Pregenerated sensors for CEP19 (Homo sapiens)
Ensembl gene IDs: ENSG00000174007Ensembl transcript IDs: ENST00000399942.4, ENST00000409690.5
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TCTACAGTAATATATGCTCTGGCCTTCTTTAGCCTTTATCATGCATTTGGCACTGCTCATCGCCCAGGCTaGAGTACAATGGCGCGATCT | + |
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Preference number: 2 (lower is better) Translates to: STVIYALAFFSLYHAFGTAHRPG*STMARS Trigger: AGATCGCGCCATTGTACTCCAGCCTGGGCGATGAGC...AGTGCCAAATGCATGATAAAGGCTAAAGAAGGCCAGAGCATATATTACTGTAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| 3UTR-3UTR GCA 90 bp | TTTCGCAATGTCTTTAGTATGTATTTCCCGATACCGGAGGGGCAGAATTCCCCCCACCTACATAGTAGATaGTTTAAATGTCCTGGTTTT | + |
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Preference number: 2 (lower is better) Translates to: FRNVFSMYFPIPEGQNSPHLHSR*FKCPGF Trigger: AAAACCAGGACATTTAAAGCATCTACTATGTAGGTG...GGGGGAATTCTGCCCCTCCGGTATCGGGAAATACATACTAAAGACATTGCGAAA 42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| 3UTR-3UTR GCA 90 bp | TTATGGGAAGAGGTTCAGCGTTTCGCAATGTCTTTAGTATGTATTTCCCGATACTTCCCATACTCCTCATaGACCTACATAGTAGATGCT | + |
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Preference number: 2 (lower is better) Translates to: LWEEVQRFAMSLVCISRYFPYSS*TYIVDA Trigger: AGCATCTACTATGTAGGTGCATGAGGAGTATGGGAA...GTATCGGGAAATACATACTAAAGACATTGCGAAACGCTGAACCTCTTCCCATAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| 3UTR-3UTR CAA 90 bp | TTTCGCAATGTCTTTAGTATGTATTTCCCGATACCGGAGGGGCAGAATTCCCCCGCCTTTATCATGCATTaGGCACTAATGTTTGTGTTG | + |
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Preference number: 3 (lower is better) Translates to: FRNVFSMYFPIPEGQNSPAFIMH*ALMFVL Trigger: CAACACAAACATTAGTGCCAAATGCATGATAAAGGC...GGGGGAATTCTGCCCCTCCGGTATCGGGAAATACATACTAAAGACATTGCGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR TCA 90 bp | TTTCGCAATGTCTTTAGTATGTATTTCCCGATACCGGAGGGGCAGAATTCCCCCGACGAGCCCGAGGGGTaGACTCCCCGGCGGGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: FRNVFSMYFPIPEGQNSPDEPEG*TPRREA Trigger: GGCCTCCCGCCGGGGAGTTCACCCCTCGGGCTCGTC...GGGGGAATTCTGCCCCTCCGGTATCGGGAAATACATACTAAAGACATTGCGAAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR TCA 90 bp | GTAAGCTCCTTAAAGGCAGATTCCTTTATTCTGTTTTTCCCATACTCCTCATGCGACGAGCCCGAGGGGTaGACTCCCCGGCGGGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: VSSLKADSFILFFPYSSCDEPEG*TPRREA Trigger: GGCCTCCCGCCGGGGAGTTCACCCCTCGGGCTCGTC...GCATGAGGAGTATGGGAAAAACAGAATAAAGGAATCTGCCTTTAAGGAGCTTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS-3UTR GCA 90 bp | ACCCGGCATGATTGTAAGCTCCTTAAAGGCAGATTCCTTTATTCTGTTTTTCCCGGCGGAGCCTGGCGCTaGAGGAAGAGGCGACAGCCA | + |
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Preference number: 4 (lower is better) Translates to: TRHDCKLLKGRFLYSVFPGGAWR*RKRRQP Trigger: TGGCTGTCGCCTCTTCCTGCAGCGCCAGGCTCCGCC...GGGAAAAACAGAATAAAGGAATCTGCCTTTAAGGAGCTTACAATCATGCCGGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS-3UTR CCA 90 bp | ACCCGGCATGATTGTAAGCTCCTTAAAGGCAGATTCCTTTATTCTGTTTTTCCCAGACCGGGCGGAGCCTaGCGCTGCAGGAAGAGGCGA | + |
|
Preference number: 4 (lower is better) Translates to: TRHDCKLLKGRFLYSVFPRPGGA*RCRKRR Trigger: TCGCCTCTTCCTGCAGCGCCAGGCTCCGCCCGGTCT...GGGAAAAACAGAATAAAGGAATCTGCCTTTAAGGAGCTTACAATCATGCCGGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS-3UTR TCA 90 bp | TCTACAGTAATATATGCTCTGGCCTTCTTTAGCCTTTATCATGCATTTGGCACTCCCCTAAGCCGACTGTaGGACCGGGCGGAGCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: STVIYALAFFSLYHAFGTPLSRL*DRAEPG Trigger: GCCAGGCTCCGCCCGGTCTCACAGTCGGCTTAGGGG...AGTGCCAAATGCATGATAAAGGCTAAAGAAGGCCAGAGCATATATTACTGTAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR GCA 90 bp | TTATGGGAAGAGGTTCAGCGTTTCGCAATGTCTTTAGTATGTATTTCCCGATACGGCGGAGCCTGGCGCTaGAGGAAGAGGCGACAGCCA | + |
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Preference number: 4 (lower is better) Translates to: LWEEVQRFAMSLVCISRYGGAWR*RKRRQP Trigger: TGGCTGTCGCCTCTTCCTGCAGCGCCAGGCTCCGCC...GTATCGGGAAATACATACTAAAGACATTGCGAAACGCTGAACCTCTTCCCATAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR CCA 90 bp | TTATGGGAAGAGGTTCAGCGTTTCGCAATGTCTTTAGTATGTATTTCCCGATACGGTCCCGGCGAGCGCTaGCCTAGCGGTTTCCACAGC | + |
|
Preference number: 4 (lower is better) Translates to: LWEEVQRFAMSLVCISRYGPGER*PSGFHS Trigger: GCTGTGGAAACCGCTAGGCCAGCGCTCGCCGGGACC...GTATCGGGAAATACATACTAAAGACATTGCGAAACGCTGAACCTCTTCCCATAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR TCA 90 bp | ATTCTGTTTTTCCCATACTCCTCATGCACCTACATAGTAGATGCTTTAAATGTCCCCCTAAGCCGACTGTaGGACCGGGCGGAGCCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: ILFFPYSSCTYIVDALNVPLSRL*DRAEPG Trigger: GCCAGGCTCCGCCCGGTCTCACAGTCGGCTTAGGGG...GACATTTAAAGCATCTACTATGTAGGTGCATGAGGAGTATGGGAAAAACAGAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS-3UTR CCA 90 bp | AAGGCAGATTCCTTTATTCTGTTTTTCCCATACTCCTCATGCACCTACATAGTAGGTCCCGGCGAGCGCTaGCCTAGCGGTTTCCACAGC | + |
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Preference number: 4 (lower is better) Translates to: KADSFILFFPYSSCTYIVGPGER*PSGFHS Trigger: GCTGTGGAAACCGCTAGGCCAGCGCTCGCCGGGACC...TACTATGTAGGTGCATGAGGAGTATGGGAAAAACAGAATAAAGGAATCTGCCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS-3UTR CCA 90 bp | ATTCTGTTTTTCCCATACTCCTCATGCACCTACATAGTAGATGCTTTAAATGTCAGACCGGGCGGAGCCTaGCGCTGCAGGAAGAGGCGA | + |
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Preference number: 4 (lower is better) Translates to: ILFFPYSSCTYIVDALNVRPGGA*RCRKRR Trigger: TCGCCTCTTCCTGCAGCGCCAGGCTCCGCCCGGTCT...GACATTTAAAGCATCTACTATGTAGGTGCATGAGGAGTATGGGAAAAACAGAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS-3UTR CCA 90 bp | TTATGGGAAGAGGTTCAGCGTTTCGCAATGTCTTTAGTATGTATTTCCCGATACGCTCATCGCCCAGGCTaGAGTACAATGGCGCGATCT | + |
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Preference number: 4 (lower is better) Translates to: LWEEVQRFAMSLVCISRYAHRPG*STMARS Trigger: AGATCGCGCCATTGTACTCCAGCCTGGGCGATGAGC...GTATCGGGAAATACATACTAAAGACATTGCGAAACGCTGAACCTCTTCCCATAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR TCA 90 bp | TTTCGCAATGTCTTTAGTATGTATTTCCCGATACCGGAGGGGCAGAATTCCCCCGCTTTTCACAGGTTTTaGCATCTTCCAGTCAGATTG | + |
|
Preference number: 4 (lower is better) Translates to: FRNVFSMYFPIPEGQNSPAFHRF*HLPVRL Trigger: CAATCTGACTGGAAGATGTCAAAACCTGTGAAAAGC...GGGGGAATTCTGCCCCTCCGGTATCGGGAAATACATACTAAAGACATTGCGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR GCA 90 bp | TTTCGCAATGTCTTTAGTATGTATTTCCCGATACCGGAGGGGCAGAATTCCCCCTTCCCATACTCCTCATaGACCTACATAGTAGATGCT | + |
|
Preference number: 4 (lower is better) Translates to: FRNVFSMYFPIPEGQNSPFPYSS*TYIVDA Trigger: AGCATCTACTATGTAGGTGCATGAGGAGTATGGGAA...GGGGGAATTCTGCCCCTCCGGTATCGGGAAATACATACTAAAGACATTGCGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR CCA 90 bp | ACCCGGCATGATTGTAAGCTCCTTAAAGGCAGATTCCTTTATTCTGTTTTTCCCCTAAACAACCAGGAGTaGGTTTTTCCACCCAACCGC | + |
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Preference number: 4 (lower is better) Translates to: TRHDCKLLKGRFLYSVFPLNNQE*VFPPNR Trigger: GCGGTTGGGTGGAAAAACCCACTCCTGGTTGTTTAG...GGGAAAAACAGAATAAAGGAATCTGCCTTTAAGGAGCTTACAATCATGCCGGGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS-3UTR CCA 90 bp | ATTCTGTTTTTCCCATACTCCTCATGCACCTACATAGTAGATGCTTTAAATGTCGCTCATCGCCCAGGCTaGAGTACAATGGCGCGATCT | + |
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Preference number: 4 (lower is better) Translates to: ILFFPYSSCTYIVDALNVAHRPG*STMARS Trigger: AGATCGCGCCATTGTACTCCAGCCTGGGCGATGAGC...GACATTTAAAGCATCTACTATGTAGGTGCATGAGGAGTATGGGAAAAACAGAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS-3UTR TCA 90 bp | TCTACAGTAATATATGCTCTGGCCTTCTTTAGCCTTTATCATGCATTTGGCACTTTGCAGATCCATTCATaGACAGGCCTAAACTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: STVIYALAFFSLYHAFGTLQIHS*TGLNWQ Trigger: CTGCCAGTTTAGGCCTGTTCATGAATGGATCTGCAA...AGTGCCAAATGCATGATAAAGGCTAAAGAAGGCCAGAGCATATATTACTGTAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR GCA 90 bp | ACCCGGCATGATTGTAAGCTCCTTAAAGGCAGATTCCTTTATTCTGTTTTTCCCTTCCCATACTCCTCATaGACCTACATAGTAGATGCT | + |
|
Preference number: 4 (lower is better) Translates to: TRHDCKLLKGRFLYSVFPFPYSS*TYIVDA Trigger: AGCATCTACTATGTAGGTGCATGAGGAGTATGGGAA...GGGAAAAACAGAATAAAGGAATCTGCCTTTAAGGAGCTTACAATCATGCCGGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS-3UTR CCA 90 bp | ACCCGGCATGATTGTAAGCTCCTTAAAGGCAGATTCCTTTATTCTGTTTTTCCCCAGTTGATCGTCCTGTaGAAATTCAACCTCAATGTC | + |
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Preference number: 4 (lower is better) Translates to: TRHDCKLLKGRFLYSVFPQLIVL*KFNLNV Trigger: GACATTGAGGTTGAATTTCCACAGGACGATCAACTG...GGGAAAAACAGAATAAAGGAATCTGCCTTTAAGGAGCTTACAATCATGCCGGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS-3UTR CCA 90 bp | GTAAGCTCCTTAAAGGCAGATTCCTTTATTCTGTTTTTCCCATACTCCTCATGCACTGGCATAATGCGCTaGCGAATTTTCCCCTTGATT | + |
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Preference number: 4 (lower is better) Translates to: VSSLKADSFILFFPYSSCTGIMR*RIFPLI Trigger: AATCAAGGGGAAAATTCGCCAGCGCATTATGCCAGT...GCATGAGGAGTATGGGAAAAACAGAATAAAGGAATCTGCCTTTAAGGAGCTTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR TCA 90 bp | ATTCTGTTTTTCCCATACTCCTCATGCACCTACATAGTAGATGCTTTAAATGTCAGAGGAATACAGAAATaGCATCGTCTGCAGGCCAAC | + |
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Preference number: 4 (lower is better) Translates to: ILFFPYSSCTYIVDALNVRGIQK*HRLQAN Trigger: GTTGGCCTGCAGACGATGTCATTTCTGTATTCCTCT...GACATTTAAAGCATCTACTATGTAGGTGCATGAGGAGTATGGGAAAAACAGAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS-3UTR TCA 90 bp | TTATGGGAAGAGGTTCAGCGTTTCGCAATGTCTTTAGTATGTATTTCCCGATACATAATAGCTGGAGGCTaGAACCTAATCCCACATTTC | + |
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Preference number: 4 (lower is better) Translates to: LWEEVQRFAMSLVCISRYIIAGG*NLIPHF Trigger: GAAATGTGGGATTAGGTTTCAGCCTCCAGCTATTAT...GTATCGGGAAATACATACTAAAGACATTGCGAAACGCTGAACCTCTTCCCATAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR GCA 90 bp | GTAAGCTCCTTAAAGGCAGATTCCTTTATTCTGTTTTTCCCATACTCCTCATGCAGAAATGACATCGTCTaGAGGCCAACGTCTAAACAA | + |
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Preference number: 4 (lower is better) Translates to: VSSLKADSFILFFPYSSCRNDIV*RPTSKQ Trigger: TTGTTTAGACGTTGGCCTGCAGACGATGTCATTTCT...GCATGAGGAGTATGGGAAAAACAGAATAAAGGAATCTGCCTTTAAGGAGCTTAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS-3UTR GCA 90 bp | ATTCTGTTTTTCCCATACTCCTCATGCACCTACATAGTAGATGCTTTAAATGTCTTGTTCCATTGTTTCTaGCAGACTCTGCCCCGACAA | + |
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Preference number: 4 (lower is better) Translates to: ILFFPYSSCTYIVDALNVLFHCF*QTLPRQ Trigger: TTGTCGGGGCAGAGTCTGGCAGAAACAATGGAACAA...GACATTTAAAGCATCTACTATGTAGGTGCATGAGGAGTATGGGAAAAACAGAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS-3UTR GCA 90 bp | GTAAGCTCCTTAAAGGCAGATTCCTTTATTCTGTTTTTCCCATACTCCTCATGCAGCTGTAGGGAATTTTaGAGGGTACTCTTTTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: VSSLKADSFILFFPYSSCSCREF*RVLFSR Trigger: TCTGGAAAAGAGTACCCTGCAAAATTCCCTACAGCT...GCATGAGGAGTATGGGAAAAACAGAATAAAGGAATCTGCCTTTAAGGAGCTTAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR GCA 90 bp | TCTACAGTAATATATGCTCTGGCCTTCTTTAGCCTTTATCATGCATTTGGCACTCAAGTGACATCTGCTTaGAGCTGTAGGGAATTTTGC | + |
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Preference number: 4 (lower is better) Translates to: STVIYALAFFSLYHAFGTQVTSA*SCREFC Trigger: GCAAAATTCCCTACAGCTGCAAGCAGATGTCACTTG...AGTGCCAAATGCATGATAAAGGCTAAAGAAGGCCAGAGCATATATTACTGTAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR GCA 90 bp | TCTACAGTAATATATGCTCTGGCCTTCTTTAGCCTTTATCATGCATTTGGCACTAGAAATGACATCGTCTaGAGGCCAACGTCTAAACAA | + |
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Preference number: 4 (lower is better) Translates to: STVIYALAFFSLYHAFGTRNDIV*RPTSKQ Trigger: TTGTTTAGACGTTGGCCTGCAGACGATGTCATTTCT...AGTGCCAAATGCATGATAAAGGCTAAAGAAGGCCAGAGCATATATTACTGTAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR GCA 90 bp | TTATGGGAAGAGGTTCAGCGTTTCGCAATGTCTTTAGTATGTATTTCCCGATACGTTGTTAAACGAAGATaGTGTCTTGCAGATCCATTC | + |
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Preference number: 4 (lower is better) Translates to: LWEEVQRFAMSLVCISRYVVKRR*CLADPF Trigger: GAATGGATCTGCAAGACAGCATCTTCGTTTAACAAC...GTATCGGGAAATACATACTAAAGACATTGCGAAACGCTGAACCTCTTCCCATAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR CCA 90 bp | GTAAGCTCCTTAAAGGCAGATTCCTTTATTCTGTTTTTCCCATACTCCTCATGCCTTCCTCAGGATCAATaGTTGTTTCCCGTTGAATTT | + |
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Preference number: 4 (lower is better) Translates to: VSSLKADSFILFFPYSSCLPQDQ*LFPVEF Trigger: AAATTCAACGGGAAACAACCATTGATCCTGAGGAAG...GCATGAGGAGTATGGGAAAAACAGAATAAAGGAATCTGCCTTTAAGGAGCTTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS-3UTR CCA 90 bp | TTATGGGAAGAGGTTCAGCGTTTCGCAATGTCTTTAGTATGTATTTCCCGATACCTTCCTCAGGATCAATaGTTGTTTCCCGTTGAATTT | + |
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Preference number: 4 (lower is better) Translates to: LWEEVQRFAMSLVCISRYLPQDQ*LFPVEF Trigger: AAATTCAACGGGAAACAACCATTGATCCTGAGGAAG...GTATCGGGAAATACATACTAAAGACATTGCGAAACGCTGAACCTCTTCCCATAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR CCA 90 bp | AAGGCAGATTCCTTTATTCTGTTTTTCCCATACTCCTCATGCACCTACATAGTACAGTTGATCGTCCTGTaGAAATTCAACCTCAATGTC | + |
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Preference number: 4 (lower is better) Translates to: KADSFILFFPYSSCTYIVQLIVL*KFNLNV Trigger: GACATTGAGGTTGAATTTCCACAGGACGATCAACTG...TACTATGTAGGTGCATGAGGAGTATGGGAAAAACAGAATAAAGGAATCTGCCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS-3UTR CCA 90 bp | ACCCGGCATGATTGTAAGCTCCTTAAAGGCAGATTCCTTTATTCTGTTTTTCCCCAAACCTTTTATTTATaGGAAGAGGTTCAGCGTTTC | + |
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Preference number: 4 (lower is better) Translates to: TRHDCKLLKGRFLYSVFPQTFYL*EEVQRF Trigger: GAAACGCTGAACCTCTTCCCATAAATAAAAGGTTTG...GGGAAAAACAGAATAAAGGAATCTGCCTTTAAGGAGCTTACAATCATGCCGGGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR GCA 90 bp | GTAAGCTCCTTAAAGGCAGATTCCTTTATTCTGTTTTTCCCATACTCCTCATGCTGCATAATGACTTCCTaGCTTAGAGGAATACAGAAA | + |
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Preference number: 4 (lower is better) Translates to: VSSLKADSFILFFPYSSCCIMTS*LRGIQK Trigger: TTTCTGTATTCCTCTAAGGCAGGAAGTCATTATGCA...GCATGAGGAGTATGGGAAAAACAGAATAAAGGAATCTGCCTTTAAGGAGCTTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR GCA 90 bp | TCTACAGTAATATATGCTCTGGCCTTCTTTAGCCTTTATCATGCATTTGGCACTGTTCAGCAGCTCTGGTaGAATCTGAAAACTTTGAAA | + |
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Preference number: 4 (lower is better) Translates to: STVIYALAFFSLYHAFGTVQQLW*NLKTLK Trigger: TTTCAAAGTTTTCAGATTGCACCAGAGCTGCTGAAC...AGTGCCAAATGCATGATAAAGGCTAAAGAAGGCCAGAGCATATATTACTGTAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR GCA 90 bp | GTAAGCTCCTTAAAGGCAGATTCCTTTATTCTGTTTTTCCCATACTCCTCATGCCACCTACATAGTAGATaGTTTAAATGTCCTGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: VSSLKADSFILFFPYSSCHLHSR*FKCPGF Trigger: AAAACCAGGACATTTAAAGCATCTACTATGTAGGTG...GCATGAGGAGTATGGGAAAAACAGAATAAAGGAATCTGCCTTTAAGGAGCTTAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS TCA 90 bp | GCAGGAAGAGGCGACAGCCACAGCCCTACTGACGAGCCCGAGGGGTaGACTCCCCGGCGGGAGGCCCGAACCCTCAAACACCGGGAAGCG | + |
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Preference number: 5 (lower is better) Translates to: AGRGDSHSPTDEPEG*TPRREARTLKHREA Trigger: CGCTTCCCGGTGTTTGAGGGTTCGGGCCTCCCGCCGGGGAGTTCACCCCTCGGGCTCGTCAGTAGGGCTGTGGCTGTCGCCTCTTCCTGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS GCA 90 bp | GCAGCTCTGGTGCAATCCTTAGAGGAATACAGAAATGACATCGTCTaGAGGCCAACGTCTAAACAACCAGGAGTGGGTTTTTCCACCCAA | + |
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Preference number: 5 (lower is better) Translates to: AALVQSLEEYRNDIV*RPTSKQPGVGFSTQ Trigger: TTGGGTGGAAAAACCCACTCCTGGTTGTTTAGACGTTGGCCTGCAGACGATGTCATTTCTGTATTCCTCTAAGGATTGCACCAGAGCTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000399942.4 |
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| CDS-3UTR CAA 90 bp | TTTCGCAATGTCTTTAGTATGTATTTCCCGATACCGGAGGGGCAGAATTCCCCCTCCCCCAATCTTGTCTaGTCAAACTATAATTTGCTT | + |
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Preference number: 5 (lower is better) Translates to: FRNVFSMYFPIPEGQNSPSPNLV*SNYNLL Trigger: AAGCAAATTATAGTTTGACAAGACAAGATTGGGGGA...GGGGGAATTCTGCCCCTCCGGTATCGGGAAATACATACTAAAGACATTGCGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR CAA 90 bp | TCTACAGTAATATATGCTCTGGCCTTCTTTAGCCTTTATCATGCATTTGGCACTGTTGAATTTGTTCCATaGTTTCTGCCAGACTCTGCC | + |
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Preference number: 5 (lower is better) Translates to: STVIYALAFFSLYHAFGTVEFVP*FLPDSA Trigger: GGCAGAGTCTGGCAGAAACAATGGAACAAATTCAAC...AGTGCCAAATGCATGATAAAGGCTAAAGAAGGCCAGAGCATATATTACTGTAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS-3UTR CAA 90 bp | ATTCTGTTTTTCCCATACTCCTCATGCACCTACATAGTAGATGCTTTAAATGTCGTTGAATTTGTTCCATaGTTTCTGCCAGACTCTGCC | + |
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Preference number: 5 (lower is better) Translates to: ILFFPYSSCTYIVDALNVVEFVP*FLPDSA Trigger: GGCAGAGTCTGGCAGAAACAATGGAACAAATTCAAC...GACATTTAAAGCATCTACTATGTAGGTGCATGAGGAGTATGGGAAAAACAGAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS-3UTR CAA 90 bp | GTAAGCTCCTTAAAGGCAGATTCCTTTATTCTGTTTTTCCCATACTCCTCATGCGCCTTTATCATGCATTaGGCACTAATGTTTGTGTTG | + |
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Preference number: 5 (lower is better) Translates to: VSSLKADSFILFFPYSSCAFIMH*ALMFVL Trigger: CAACACAAACATTAGTGCCAAATGCATGATAAAGGC...GCATGAGGAGTATGGGAAAAACAGAATAAAGGAATCTGCCTTTAAGGAGCTTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000409690.5 |
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| CDS TCA 72 bp | GGCGACAGCCACAGCCCTACTGACGAGCCCGAGGGGTaGACTCCCCGGCGGGAGGCCCGAACCCTCAAACAC | + |
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Preference number: 6 (lower is better) Translates to: GDSHSPTDEPEG*TPRREARTLKH Trigger: GTGTTTGAGGGTTCGGGCCTCCCGCCGGGGAGTTCACCCCTCGGGCTCGTCAGTAGGGCTGTGGCTGTCGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000399942.4 ENST00000409690.5 |
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| CDS GCA 72 bp | GTGCAATCCTTAGAGGAATACAGAAATGACATCGTCTaGAGGCCAACGTCTAAACAACCAGGAGTGGGTTTT | + |
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Preference number: 6 (lower is better) Translates to: VQSLEEYRNDIV*RPTSKQPGVGF Trigger: AAAACCCACTCCTGGTTGTTTAGACGTTGGCCTGCAGACGATGTCATTTCTGTATTCCTCTAAGGATTGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000399942.4 |
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