCTCCTG...GGGGAATCCCCTCGCTTCATAGGCAGAGCCCGCCCACCTGGGCCCTAGGCATAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR TCA 90 bp TCCTCCTCCCGGGCCTTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAACCCTCAGCCCCTGGCTaGGACCTCTCTGAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: SSSRAFFLVKSAFPPSREPSAPG*DLSELL
Trigger: CAGCAGCTCAGAGAGGTCTCAGCCAGGGGCTGAGGG...TTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAAGGCCCGGGAGGAGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp TCCTCCTCCCGGGCCTTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAAGGAGCCCTGAAGGGCTaGCAGCTCCCGTGCTCGGTT +
Preference number: 4 (lower is better)
Translates to: SSSRAFFLVKSAFPPSREGALKG*QLPCSV
Trigger: AACCGAGCACGGGAGCTGGCAGCCCTTCAGGGCTCC...TTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAAGGCCCGGGAGGAGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp GTATGCCTAGGGCCCAGGTGGGCGGGCTCTGCCTATGAAGCGAGGGGATTCCCCGAGACCTCTCTGAGCTaGTGCTGCTGCCACCCCCTT +
Preference number: 4 (lower is better)
Translates to: VCLGPRWAGSAYEARGFPETSLS*CCCHPL
Trigger: AAGGGGGTGGCAGCAGCAGCAGCTCAGAGAGGTCTC...GGGGAATCCCCTCGCTTCATAGGCAGAGCCCGCCCACCTGGGCCCTAGGCATAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp TCCTCCTCCCGGGCCTTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAAAGGGACCCAAACACCTaGCTCCCAGGGGGAGCTGCG +
Preference number: 4 (lower is better)
Translates to: SSSRAFFLVKSAFPPSRERDPNT*LPGGAA
Trigger: CGCAGCTCCCCCTGGGAGCCAGGTGTTTGGGTCCCT...TTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAAGGCCCGGGAGGAGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp GGACCCTCTGAGGACATTTGTGGACAATCCTGGAGAGTATGCCTAGGGCCCAGGAGGCCTGCAGCAGCCTaGGGGCCCGGCAGCAGCGAC +
Preference number: 4 (lower is better)
Translates to: GPSEDICGQSWRVCLGPRRPAAA*GPGSSD
Trigger: GTCGCTGCTGCCGGGCCCCCAGGCTGCTGCAGGCCT...CCTGGGCCCTAGGCATACTCTCCAGGATTGTCCACAAATGTCCTCAGAGGGTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR CAA 72 bp AGATCCGGGTGGCTGGGAGGCCATGCATGGGTTGGATaGGGGAGCTCACAGGAGAGAACCTGCTGGCTGGGC +
Preference number: 4 (lower is better)
Translates to: RSGWLGGHAWVG*GSSQERTCWLG
Trigger: GCCCAGCCAGCAGGTTCTCTCCTGTGAGCTCCCCAATCCAACCCATGCATGGCCTCCCAGCCACCCGGATCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR TCA 90 bp CATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGAACCTGCTGGCTGGGCCAGGGCGGGCTCTGCCTATaGAGCGAGGGGATTCCCCAG +
Preference number: 4 (lower is better)
Translates to: HAWVGLGSSQERTCWLGQGGLCL*SEGIPQ
Trigger: CTGGGGAATCCCCTCGCTTCATAGGCAGAGCCCGCC...CTGGCCCAGCCAGCAGGTTCTCTCCTGTGAGCTCCCCAATCCAACCCATGCATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp GGACCCTCTGAGGACATTTGTGGACAATCCTGGAGAGTATGCCTAGGGCCCAGGGGGAGCTGCGCCCTGTaGTGGCAGCGGGAGAGGCAC +
Preference number: 4 (lower is better)
Translates to: GPSEDICGQSWRVCLGPRGSCAL*WQRERH
Trigger: GTGCCTCTCCCGCTGCCAGCACAGGGCGCAGCTCCC...CCTGGGCCCTAGGCATACTCTCCAGGATTGTCCACAAATGTCCTCAGAGGGTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp CATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGAACCTGCTGGCTGGGCCAGGCCGATCATCAGAGCTaGCCGGCGGGGTGTGCGCTT +
Preference number: 4 (lower is better)
Translates to: HAWVGLGSSQERTCWLGQADHQS*PAGCAL
Trigger: AAGCGCACACCCCGCCGGGCAGCTCTGATGATCGGC...CTGGCCCAGCCAGCAGGTTCTCTCCTGTGAGCTCCCCAATCCAACCCATGCATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp ATCCGGGTGGCTGGGAGGCCATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGGGGGCTTCTGGCCCTTaGCAGCTCGATCACGCCCTT +
Preference number: 4 (lower is better)
Translates to: IRVAGRPCMGWIGELTGEGASGP*QLDHAL
Trigger: AAGGGCGTGATCGAGCTGGCAAGGGCCAGAAGCCCC...CTCTCCTGTGAGCTCCCCAATCCAACCCATGCATGGCCTCCCAGCCACCCGGAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp GGACCCTCTGAGGACATTTGTGGACAATCCTGGAGAGTATGCCTAGGGCCCAGGCGGGAGGGAGTGCGGTaGACGGAGCCAGGGCGCTTG +
Preference number: 4 (lower is better)
Translates to: GPSEDICGQSWRVCLGPRREGVR*TEPGRL
Trigger: CAAGCGCCCTGGCTCCGTGCACCGCACTCCCTCCCG...CCTGGGCCCTAGGCATACTCTCCAGGATTGTCCACAAATGTCCTCAGAGGGTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp ATCCGGGTGGCTGGGAGGCCATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGTCTCACACCGCAATCTaGGCCGCTGCTGGGCCAAGG +
Preference number: 4 (lower is better)
Translates to: IRVAGRPCMGWIGELTGESHTAI*AAAGPR
Trigger: CCTTGGCCCAGCAGCGGCCCAGATTGCGGTGTGAGA...CTCTCCTGTGAGCTCCCCAATCCAACCCATGCATGGCCTCCCAGCCACCCGGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp TCCTCCTCCCGGGCCTTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAAGGGACCCTTTCCTGGTaGCAGGACGGTGATGTTGGG +
Preference number: 4 (lower is better)
Translates to: SSSRAFFLVKSAFPPSREGTLSW*QDGDVG
Trigger: CCCAACATCACCGTCCTGGCACCAGGAAAGGGTCCC...TTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAAGGCCCGGGAGGAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp GGACCCTCTGAGGACATTTGTGGACAATCCTGGAGAGTATGCCTAGGGCCCAGGCTGCCCGGCGGGGTGTaGGCTTGGCACGGTAGCTCA +
Preference number: 4 (lower is better)
Translates to: GPSEDICGQSWRVCLGPRLPGGV*AWHGSS
Trigger: TGAGCTACCGTGCCAAGCGCACACCCCGCCGGGCAG...CCTGGGCCCTAGGCATACTCTCCAGGATTGTCCACAAATGTCCTCAGAGGGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp CATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGAACCTGCTGGCTGGGCCAGTGCCTAGGGCCCAGGTaGGCGGGCTCTGCCTATGAA +
Preference number: 4 (lower is better)
Translates to: HAWVGLGSSQERTCWLGQCLGPR*AGSAYE
Trigger: TTCATAGGCAGAGCCCGCCCACCTGGGCCCTAGGCA...CTGGCCCAGCCAGCAGGTTCTCTCCTGTGAGCTCCCCAATCCAACCCATGCATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp GTATGCCTAGGGCCCAGGTGGGCGGGCTCTGCCTATGAAGCGAGGGGATTCCCCAGGCCATGCATGGGTTaGATTGGGGAGCTCACAGGA +
Preference number: 4 (lower is better)
Translates to: VCLGPRWAGSAYEARGFPRPCMG*IGELTG
Trigger: TCCTGTGAGCTCCCCAATCCAACCCATGCATGGCCT...GGGGAATCCCCTCGCTTCATAGGCAGAGCCCGCCCACCTGGGCCCTAGGCATAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp GGACCCTCTGAGGACATTTGTGGACAATCCTGGAGAGTATGCCTAGGGCCCAGGGGTCACAAGCCAGCGTaGCCAGAGCCCAGTGGCCCA +
Preference number: 4 (lower is better)
Translates to: GPSEDICGQSWRVCLGPRGHKPA*PEPSGP
Trigger: TGGGCCACTGGGCTCTGGGCACGCTGGCTTGTGACC...CCTGGGCCCTAGGCATACTCTCCAGGATTGTCCACAAATGTCCTCAGAGGGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp GGACCCTCTGAGGACATTTGTGGACAATCCTGGAGAGTATGCCTAGGGCCCAGGTGCTGCCACCCCCTTTaGCTGGCGTCTCGGAGCCCT +
Preference number: 4 (lower is better)
Translates to: GPSEDICGQSWRVCLGPRCCHPL*LASRSP
Trigger: AGGGCTCCGAGACGCCAGGCAAAGGGGGTGGCAGCA...CCTGGGCCCTAGGCATACTCTCCAGGATTGTCCACAAATGTCCTCAGAGGGTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp AAGAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGTTCCCCGGGTTTCCCCTTGGTGGGGGCCTGTaGCTCGGGGTCCACCATTGG +
Preference number: 4 (lower is better)
Translates to: KSAFPPSREQKNQFPGFPLGGGL*LGVHHW
Trigger: CCAATGGTGGACCCCGAGGCACAGGCCCCCACCAAG...GGGAAACCCGGGGAACTGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp GGCCTTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAATTGGCGGGAGGGAGTaGGGTGCACGGAGCCAGGGC +
Preference number: 4 (lower is better)
Translates to: GLLPGEERIPTQQGTEKPIGGRE*GARSQG
Trigger: GCCCTGGCTCCGTGCACCGCACTCCCTCCCGCCAAT...TGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAAGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp CTGCTGGCTCCTGACTTCCTGCCTAAAGGCAAACAAGGAGTCCAAAGCCCGGATCGGAGCCAGGGCGCTTaGGGATCTTGCGCCAGCGTC +
Preference number: 4 (lower is better)
Translates to: LLAPDFLPKGKQGVQSPDRSQGA*GSCASV
Trigger: GACGCTGGCGCAAGATCCCCAAGCGCCCTGGCTCCG...ATCCGGGCTTTGGACTCCTTGTTTGCCTTTAGGCAGGAAGTCAGGAGCCAGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp TTCCCCAGCTCCCTGTCATCTGGCTTTTCTCCCAGCGGCCAGTTCAGTTTCTGGGCCTTTCCCGGGGACTaGGGTGGAGGGATGCAGGAG +
Preference number: 4 (lower is better)
Translates to: FPSSLSSGFSPSGQFSFWAFPGD*GGGMQE
Trigger: CTCCTGCATCCCTCCACCCCAGTCCCCGGGAAAGGC...CCAGAAACTGAACTGGCCGCTGGGAGAAAAGCCAGATGACAGGGAGCTGGGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp ATCCGGGTGGCTGGGAGGCCATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGCTGGGGCAGGGGGTATaGATTTGCGGCTGGATAGCA +
Preference number: 4 (lower is better)
Translates to: IRVAGRPCMGWIGELTGELGQGV*ICGWIA
Trigger: TGCTATCCAGCCGCAAATCCATACCCCCTGCCCCAG...CTCTCCTGTGAGCTCCCCAATCCAACCCATGCATGGCCTCCCAGCCACCCGGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp GAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGTTCCCCGGGTTTCCCTCGGAGATCCGGGTGGCTaGGAGGCCATGCATGGGTTG +
Preference number: 4 (lower is better)
Translates to: ERIPTQQGTEKPVPRVSLGDPGG*EAMHGL
Trigger: CAACCCATGCATGGCCTCCCAGCCACCCGGATCTCC...GAGGGAAACCCGGGGAACTGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR TCA 90 bp GAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGTTCCCCGGGTTTCCCTCTCATCACCACGGGGCTaGAGAGGGGTCTGTAGGGTC +
Preference number: 4 (lower is better)
Translates to: ERIPTQQGTEKPVPRVSLSSPRG*RGVCRV
Trigger: GACCCTACAGACCCCTCTTCAGCCCCGTGGTGATGA...GAGGGAAACCCGGGGAACTGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR TCA 90 bp GGCCTTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCATGGAGGAGTCTCTGGTaGGCCCTCAGCCCCTGGCTG +
Preference number: 4 (lower is better)
Translates to: GLLPGEERIPTQQGTEKPWRSLW*ALSPWL
Trigger: CAGCCAGGGGCTGAGGGCTCACCAGAGACTCCTCCA...TGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAAGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR TCA 90 bp CCCTGCCTGGGAATAGCGAAGTCTGGAAAGTTGGCAGGGTCTCTCTGGGCTGCCCTCCCTCTGAGGATGTaGGGGACTCCATGGAGCCTT +
Preference number: 4 (lower is better)
Translates to: PCLGIAKSGKLAGSLWAALPLRM*GTPWSL
Trigger: AAGGCTCCATGGAGTCCCTCACATCCTCAGAGGGAG...GGCAGCCCAGAGAGACCCTGCCAACTTTCCAGACTTCGCTATTCCCAGGCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR TCA 90 bp ATCCGGGTGGCTGGGAGGCCATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGTGCTGCCTCGGGACTTaGTATGTGACTAGCCAAGCC +
Preference number: 4 (lower is better)
Translates to: IRVAGRPCMGWIGELTGECCLGT*YVTSQA
Trigger: GGCTTGGCTAGTCACATATCAAGTCCCGAGGCAGCA...CTCTCCTGTGAGCTCCCCAATCCAACCCATGCATGGCCTCCCAGCCACCCGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp CATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGAACCTGCTGGCTGGGCCAGTCCCCTACCAGGTACTaGCAGAAGAGGATGGCTGGG +
Preference number: 4 (lower is better)
Translates to: HAWVGLGSSQERTCWLGQSPTRY*QKRMAG
Trigger: CCCAGCCATCCTCTTCTGGCAGTACCTGGTAGGGGA...CTGGCCCAGCCAGCAGGTTCTCTCCTGTGAGCTCCCCAATCCAACCCATGCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp GGCCTTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGGCTGCCAGCTCCCGTaGTCGGTTCTCTGTCTCCCG +
Preference number: 4 (lower is better)
Translates to: GLLPGEERIPTQQGTEKPGCQLP*SVLCLP
Trigger: CGGGAGACAGAGAACCGAGCACGGGAGCTGGCAGCC...TGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAAGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp ATCCGGGTGGCTGGGAGGCCATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGCGGGAACACAGTCCTTaGAGAAGGTGGACACCAGCA +
Preference number: 4 (lower is better)
Translates to: IRVAGRPCMGWIGELTGEREHSP*RRWTPA
Trigger: TGCTGGTGTCCACCTTCTGCAAGGACTGTGTTCCCG...CTCTCCTGTGAGCTCCCCAATCCAACCCATGCATGGCCTCCCAGCCACCCGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp AGAAAAACCAGTTCCCCGGGTTTCCCTCCCTGCCTGGGAATAGCGAAGTCTGGATCTCCTGGCCCGCCCTaGTGGCTCCTGACTTCCTGC +
Preference number: 4 (lower is better)
Translates to: RKTSSPGFPPCLGIAKSGSPGPP*WLLTSC
Trigger: GCAGGAAGTCAGGAGCCAGCAGGGCGGGCCAGGAGA...TCCAGACTTCGCTATTCCCAGGCAGGGAGGGAAACCCGGGGAACTGGTTTTTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp CATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGAACCTGCTGGCTGGGCCAGCCAGGGACCCTTTCCTaGTGCCAGGACGGTGATGTT +
Preference number: 4 (lower is better)
Translates to: HAWVGLGSSQERTCWLGQPGTLS*CQDGDV
Trigger: AACATCACCGTCCTGGCACCAGGAAAGGGTCCCTGG...CTGGCCCAGCCAGCAGGTTCTCTCCTGTGAGCTCCCCAATCCAACCCATGCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp TTCCCCAGCTCCCTGTCATCTGGCTTTTCTCCCAGCGGCCAGTTCAGTTTCTGGGGTTGCCTGTCACTGTaGCTAGCGACAGGAGGCCCG +
Preference number: 4 (lower is better)
Translates to: FPSSLSSGFSPSGQFSFWGCLSL*LATGGP
Trigger: CGGGCCTCCTGTCGCTAGCCACAGTGACAGGCAACC...CCAGAAACTGAACTGGCCGCTGGGAGAAAAGCCAGATGACAGGGAGCTGGGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp ATCTCACACCGCAATCTGGGCCGCTGCTGGGCCAAGGAATACTTAATGTTAAGCGGCGGGGTGTGCGCTTaGCACGGTAGCTCAGGGGCC +
Preference number: 4 (lower is better)
Translates to: ISHRNLGRCWAKEYLMLSGGVCA*HGSSGA
Trigger: GGCCCCTGAGCTACCGTGCCAAGCGCACACCCCGCC...GCTTAACATTAAGTATTCCTTGGCCCAGCAGCGGCCCAGATTGCGGTGTGAGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp CATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGAACCTGCTGGCTGGGCCAGTTTCCACGGGGCTTCTaGCCCTTGCCAGCTCGATCA +
Preference number: 4 (lower is better)
Translates to: HAWVGLGSSQERTCWLGQFPRGF*PLPARS
Trigger: TGATCGAGCTGGCAAGGGCCAGAAGCCCCGTGGAAA...CTGGCCCAGCCAGCAGGTTCTCTCCTGTGAGCTCCCCAATCCAACCCATGCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp TCCTCCTCCCGGGCCTTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAAAGAAGGTCTTCCGCTTaGCCAGCTGCTCCTTTCCAC +
Preference number: 4 (lower is better)
Translates to: SSSRAFFLVKSAFPPSRERRSSA*PAAPFH
Trigger: GTGGAAAGGAGCAGCTGGCCAAGCGGAAGACCTTCT...TTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAAGGCCCGGGAGGAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp GTATGCCTAGGGCCCAGGTGGGCGGGCTCTGCCTATGAAGCGAGGGGATTCCCCATTTGTGGACAATCCTaGAGAGTATGCCTAGGGCCC +
Preference number: 4 (lower is better)
Translates to: VCLGPRWAGSAYEARGFPICGQS*RVCLGP
Trigger: GGGCCCTAGGCATACTCTCCAGGATTGTCCACAAAT...GGGGAATCCCCTCGCTTCATAGGCAGAGCCCGCCCACCTGGGCCCTAGGCATAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306960.4
3UTR CAA 72 bp TTCCCTCCCTGCCTGGGAATAGCGAAGTCTGGAAAGTaGGCAGGGTCTCTCTGGGCTGCCCAGGAAGGTGAC +
Preference number: 4 (lower is better)
Translates to: FPPCLGIAKSGK*AGSLWAAQEGD
Trigger: GTCACCTTCCTGGGCAGCCCAGAGAGACCCTGCCAACTTTCCAGACTTCGCTATTCCCAGGCAGGGAGGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR TCA 90 bp CCCTGCCTGGGAATAGCGAAGTCTGGAAAGTTGGCAGGGTCTCTCTGGGCTGCCTGGACACCAGCACCATaGTGTTGTACGGTGTCCAGG +
Preference number: 4 (lower is better)
Translates to: PCLGIAKSGKLAGSLWAAWTPAP*CCTVSR
Trigger: CCTGGACACCGTACAACATCATGGTGCTGGTGTCCA...GGCAGCCCAGAGAGACCCTGCCAACTTTCCAGACTTCGCTATTCCCAGGCAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp CCCTGCCTGGGAATAGCGAAGTCTGGAAAGTTGGCAGGGTCTCTCTGGGCTGCCCCCGGAAGGCTTTGTTaGAGAGTGCGTAGCACATGG +
Preference number: 4 (lower is better)
Translates to: PCLGIAKSGKLAGSLWAAPGRLC*RVRSTW
Trigger: CCATGTGCTACGCACTCTGCAACAAAGCCTTCCGGG...GGCAGCCCAGAGAGACCCTGCCAACTTTCCAGACTTCGCTATTCCCAGGCAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp AGAAAAACCAGTTCCCCGGGTTTCCCTCCCTGCCTGGGAATAGCGAAGTCTGGAGGCGCTTGGGGATCTTaGGCCAGCGTCTCTTGTCCC +
Preference number: 4 (lower is better)
Translates to: RKTSSPGFPPCLGIAKSGGAWGS*ASVSCP
Trigger: GGGACAAGAGACGCTGGCGCAAGATCCCCAAGCGCC...TCCAGACTTCGCTATTCCCAGGCAGGGAGGGAAACCCGGGGAACTGGTTTTTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp CATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGAACCTGCTGGCTGGGCCAGCGCAATCTGGGCCGCTaGTGGGCCAAGGAATACTTA +
Preference number: 4 (lower is better)
Translates to: HAWVGLGSSQERTCWLGQRNLGR*WAKEYL
Trigger: TAAGTATTCCTTGGCCCAGCAGCGGCCCAGATTGCG...CTGGCCCAGCCAGCAGGTTCTCTCCTGTGAGCTCCCCAATCCAACCCATGCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp GGACCCTCTGAGGACATTTGTGGACAATCCTGGAGAGTATGCCTAGGGCCCAGGTTGGCAGGGTCTCTCTaGGCTGCCCAGGAAGGTGAC +
Preference number: 4 (lower is better)
Translates to: GPSEDICGQSWRVCLGPRLAGSL*AAQEGD
Trigger: GTCACCTTCCTGGGCAGCCCAGAGAGACCCTGCCAA...CCTGGGCCCTAGGCATACTCTCCAGGATTGTCCACAAATGTCCTCAGAGGGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR TCA 90 bp AAGAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGTTCCCCGGGTTTCCCGAGCCCAGTGGCCCATaGGCAGGTACGTGGTATAGA +
Preference number: 4 (lower is better)
Translates to: KSAFPPSREQKNQFPGFPEPSGP*AGTWYR
Trigger: TCTATACCACGTACCTGCTCATGGGCCACTGGGCTC...GGGAAACCCGGGGAACTGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR TCA 90 bp TTCCCCAGCTCCCTGTCATCTGGCTTTTCTCCCAGCGGCCAGTTCAGTTTCTGGAGGCTCCTCTCCCTCTaGGGATGTGAGGGACTCCAT +
Preference number: 4 (lower is better)
Translates to: FPSSLSSGFSPSGQFSFWRLLSL*GCEGLH
Trigger: ATGGAGTCCCTCACATCCTCAGAGGGAGAGGAGCCT...CCAGAAACTGAACTGGCCGCTGGGAGAAAAGCCAGATGACAGGGAGCTGGGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR TCA 90 bp GAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGTTCCCCGGGTTTCCCTCCCACCATTGGCATCTTaGTCACCACTTCGGAGCCAG +
Preference number: 4 (lower is better)
Translates to: ERIPTQQGTEKPVPRVSLPPLAS*SPLRSQ
Trigger: CTGGCTCCGAAGTGGTGATCAAGATGCCAATGGTGG...GAGGGAAACCCGGGGAACTGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR TCA 90 bp CATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGAACCTGCTGGCTGGGCCAGCACCTAGGGACCCTCTaGGGACATTTGTGGACAATC +
Preference number: 4 (lower is better)
Translates to: HAWVGLGSSQERTCWLGQHLGTL*GHLWTI
Trigger: GATTGTCCACAAATGTCCTCAGAGGGTCCCTAGGTG...CTGGCCCAGCCAGCAGGTTCTCTCCTGTGAGCTCCCCAATCCAACCCATGCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR TCA 90 bp CATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGAACCTGCTGGCTGGGCCAGGATAGCAGGCACACTTaGCTCCCACTCCCAGGAAAA +
Preference number: 4 (lower is better)
Translates to: HAWVGLGSSQERTCWLGQDSRHT*LPLPGK
Trigger: TTTTCCTGGGAGTGGGAGTCAAGTGTGCCTGCTATC...CTGGCCCAGCCAGCAGGTTCTCTCCTGTGAGCTCCCCAATCCAACCCATGCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp TTCCCCAGCTCCCTGTCATCTGGCTTTTCTCCCAGCGGCCAGTTCAGTTTCTGGCTGTCTCCCGGTAGATaGGCCAGTAGAGCGTGCACA +
Preference number: 4 (lower is better)
Translates to: FPSSLSSGFSPSGQFSFWLSPGR*ASRACT
Trigger: TGTGCACGCTCTACTGGCGCATCTACCGGGAGACAG...CCAGAAACTGAACTGGCCGCTGGGAGAAAAGCCAGATGACAGGGAGCTGGGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp CTGCTGGCTCCTGACTTCCTGCCTAAAGGCAAACAAGGAGTCCAAAGCCCGGATACCTCTCTGAGCTGCTaGTGCTGCCACCCCCTTTGC +
Preference number: 4 (lower is better)
Translates to: LLAPDFLPKGKQGVQSPDTSLSC*CCHPLC
Trigger: GCAAAGGGGGTGGCAGCAGCAGCAGCTCAGAGAGGT...ATCCGGGCTTTGGACTCCTTGTTTGCCTTTAGGCAGGAAGTCAGGAGCCAGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp AGAAAAACCAGTTCCCCGGGTTTCCCTCCCTGCCTGGGAATAGCGAAGTCTGGATTCAGTTTCTGGCTGTaGCCCCCAGGGGGCACCATC +
Preference number: 4 (lower is better)
Translates to: RKTSSPGFPPCLGIAKSGFSFWL*PPGGTI
Trigger: GATGGTGCCCCCTGGGGGGCACAGCCAGAAACTGAA...TCCAGACTTCGCTATTCCCAGGCAGGGAGGGAAACCCGGGGAACTGGTTTTTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp AGAAAAACCAGTTCCCCGGGTTTCCCTCCCTGCCTGGGAATAGCGAAGTCTGGACAATCCTGGAGAGTATaGCTAGGGCCCAGGTGGGCG +
Preference number: 4 (lower is better)
Translates to: RKTSSPGFPPCLGIAKSGQSWRV*LGPRWA
Trigger: CGCCCACCTGGGCCCTAGGCATACTCTCCAGGATTG...TCCAGACTTCGCTATTCCCAGGCAGGGAGGGAAACCCGGGGAACTGGTTTTTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp GAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGTTCCCCGGGTTTCCCTCCAGGGGGTATGGATTTaGGGCTGGATAGCAGGCACA +
Preference number: 4 (lower is better)
Translates to: ERIPTQQGTEKPVPRVSLQGVWI*GWIAGT
Trigger: TGTGCCTGCTATCCAGCCGCAAATCCATACCCCCTG...GAGGGAAACCCGGGGAACTGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp TTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGTTCGCCACCCCCTTTGCCTaGCGTCTCGGAGCCCTGAAG +
Preference number: 4 (lower is better)
Translates to: FFLVKSAFPPSREQKNQFATPFA*RLGALK
Trigger: CTTCAGGGCTCCGAGACGCCAGGCAAAGGGGGTGGC...GAACTGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp AAGAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGTTCCCCGGGTTTCCCCCTCTTGACTGTATTTaGGGAGCTCCGTGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: KSAFPPSREQKNQFPGFPPLDCI*GAPWGL
Trigger: CAGCCCCCACGGAGCTCCCCAAATACAGTCAAGAGG...GGGAAACCCGGGGAACTGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR TCA 90 bp AGAAAAACCAGTTCCCCGGGTTTCCCTCCCTGCCTGGGAATAGCGAAGTCTGGACCGCCTTCTTCTCCTTaGCCAGCGAGAAGGTCTTCC +
Preference number: 4 (lower is better)
Translates to: RKTSSPGFPPCLGIAKSGPPSSP*PARRSS
Trigger: GGAAGACCTTCTCGCTGGTCAAGGAGAAGAAGGCGG...TCCAGACTTCGCTATTCCCAGGCAGGGAGGGAAACCCGGGGAACTGGTTTTTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp GGACCCTCTGAGGACATTTGTGGACAATCCTGGAGAGTATGCCTAGGGCCCAGGCCAATGAAGGCCACTTaGCAGGGACCCTTTCCTGGT +
Preference number: 4 (lower is better)
Translates to: GPSEDICGQSWRVCLGPRPMKAT*QGPFPG
Trigger: ACCAGGAAAGGGTCCCTGGCAAGTGGCCTTCATTGG...CCTGGGCCCTAGGCATACTCTCCAGGATTGTCCACAAATGTCCTCAGAGGGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp CTGCTGGCTCCTGACTTCCTGCCTAAAGGCAAACAAGGAGTCCAAAGCCCGGATCCGGGTTTCCCTCCCTaGCTGGGAATAGCGAAGTCT +
Preference number: 4 (lower is better)
Translates to: LLAPDFLPKGKQGVQSPDPGFPP*LGIAKS
Trigger: AGACTTCGCTATTCCCAGGCAGGGAGGGAAACCCGG...ATCCGGGCTTTGGACTCCTTGTTTGCCTTTAGGCAGGAAGTCAGGAGCCAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp GGACCCTCTGAGGACATTTGTGGACAATCCTGGAGAGTATGCCTAGGGCCCAGGCTGAAGTGTTCATGGTaGCTAGGTGGGGCTGGGGTT +
Preference number: 4 (lower is better)
Translates to: GPSEDICGQSWRVCLGPRLKCSW*LGGAGV
Trigger: AACCCCAGCCCCACCTAGCCACCATGAACACTTCAG...CCTGGGCCCTAGGCATACTCTCCAGGATTGTCCACAAATGTCCTCAGAGGGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp TTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGTTCGGGGACTATCAGCATTaGCGGGAGGGAGTGCGGTGC +
Preference number: 4 (lower is better)
Translates to: FFLVKSAFPPSREQKNQFGDYQH*REGVRC
Trigger: GCACCGCACTCCCTCCCGCCAATGCTGATAGTCCCC...GAACTGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp ATCTCACACCGCAATCTGGGCCGCTGCTGGGCCAAGGAATACTTAATGTTAAGCAGGACACCTGGCTCCTaGTCCTGTTGCTGCCTCGGG +
Preference number: 4 (lower is better)
Translates to: ISHRNLGRCWAKEYLMLSRTPGS*SCCCLG
Trigger: CCCGAGGCAGCAACAGGACCAGGAGCCAGGTGTCCT...GCTTAACATTAAGTATTCCTTGGCCCAGCAGCGGCCCAGATTGCGGTGTGAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR TCA 90 bp CTGCTGGCTCCTGACTTCCTGCCTAAAGGCAAACAAGGAGTCCAAAGCCCGGATTCGGGACTTGATATGTaGCTAGCCAAGCCGGACCCT +
Preference number: 4 (lower is better)
Translates to: LLAPDFLPKGKQGVQSPDSGLDM*LAKPDP
Trigger: AGGGTCCGGCTTGGCTAGTCACATATCAAGTCCCGA...ATCCGGGCTTTGGACTCCTTGTTTGCCTTTAGGCAGGAAGTCAGGAGCCAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp ATCTCACACCGCAATCTGGGCCGCTGCTGGGCCAAGGAATACTTAATGTTAAGCTTCCGCTTGGCCAGCTaGTCCTTTCCACGGGGCTTC +
Preference number: 4 (lower is better)
Translates to: ISHRNLGRCWAKEYLMLSFRLAS*SFPRGF
Trigger: GAAGCCCCGTGGAAAGGAGCAGCTGGCCAAGCGGAA...GCTTAACATTAAGTATTCCTTGGCCCAGCAGCGGCCCAGATTGCGGTGTGAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp GAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGTTCCCCGGGTTTCCCTCTGGCTCCTGACTTCCTaGCTAAAGGCAAACAAGGAG +
Preference number: 4 (lower is better)
Translates to: ERIPTQQGTEKPVPRVSLWLLTS*LKANKE
Trigger: CTCCTTGTTTGCCTTTAGGCAGGAAGTCAGGAGCCA...GAGGGAAACCCGGGGAACTGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp TTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGTTCTTCATGGTGGCTAGGTaGGGCTGGGGTTGGAGAGCC +
Preference number: 4 (lower is better)
Translates to: FFLVKSAFPPSREQKNQFFMVAR*GWGWRA
Trigger: GGCTCTCCAACCCCAGCCCCACCTAGCCACCATGAA...GAACTGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp AAGAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGTTCCCCGGGTTTCCCCTCGGGGTCCACCATTaGCATCTTGATCACCACTTC +
Preference number: 4 (lower is better)
Translates to: KSAFPPSREQKNQFPGFPLGVHH*HLDHHF
Trigger: GAAGTGGTGATCAAGATGCCAATGGTGGACCCCGAG...GGGAAACCCGGGGAACTGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp CACCGCAATCTGGGCCGCTGCTGGGCCAAGGAATACTTAATGTTAAGCCTTCTTGACAGTCAGGACACCTaGCTCCTGGTCCTGTTGCTG +
Preference number: 4 (lower is better)
Translates to: HRNLGRCWAKEYLMLSLLDSQDT*LLVLLL
Trigger: CAGCAACAGGACCAGGAGCCAGGTGTCCTGACTGTC...AAGAAGGCTTAACATTAAGTATTCCTTGGCCCAGCAGCGGCCCAGATTGCGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp TTCCCCAGCTCCCTGTCATCTGGCTTTTCTCCCAGCGGCCAGTTCAGTTTCTGGGTATGGATTTGCGGCTaGATAGCAGGCACACTTGAC +
Preference number: 4 (lower is better)
Translates to: FPSSLSSGFSPSGQFSFWVWICG*IAGTLD
Trigger: GTCAAGTGTGCCTGCTATCCAGCCGCAAATCCATAC...CCAGAAACTGAACTGGCCGCTGGGAGAAAAGCCAGATGACAGGGAGCTGGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp AGAAAAACCAGTTCCCCGGGTTTCCCTCCCTGCCTGGGAATAGCGAAGTCTGGACTGGCTAGATCTGCATaGAGCAGATCCATCCAGGTG +
Preference number: 4 (lower is better)
Translates to: RKTSSPGFPPCLGIAKSGLARSA*SRSIQV
Trigger: CACCTGGATGGATCTGCTCCATGCAGATCTAGCCAG...TCCAGACTTCGCTATTCCCAGGCAGGGAGGGAAACCCGGGGAACTGGTTTTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp TTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGTTCAGCATGCGGGAGGCCTaGCTAGATCTGCATGGAGCA +
Preference number: 4 (lower is better)
Translates to: FFLVKSAFPPSREQKNQFSMREA*LDLHGA
Trigger: TGCTCCATGCAGATCTAGCCAGGCCTCCCGCATGCT...GAACTGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp CACCGCAATCTGGGCCGCTGCTGGGCCAAGGAATACTTAATGTTAAGCCTTCTTCTGGGAGGCCATGCATaGGTTGGATTGGGGAGCTCA +
Preference number: 4 (lower is better)
Translates to: HRNLGRCWAKEYLMLSLLLGGHA*VGLGSS
Trigger: TGAGCTCCCCAATCCAACCCATGCATGGCCTCCCAG...AAGAAGGCTTAACATTAAGTATTCCTTGGCCCAGCAGCGGCCCAGATTGCGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR TCA 90 bp GGACCCTCTGAGGACATTTGTGGACAATCCTGGAGAGTATGCCTAGGGCCCAGGCCACTCCCAGGAAAATaGTATTGTAGGACAGTCAGG +
Preference number: 4 (lower is better)
Translates to: GPSEDICGQSWRVCLGPRPLPGK*YCRTVR
Trigger: CCTGACTGTCCTACAATATCATTTTCCTGGGAGTGG...CCTGGGCCCTAGGCATACTCTCCAGGATTGTCCACAAATGTCCTCAGAGGGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR GCA 90 bp CTGCTGGCTCCTGACTTCCTGCCTAAAGGCAAACAAGGAGTCCAAAGCCCGGATGGCTTTGTTGCAGAGTaGGTAGCACATGGGGTTGAT +
Preference number: 4 (lower is better)
Translates to: LLAPDFLPKGKQGVQSPDGFVAE*VAHGVD
Trigger: ATCAACCCCATGTGCTACGCACTCTGCAACAAAGCC...ATCCGGGCTTTGGACTCCTTGTTTGCCTTTAGGCAGGAAGTCAGGAGCCAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp CACCGCAATCTGGGCCGCTGCTGGGCCAAGGAATACTTAATGTTAAGCCTTCTTCGAAGTCTGGAAAGTTaGCAGGGTCTCTCTGGGCTG +
Preference number: 4 (lower is better)
Translates to: HRNLGRCWAKEYLMLSLLRSLES*QGLSGL
Trigger: CAGCCCAGAGAGACCCTGCCAACTTTCCAGACTTCG...AAGAAGGCTTAACATTAAGTATTCCTTGGCCCAGCAGCGGCCCAGATTGCGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp ATCTCACACCGCAATCTGGGCCGCTGCTGGGCCAAGGAATACTTAATGTTAAGCAAAGGAAAGAACATTTaGGGCCAGGCTGGGCCTGGA +
Preference number: 4 (lower is better)
Translates to: ISHRNLGRCWAKEYLMLSKGKNI*GQAGPG
Trigger: TCCAGGCCCAGCCTGGCCCCAAATGTTCTTTCCTTT...GCTTAACATTAAGTATTCCTTGGCCCAGCAGCGGCCCAGATTGCGGTGTGAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp GGCCTTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCATGCCCGCTGGTTATGTaGCTTTATTCACAGACTCAG +
Preference number: 4 (lower is better)
Translates to: GLLPGEERIPTQQGTEKPCPLVM*LYSQTQ
Trigger: CTGAGTCTGTGAATAAAGCCACATAACCAGCGGGCA...TGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAAGGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp ATCTCACACCGCAATCTGGGCCGCTGCTGGGCCAAGGAATACTTAATGTTAAGCGGGAATAGCGAAGTCTaGAAAGTTGGCAGGGTCTCT +
Preference number: 4 (lower is better)
Translates to: ISHRNLGRCWAKEYLMLSGNSEV*KVGRVS
Trigger: AGAGACCCTGCCAACTTTCCAGACTTCGCTATTCCC...GCTTAACATTAAGTATTCCTTGGCCCAGCAGCGGCCCAGATTGCGGTGTGAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp CACCGCAATCTGGGCCGCTGCTGGGCCAAGGAATACTTAATGTTAAGCCTTCTTAATCTGGGCCGCTGCTaGGCCAAGGAATACTTAATG +
Preference number: 4 (lower is better)
Translates to: HRNLGRCWAKEYLMLSLLNLGRC*AKEYLM
Trigger: CATTAAGTATTCCTTGGCCCAGCAGCGGCCCAGATT...AAGAAGGCTTAACATTAAGTATTCCTTGGCCCAGCAGCGGCCCAGATTGCGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CCA 90 bp TTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGTTCATGCATGGGTTGGATTaGGGAGCTCACAGGAGAGAA +
Preference number: 4 (lower is better)
Translates to: FFLVKSAFPPSREQKNQFMHGLD*GAHRRE
Trigger: TTCTCTCCTGTGAGCTCCCCAATCCAACCCATGCAT...GAACTGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR TCA 90 bp ATCTCACACCGCAATCTGGGCCGCTGCTGGGCCAAGGAATACTTAATGTTAAGCGTGTCATTGTCTTGCTaGTGCTTGGACATTTGCCTT +
Preference number: 4 (lower is better)
Translates to: ISHRNLGRCWAKEYLMLSVSLSC*CLDICL
Trigger: AAGGCAAATGTCCAAGCATCAGCAAGACAATGACAC...GCTTAACATTAAGTATTCCTTGGCCCAGCAGCGGCCCAGATTGCGGTGTGAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS GCA 90 bp GGCGGGAGGGAGTGCGGTGCACGGAGCCAGGGCGCTTGGGGATCTTaGGCCAGCGTCTCTTGTCCCAGCGGCAAAGCAGCAGCAGGCGAA +
Preference number: 5 (lower is better)
Translates to: GGRECGARSQGAWGS*ASVSCPSGKAAAGE
Trigger: TTCGCCTGCTGCTGCTTTGCCGCTGGGACAAGAGACGCTGGCGCAAGATCCCCAAGCGCCCTGGCTCCGTGCACCGCACTCCCTCCCGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS GCA 90 bp GTGAGCCCTCAGCCCCTGGCTGAGACCTCTCTGAGCTGCTGCTGCTaGCACCCCCTTTGCCTGGCGTCTCGGAGCCCTGAAGGGCTGCCA +
Preference number: 5 (lower is better)
Translates to: VSPQPLAETSLSCCC*HPLCLASRSPEGLP
Trigger: TGGCAGCCCTTCAGGGCTCCGAGACGCCAGGCAAAGGGGGTGGCAGCAGCAGCAGCTCAGAGAGGTCTCAGCCAGGGGCTGAGGGCTCAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306960.4
ENST00000543973.1
CDS-3UTR CAA 90 bp GTATGCCTAGGGCCCAGGTGGGCGGGCTCTGCCTATGAAGCGAGGGGATTCCCCCGGGGCTTCTGGCCCTaGCCAGCTCGATCACGCCCT +
Preference number: 5 (lower is better)
Translates to: VCLGPRWAGSAYEARGFPRGFWP*PARSRP
Trigger: AGGGCGTGATCGAGCTGGCAAGGGCCAGAAGCCCCG...GGGGAATCCCCTCGCTTCATAGGCAGAGCCCGCCCACCTGGGCCCTAGGCATAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CAA 90 bp GTATGCCTAGGGCCCAGGTGGGCGGGCTCTGCCTATGAAGCGAGGGGATTCCCCGGGCGCTTGGGGATCTaGCGCCAGCGTCTCTTGTCC +
Preference number: 5 (lower is better)
Translates to: VCLGPRWAGSAYEARGFPGRLGI*RQRLLS
Trigger: GGACAAGAGACGCTGGCGCAAGATCCCCAAGCGCCC...GGGGAATCCCCTCGCTTCATAGGCAGAGCCCGCCCACCTGGGCCCTAGGCATAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS GCA 90 bp GAGTCTCTGGTGAGCCCTCAGCCCCTGGCTGAGACCTCTCTGAGCTaGTGCTGCTGCCACCCCCTTTGCCTGGCGTCTCGGAGCCCTGAA +
Preference number: 5 (lower is better)
Translates to: ESLVSPQPLAETSLS*CCCHPLCLASRSPE
Trigger: TTCAGGGCTCCGAGACGCCAGGCAAAGGGGGTGGCAGCAGCAGCAGCTCAGAGAGGTCTCAGCCAGGGGCTGAGGGCTCACCAGAGACTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306960.4
ENST00000543973.1
CDS CCA 90 bp ATCAGCATTGGCGGGAGGGAGTGCGGTGCACGGAGCCAGGGCGCTTaGGGATCTTGCGCCAGCGTCTCTTGTCCCAGCGGCAAAGCAGCA +
Preference number: 5 (lower is better)
Translates to: ISIGGRECGARSQGA*GSCASVSCPSGKAA
Trigger: TGCTGCTTTGCCGCTGGGACAAGAGACGCTGGCGCAAGATCCCCAAGCGCCCTGGCTCCGTGCACCGCACTCCCTCCCGCCAATGCTGAT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CAA 90 bp CCCTGCCTGGGAATAGCGAAGTCTGGAAAGTTGGCAGGGTCTCTCTGGGCTGCCACGGAGCCAGGGCGCTaGGGGATCTTGCGCCAGCGT +
Preference number: 5 (lower is better)
Translates to: PCLGIAKSGKLAGSLWAATEPGR*GILRQR
Trigger: ACGCTGGCGCAAGATCCCCAAGCGCCCTGGCTCCGT...GGCAGCCCAGAGAGACCCTGCCAACTTTCCAGACTTCGCTATTCCCAGGCAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS GCA 90 bp GTGGCTAGCGACAGGAGGCCCGTGGTGATCCCAATGAAGGCCACTTaGCAGGGACCCTTTCCTGGTGCCAGGACGGTGATGTTGGGGCTG +
Preference number: 5 (lower is better)
Translates to: VASDRRPVVIPMKAT*QGPFPGARTVMLGL
Trigger: CAGCCCCAACATCACCGTCCTGGCACCAGGAAAGGGTCCCTGGCAAGTGGCCTTCATTGGGATCACCACGGGCCTCCTGTCGCTAGCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000306960.4
ENST00000536524.1
ENST00000543973.1
CDS GCA 90 bp GCCTTCTTCTCCTTGACCAGCGAGAAGGTCTTCCGCTTGGCCAGCTaGTCCTTTCCACGGGGCTTCTGGCCCTTGCCAGCTCGATCACGC +
Preference number: 5 (lower is better)
Translates to: AFFSLTSEKVFRLAS*SFPRGFWPLPARSR
Trigger: GCGTGATCGAGCTGGCAAGGGCCAGAAGCCCCGTGGAAAGGAGCAGCTGGCCAAGCGGAAGACCTTCTCGCTGGTCAAGGAGAAGAAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306960.4
ENST00000543973.1
CDS-3UTR CAA 90 bp CTGCTGGCTCCTGACTTCCTGCCTAAAGGCAAACAAGGAGTCCAAAGCCCGGATCTGCTGCCACCCCCTTaGCCTGGCGTCTCGGAGCCC +
Preference number: 5 (lower is better)
Translates to: LLAPDFLPKGKQGVQSPDLLPPP*PGVSEP
Trigger: GGGCTCCGAGACGCCAGGCAAAGGGGGTGGCAGCAG...ATCCGGGCTTTGGACTCCTTGTTTGCCTTTAGGCAGGAAGTCAGGAGCCAGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CAA 90 bp CATGCATGGGTTGGATTGGGGAGCTCACAGGAGAGAACCTGCTGGCTGGGCCAGAGGGGACTATCAGCATaGGCGGGAGGGAGTGCGGTG +
Preference number: 5 (lower is better)
Translates to: HAWVGLGSSQERTCWLGQRGLSA*AGGSAV
Trigger: CACCGCACTCCCTCCCGCCAATGCTGATAGTCCCCT...CTGGCCCAGCCAGCAGGTTCTCTCCTGTGAGCTCCCCAATCCAACCCATGCATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS CCA 90 bp GAGAAGGTCTTCCGCTTGGCCAGCTGCTCCTTTCCACGGGGCTTCTaGCCCTTGCCAGCTCGATCACGCCCTTTCTTAGTCGGCCTCTTG +
Preference number: 5 (lower is better)
Translates to: EKVFRLASCSFPRGF*PLPARSRPFLVGLL
Trigger: CAAGAGGCCGACTAAGAAAGGGCGTGATCGAGCTGGCAAGGGCCAGAAGCCCCGTGGAAAGGAGCAGCTGGCCAAGCGGAAGACCTTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306960.4
ENST00000543973.1
CDS GCA 90 bp GACGGGAGAGAAGGCGGATACAGGGAGACAAACACCCACACCCACTaGACAGACCCGGCGGCACACACACCCTCACAAAGGCACACTGTT +
Preference number: 5 (lower is better)
Translates to: DGREGGYRETNTHTH*TDPAAHTPSQRHTV
Trigger: AACAGTGTGCCTTTGTGAGGGTGTGTGTGCCGCCGGGTCTGTGCAGTGGGTGTGGGTGTTTGTCTCCCTGTATCCGCCTTCTCTCCCGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000543973.1
CDS-3UTR CAA 90 bp GAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGTTCCCCGGGTTTCCCTCCCCAATGAAGGCCACTaGCCAGGGACCCTTTCCTGG +
Preference number: 5 (lower is better)
Translates to: ERIPTQQGTEKPVPRVSLPNEGH*PGTLSW
Trigger: CCAGGAAAGGGTCCCTGGCAAGTGGCCTTCATTGGG...GAGGGAAACCCGGGGAACTGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CAA 90 bp CCCTGCCTGGGAATAGCGAAGTCTGGAAAGTTGGCAGGGTCTCTCTGGGCTGCCGCCGCCTTCTTCTCCTaGACCAGCGAGAAGGTCTTC +
Preference number: 5 (lower is better)
Translates to: PCLGIAKSGKLAGSLWAAAAFFS*TSEKVF
Trigger: GAAGACCTTCTCGCTGGTCAAGGAGAAGAAGGCGGC...GGCAGCCCAGAGAGACCCTGCCAACTTTCCAGACTTCGCTATTCCCAGGCAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CAA 90 bp GGACCCTCTGAGGACATTTGTGGACAATCCTGGAGAGTATGCCTAGGGCCCAGGTTGCGCCAGCGTCTCTaGTCCCAGCGGCAAAGCAGC +
Preference number: 5 (lower is better)
Translates to: GPSEDICGQSWRVCLGPRLRQRL*SQRQSS
Trigger: GCTGCTTTGCCGCTGGGACAAGAGACGCTGGCGCAA...CCTGGGCCCTAGGCATACTCTCCAGGATTGTCCACAAATGTCCTCAGAGGGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CAA 90 bp CCCTGCCTGGGAATAGCGAAGTCTGGAAAGTTGGCAGGGTCTCTCTGGGCTGCCTGGCTCCTGGTCCTGTaGCTGCCTCGGGACTTGATA +
Preference number: 5 (lower is better)
Translates to: PCLGIAKSGKLAGSLWAAWLLVL*LPRDLI
Trigger: TATCAAGTCCCGAGGCAGCAACAGGACCAGGAGCCA...GGCAGCCCAGAGAGACCCTGCCAACTTTCCAGACTTCGCTATTCCCAGGCAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CAA 90 bp TCCTCCTCCCGGGCCTTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAATCCACCATTGGCATCTaGATCACCACTTCGGAGCCA +
Preference number: 5 (lower is better)
Translates to: SSSRAFFLVKSAFPPSRESTIGI*ITTSEP
Trigger: TGGCTCCGAAGTGGTGATCAAGATGCCAATGGTGGA...TTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAAGGCCCGGGAGGAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CAA 90 bp AAGAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGTTCCCCGGGTTTCCCGAGGCCATGCATGGGTaGGATTGGGGAGCTCACAGG +
Preference number: 5 (lower is better)
Translates to: KSAFPPSREQKNQFPGFPEAMHG*DWGAHR
Trigger: CCTGTGAGCTCCCCAATCCAACCCATGCATGGCCTC...GGGAAACCCGGGGAACTGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CAA 90 bp GAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGTTCCCCGGGTTTCCCTCATGAGTACCAGCAGGTaGCCTGTCACTGTGGCTAGC +
Preference number: 5 (lower is better)
Translates to: ERIPTQQGTEKPVPRVSLMSTSR*PVTVAS
Trigger: GCTAGCCACAGTGACAGGCAACCTGCTGGTACTCAT...GAGGGAAACCCGGGGAACTGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CAA 90 bp TCCTCCTCCCGGGCCTTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAATTCTTAGTCGGCCTCTaGACTGTATTTGGGGAGCTC +
Preference number: 5 (lower is better)
Translates to: SSSRAFFLVKSAFPPSREFLVGL*TVFGEL
Trigger: GAGCTCCCCAAATACAGTCAAGAGGCCGACTAAGAA...TTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAAGGCCCGGGAGGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CAA 90 bp AGAAAAACCAGTTCCCCGGGTTTCCCTCCCTGCCTGGGAATAGCGAAGTCTGGAGCAGGGGGTATGGATTaGCGGCTGGATAGCAGGCAC +
Preference number: 5 (lower is better)
Translates to: RKTSSPGFPPCLGIAKSGAGGMD*RLDSRH
Trigger: GTGCCTGCTATCCAGCCGCAAATCCATACCCCCTGC...TCCAGACTTCGCTATTCCCAGGCAGGGAGGGAAACCCGGGGAACTGGTTTTTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CAA 90 bp TTCCCCAGCTCCCTGTCATCTGGCTTTTCTCCCAGCGGCCAGTTCAGTTTCTGGGAAAGGAAAGAACATTaGGGGCCAGGCTGGGCCTGG +
Preference number: 5 (lower is better)
Translates to: FPSSLSSGFSPSGQFSFWERKEH*GPGWAW
Trigger: CCAGGCCCAGCCTGGCCCCAAATGTTCTTTCCTTTC...CCAGAAACTGAACTGGCCGCTGGGAGAAAAGCCAGATGACAGGGAGCTGGGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CAA 90 bp GGCCTTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGCGAAGTCTGGAAAGTaGGCAGGGTCTCTCTGGGCT +
Preference number: 5 (lower is better)
Translates to: GLLPGEERIPTQQGTEKPAKSGK*AGSLWA
Trigger: AGCCCAGAGAGACCCTGCCAACTTTCCAGACTTCGC...TGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAAGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CAA 90 bp TTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCAGTTCTCGGGAACACAGTCCTaGCAGAAGGTGGACACCAGC +
Preference number: 5 (lower is better)
Translates to: FFLVKSAFPPSREQKNQFSGTQS*QKVDTS
Trigger: GCTGGTGTCCACCTTCTGCAAGGACTGTGTTCCCGA...GAACTGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CAA 90 bp AGAAAAACCAGTTCCCCGGGTTTCCCTCCCTGCCTGGGAATAGCGAAGTCTGGAGTCTTGAGCTCCGTGTaGACCTTGAAAGAGATGAGT +
Preference number: 5 (lower is better)
Translates to: RKTSSPGFPPCLGIAKSGVLSSV*TLKEMS
Trigger: ACTCATCTCTTTCAAGGTCAACACGGAGCTCAAGAC...TCCAGACTTCGCTATTCCCAGGCAGGGAGGGAAACCCGGGGAACTGGTTTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CAA 90 bp AGAAAAACCAGTTCCCCGGGTTTCCCTCCCTGCCTGGGAATAGCGAAGTCTGGATCACAGACTCAGCACTaGCTGAGGATGAAAGGAAAG +
Preference number: 5 (lower is better)
Translates to: RKTSSPGFPPCLGIAKSGSQTQH*LRMKGK
Trigger: CTTTCCTTTCATCCTCAGCAAGTGCTGAGTCTGTGA...TCCAGACTTCGCTATTCCCAGGCAGGGAGGGAAACCCGGGGAACTGGTTTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CAA 90 bp CACCGCAATCTGGGCCGCTGCTGGGCCAAGGAATACTTAATGTTAAGCCTTCTTAGCTCCGTGTTGACCTaGAAAGAGATGAGTACCAGC +
Preference number: 5 (lower is better)
Translates to: HRNLGRCWAKEYLMLSLLSSVLT*KEMSTS
Trigger: GCTGGTACTCATCTCTTTCAAGGTCAACACGGAGCT...AAGAAGGCTTAACATTAAGTATTCCTTGGCCCAGCAGCGGCCCAGATTGCGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS-3UTR CAA 90 bp GGCCTTCTTCCTGGTGAAGAGCGCATTCCCACCCAGCAGGGAACAGAAAAACCATCCAGTGTCATTGTCTaGCTGATGCTTGGACATTTG +
Preference number: 5 (lower is better)
Translates to: GLLPGEERIPTQQGTEKPSSVIV*LMLGHL
Trigger: CAAATGTCCAAGCATCAGCAAGACAATGACACTGGA...TGGTTTTTCTGTTCCCTGCTGGGTGGGAATGCGCTCTTCACCAGGAAGAAGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS CCA 72 bp GGCGGGAGGGAGTGCGGTGCACGGAGCCAGGGCGCTTaGGGATCTTGCGCCAGCGTCTCTTGTCCCAGCGGC +
Preference number: 6 (lower is better)
Translates to: GGRECGARSQGA*GSCASVSCPSG
Trigger: GCCGCTGGGACAAGAGACGCTGGCGCAAGATCCCCAAGCGCCCTGGCTCCGTGCACCGCACTCCCTCCCGCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS GCA 72 bp AGGCCAGGCCGATCATCAGAGCTGCCCGGCGGGGTGTaGGCTTGGCACGGTAGCTCAGGGGCCGAGTCACGG +
Preference number: 6 (lower is better)
Translates to: RPGRSSELPGGV*AWHGSSGAESR
Trigger: CCGTGACTCGGCCCCTGAGCTACCGTGCCAAGCGCACACCCCGCCGGGCAGCTCTGATGATCGGCCTGGCCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306960.4
ENST00000543973.1
CDS CAA 72 bp TGGCGGGAGGGAGTGCGGTGCACGGAGCCAGGGCGCTaGGGGATCTTGCGCCAGCGTCTCTTGTCCCAGCGG +
Preference number: 6 (lower is better)
Translates to: WREGVRCTEPGR*GILRQRLLSQR
Trigger: CCGCTGGGACAAGAGACGCTGGCGCAAGATCCCCAAGCGCCCTGGCTCCGTGCACCGCACTCCCTCCCGCCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS CAA 90 bp TGGCGGGAGGGAGTGCGGTGCACGGAGCCAGGGCGCTTGGGGATCTaGCGCCAGCGTCTCTTGTCCCAGCGGCAAAGCAGCAGCAGGCGA +
Preference number: 6 (lower is better)
Translates to: WREGVRCTEPGRLGI*RQRLLSQRQSSSRR
Trigger: TCGCCTGCTGCTGCTTTGCCGCTGGGACAAGAGACGCTGGCGCAAGATCCCCAAGCGCCCTGGCTCCGTGCACCGCACTCCCTCCCGCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS GCA 72 bp GTGAGCCCTCAGCCCCTGGCTGAGACCTCTCTGAGCTaGTGCTGCTGCCACCCCCTTTGCCTGGCGTCTCGG +
Preference number: 6 (lower is better)
Translates to: VSPQPLAETSLS*CCCHPLCLASR
Trigger: CCGAGACGCCAGGCAAAGGGGGTGGCAGCAGCAGCAGCTCAGAGAGGTCTCAGCCAGGGGCTGAGGGCTCAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306960.4
ENST00000543973.1
CDS CCA 72 bp GGCCGATCATCAGAGCTGCCCGGCGGGGTGTGCGCTTaGCACGGTAGCTCAGGGGCCGAGTCACGGAGAAGT +
Preference number: 6 (lower is better)
Translates to: GRSSELPGGVCA*HGSSGAESRRS
Trigger: ACTTCTCCGTGACTCGGCCCCTGAGCTACCGTGCCAAGCGCACACCCCGCCGGGCAGCTCTGATGATCGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306960.4
ENST00000543973.1
CDS CAA 72 bp TGGGGTGGAGGGATGCAGGAGAGGGGACTATCAGCATaGGCGGGAGGGAGTGCGGTGCACGGAGCCAGGGCG +
Preference number: 6 (lower is better)
Translates to: WGGGMQERGLSA*AGGSAVHGARA
Trigger: CGCCCTGGCTCCGTGCACCGCACTCCCTCCCGCCAATGCTGATAGTCCCCTCTCCTGCATCCCTCCACCCCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS CAA 90 bp CGGTGCACGGAGCCAGGGCGCTTGGGGATCTTGCGCCAGCGTCTCTaGTCCCAGCGGCAAAGCAGCAGCAGGCGAAAGGTGTCCCGGAAG +
Preference number: 6 (lower is better)
Translates to: RCTEPGRLGILRQRL*SQRQSSSRRKVSRK
Trigger: CTTCCGGGACACCTTTCGCCTGCTGCTGCTTTGCCGCTGGGACAAGAGACGCTGGCGCAAGATCCCCAAGCGCCCTGGCTCCGTGCACCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306960.4
ENST00000543973.1
CDS GCA 72 bp GAGACCTCTCTGAGCTGCTGCTGCTGCCACCCCCTTTaGCTGGCGTCTCGGAGCCCTGAAGGGCTGCCAGCT +
Preference number: 6 (lower is better)
Translates to: ETSLSCCCCHPL*LASRSPEGLPA
Trigger: AGCTGGCAGCCCTTCAGGGCTCCGAGACGCCAGGCAAAGGGGGTGGCAGCAGCAGCAGCTCAGAGAGGTCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000306960.4
ENST00000543973.1
CDS GCA 72 bp CAGCCCCTGGCTGAGACCTCTCTGAGCTGCTGCTGCTaGCACCCCCTTTGCCTGGCGTCTCGGAGCCCTGAA +
Preference number: 6 (lower is better)
Translates to: QPLAETSLSCCC*HPLCLASRSPE
Trigger: TTCAGGGCTCCGAGACGCCAGGCAAAGGGGGTGGCAGCAGCAGCAGCTCAGAGAGGTCTCAGCCAGGGGCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306960.4
ENST00000543973.1
CDS GCA 72 bp AGAGGGGACTATCAGCATTGGCGGGAGGGAGTGCGGTaGACGGAGCCAGGGCGCTTGGGGATCTTGCGCCAG +
Preference number: 6 (lower is better)
Translates to: RGDYQHWREGVR*TEPGRLGILRQ
Trigger: CTGGCGCAAGATCCCCAAGCGCCCTGGCTCCGTGCACCGCACTCCCTCCCGCCAATGCTGATAGTCCCCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS GCA 72 bp GCAGGAGAGGGGACTATCAGCATTGGCGGGAGGGAGTaGGGTGCACGGAGCCAGGGCGCTTGGGGATCTTGC +
Preference number: 6 (lower is better)
Translates to: AGEGTISIGGRE*GARSQGAWGSC
Trigger: GCAAGATCCCCAAGCGCCCTGGCTCCGTGCACCGCACTCCCTCCCGCCAATGCTGATAGTCCCCTCTCCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS CAA 90 bp TATCAGCATTGGCGGGAGGGAGTGCGGTGCACGGAGCCAGGGCGCTaGGGGATCTTGCGCCAGCGTCTCTTGTCCCAGCGGCAAAGCAGC +
Preference number: 6 (lower is better)
Translates to: YQHWREGVRCTEPGR*GILRQRLLSQRQSS
Trigger: GCTGCTTTGCCGCTGGGACAAGAGACGCTGGCGCAAGATCCCCAAGCGCCCTGGCTCCGTGCACCGCACTCCCTCCCGCCAATGCTGATA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000306960.4
CDS GCA 72 bp AAAGGAAACCAGCCAGGCCAGGCCGATCATCAGAGCTaGCCGGCGGGGTGTGCGCTTGGCACGGTAGCTCAG +
Preference number: 6 (lower is better)
Translates to: KGNQPGQADHQS*PAGCALGTVAQ
Trigger: CTGAGCTACCGTGCCAAGCGCACACCCCGCCGGGCAGCTCTGATGATCGGCCTGGCCTGGCTGGTTTCCTTT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306960.4
ENST00000543973.1
CDS CCA 72 bp AGCAGCCTGATTCAGTCCATCTTGGGGGAGCTGAGGTaGACGGGGGTGGTGGGTTTCAGGGTGCCCACGGGG +
Preference number: 6 (lower is better)
Translates to: SSLIQSILGELR*TGVVGFRVPTG
Trigger: CCCCGTGGGCACCCTGAAACCCACCACCCCCGTCCACCTCAGCTCCCCCAAGATGGACTGAATCAGGCTGCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000543973.1
CDS CAA 72 bp GAGCCAGGGCGCTTGGGGATCTTGCGCCAGCGTCTCTaGTCCCAGCGGCAAAGCAGCAGCAGGCGAAAGGTG +
Preference number: 6 (lower is better)
Translates to: EPGRLGILRQRL*SQRQSSSRRKV
Trigger: CACCTTTCGCCTGCTGCTGCTTTGCCGCTGGGACAAGAGACGCTGGCGCAAGATCCCCAAGCGCCCTGGCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306960.4
ENST00000543973.1
CDS GCA 72 bp TCCTTGACCAGCGAGAAGGTCTTCCGCTTGGCCAGCTaGTCCTTTCCACGGGGCTTCTGGCCCTTGCCAGCT +
Preference number: 6 (lower is better)
Translates to: SLTSEKVFRLAS*SFPRGFWPLPA
Trigger: AGCTGGCAAGGGCCAGAAGCCCCGTGGAAAGGAGCAGCTGGCCAAGCGGAAGACCTTCTCGCTGGTCAAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306960.4
ENST00000543973.1
CDS CAA 72 bp TTGGCCAGCTGCTCCTTTCCACGGGGCTTCTGGCCCTaGCCAGCTCGATCACGCCCTTTCTTAGTCGGCCTC +
Preference number: 6 (lower is better)
Translates to: LASCSFPRGFWP*PARSRPFLVGL
Trigger: GAGGCCGACTAAGAAAGGGCGTGATCGAGCTGGCAAGGGCCAGAAGCCCCGTGGAAAGGAGCAGCTGGCCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306960.4
ENST00000543973.1
CDS CAA 72 bp AGGATGGCACTCAGGGTCCGAGCCGCCTTCTTCTCCTaGACCAGCGAGAAGGTCTTCCGCTTGGCCAGCTGC +
Preference number: 6 (lower is better)
Translates to: RMALRVRAAFFS*TSEKVFRLASC
Trigger: GCAGCTGGCCAAGCGGAAGACCTTCTCGCTGGTCAAGGAGAAGAAGGCGGCTCGGACCCTGAGTGCCATCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306960.4
ENST00000543973.1
CDS GCA 72 bp CCACCCAACCTTAGAGCCCCCAGCCCCTGTGCACCATaGCCCAACACACATGCCCTGGTATTCACATGCCTG +
Preference number: 6 (lower is better)
Translates to: PPNLRAPSPCAP*PNTHALVFTCL
Trigger: CAGGCATGTGAATACCAGGGCATGTGTGTTGGGGCATGGTGCACAGGGGCTGGGGGCTCTAAGGTTGGGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000543973.1
CDS CCA 72 bp ATCACGCCCTTTCTTAGTCGGCCTCTTGACTGTATTTaGGGAGCTCCGTGGGGGCTGCTTGGTGGGGGCCTG +
Preference number: 6 (lower is better)
Translates to: ITPFLSRPLDCI*GAPWGLLGGGL
Trigger: CAGGCCCCCACCAAGCAGCCCCCACGGAGCTCCCCAAATACAGTCAAGAGGCCGACTAAGAAAGGGCGTGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000306960.4
ENST00000543973.1
CDS CAA 90 bp GTCTTCCGCTTGGCCAGCTGCTCCTTTCCACGGGGCTTCTGGCCCTaGCCAGCTCGATCACGCCCTTTCTTAGTCGGCCTCTTGACTGTA +
Preference number: 6 (lower is better)
Translates to: VFRLASCSFPRGFWP*PARSRPFLVGLLTV
Trigger: TACAGTCAAGAGGCCGACTAAGAAAGGGCGTGATCGAGCTGGCAAGGGCCAGAAGCCCCGTGGAAAGGAGCAGCTGGCCAAGCGGAAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306960.4
ENST00000543973.1
CDS CAA 72 bp CTTCTCTATCTGGCCAGCAGCCTGATTCAGTCCATCTaGGGGGAGCTGAGGTGGACGGGGGTGGTGGGTTTC +
Preference number: 6 (lower is better)
Translates to: LLYLASSLIQSI*GELRWTGVVGF
Trigger: GAAACCCACCACCCCCGTCCACCTCAGCTCCCCCAAGATGGACTGAATCAGGCTGCTGGCCAGATAGAGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000543973.1
CDS CAA 90 bp GTCTTGAGCTCCGTGTTGACCTTGAAAGAGATGAGTACCAGCAGGTaGCCTGTCACTGTGGCTAGCGACAGGAGGCCCGTGGTGATCCCA +
Preference number: 6 (lower is better)
Translates to: VLSSVLTLKEMSTSR*PVTVASDRRPVVIP
Trigger: TGGGATCACCACGGGCCTCCTGTCGCTAGCCACAGTGACAGGCAACCTGCTGGTACTCATCTCTTTCAAGGTCAACACGGAGCTCAAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000306960.4
ENST00000536524.1
ENST00000543973.1
CDS CAA 72 bp TCCGTGTTGACCTTGAAAGAGATGAGTACCAGCAGGTaGCCTGTCACTGTGGCTAGCGACAGGAGGCCCGTG +
Preference number: 6 (lower is better)
Translates to: SVLTLKEMSTSR*PVTVASDRRPV
Trigger: CACGGGCCTCCTGTCGCTAGCCACAGTGACAGGCAACCTGCTGGTACTCATCTCTTTCAAGGTCAACACGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000306960.4
ENST00000536524.1
ENST00000543973.1