RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CD160 (Homo sapiens)

Ensembl gene IDs: ENSG00000117281

Ensembl transcript IDs: ENST00000235933.10, ENST00000369288.7, ENST00000401557.7, ENST00000584442.2, ENST00000616463.1

Found 284 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGCATGATCATGGCTCACTGCAACCTCAACCAGCCTGGGCTCAGGTaGTCCTCATGCCTTAGCTTGGGACTACAGTTGTGTGCCACCATG +
Preference number: 1 (lower is better)
Translates to: GMIMAHCNLNQPGLR*SSCLSLGLQLCATM
Trigger: CATGGTGGCACACAACTGTAGTCCCAAGCTAAGGCATGAGGATCACCTGAGCCCAGGCTGGTTGAGGTTGCAGTGAGCCATGATCATGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR TCA 90 bp TGTTGGCACAGTGGTAAGACAAGGATATTCACTGAAACTAGTTCATaGGCTGAGAGAGGCACAGAGGTCCAGGAAACTCCCTCCTCCTTT +
Preference number: 1 (lower is better)
Translates to: CWHSGKTRIFTETSS*AERGTEVQETPSSF
Trigger: AAAGGAGGAGGGAGTTTCCTGGACCTCTGTGCCTCTCTCAGCTCATGAACTAGTTTCAGTGAATATCCTTGTCTTACCACTGTGCCAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR TCA 90 bp CAGCTACATGTGTTTAATATACTCAATCTGGCCATCAGCCTTTGCTaGGGAGCCGCATTGTTCAAAACCCATCTCCAAACCAAGTCTGTC +
Preference number: 1 (lower is better)
Translates to: QLHVFNILNLAISLC*GAALFKTHLQTKSV
Trigger: GACAGACTTGGTTTGGAGATGGGTTTTGAACAATGCGGCTCCTCAGCAAAGGCTGATGGCCAGATTGAGTATATTAAACACATGTAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR TCA 90 bp TGCACAAATCTTCCTCTTCCTCCAGCAGTGCTGTATGGATGTTGTTaGATGTTGAGGTCTGTCTGCATTTTCTCATTTTCATGCCAAGTC +
Preference number: 1 (lower is better)
Translates to: CTNLPLPPAVLYGCC*MLRSVCIFSFSCQV
Trigger: GACTTGGCATGAAAATGAGAAAATGCAGACAGACCTCAACATTCAACAACATCCATACAGCACTGCTGGAGGAAGAGGAAGATTTGTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR TCA 90 bp ATCTTCCTCTTCCTCCAGCAGTGCTGTATGGATGTTGTTGAATGTTaGGGTCTGTCTGCATTTTCTCATTTTCATGCCAAGTCAATCACT +
Preference number: 1 (lower is better)
Translates to: IFLFLQQCCMDVVEC*GLSAFSHFHAKSIT
Trigger: AGTGATTGACTTGGCATGAAAATGAGAAAATGCAGACAGACCTCAACATTCAACAACATCCATACAGCACTGCTGGAGGAAGAGGAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR GCA 90 bp CTTCCTTGTGTCTGTTTCCTGATGAGTAACCAGGGGATGTTTGCTTaGAAGGGTTGTATAAGGTTAGAATCATCATGTGTAAAGCATCTG +
Preference number: 1 (lower is better)
Translates to: LPCVCFLMSNQGMFA*KGCIRLESSCVKHL
Trigger: CAGATGCTTTACACATGATGATTCTAACCTTATACAACCCTTGCAAGCAAACATCCCCTGGTTACTCATCAGGAAACAGACACAAGGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR CCA 90 bp TTGAGGTCTGTCTGCATTTTCTCATTTTCATGCCAAGTCAATCACTaGATCTGGCTGTCTTCCTTTCTGTCCTACCTATCTTTGCTTGTT +
Preference number: 1 (lower is better)
Translates to: LRSVCIFSFSCQVNH*IWLSSFLSYLSLLV
Trigger: AACAAGCAAAGATAGGTAGGACAGAAAGGAAGACAGCCAGATCCAGTGATTGACTTGGCATGAAAATGAGAAAATGCAGACAGACCTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR TCA 90 bp CTATGTGGTGTTTCTGGACCTGAAAAAGCATGTGTACTATTCTACTaGATACTACCTCTTTCAATAATTCTACTAAGCCTTGAGTTGGGG +
Preference number: 1 (lower is better)
Translates to: LCGVSGPEKACVLFY*ILPLSIILLSLELG
Trigger: CCCCAACTCAAGGCTTAGTAGAATTATTGAAAGAGGTAGTATTCAGTAGAATAGTACACATGCTTTTTCAGGTCCAGAAACACCACATAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR GCA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCGTGGTGCTCTTGGTCTaGACAAATCTTCCTCTTCCT +
Preference number: 2 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLVVLLV*TNLPLP
Trigger: AGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCAC...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR-3UTR CCA 90 bp GTGAGCCACCGCACCAGGCCCTATTTAACTTCCTTGTGTCTGTTTCCTGATGAGGTCAATCACTGGATCTaGCTGTCTTCCTTTCTGTCC +
Preference number: 2 (lower is better)
Translates to: VSHRTRPYLTSLCLFPDEVNHWI*LSSFLS
Trigger: GGACAGAAAGGAAGACAGCCAGATCCAGTGATTGAC...CTCATCAGGAAACAGACACAAGGAAGTTAAATAGGGCCTGGTGCGGTGGCTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CCA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCAGTCTGTGGTGCTCTTaGTCTGCACAAATCTTCCTC +
Preference number: 2 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLSLWCS*SAQIFL
Trigger: GAGGAAGATTTGTGCAGACCAAGAGCACCACAGACT...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR-3UTR GCA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCCTCTTCCTCCAGCAGTaGTGTATGGATGTTGTTGAA +
Preference number: 2 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLLFLQQ*CMDVVE
Trigger: TTCAACAACATCCATACAGCACTGCTGGAGGAAGAG...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR-3UTR GCA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCAGTTGTAGTCTGTGGTaGTCTTGGTCTGCACAAATC +
Preference number: 2 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLSCSLW*SWSAQI
Trigger: GATTTGTGCAGACCAAGAGCACCACAGACTACAACT...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR-3UTR GCA 90 bp TCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCCCCTGTGCCCTGTTaGATTCTTCTCTGTGCCTAT +
Preference number: 2 (lower is better)
Translates to: SSYQEYPAHSLLNYDKRSSPVPC*ILLCAY
Trigger: ATAGGCACAGAGAAGAATGCAACAGGGCACAGGGGA...TGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
3UTR-3UTR GCA 90 bp CCTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGAGGAAGAAGGCAAGTTTaGCCTGATGGTGAGGAGCAA +
Preference number: 2 (lower is better)
Translates to: PAHSLLNYDKRSSVQRERGRRQV*PDGEEQ
Trigger: TTGCTCCTCACCATCAGGGCAAACTTGCCTTCTTCC...TCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
3UTR-3UTR GCA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCCAGGGGATGTTTGCTTaGAAGGGTTGTATAAGGTTA +
Preference number: 2 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLQGMFA*KGCIRL
Trigger: TAACCTTATACAACCCTTGCAAGCAAACATCCCCTG...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CCA 90 bp CCTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGAGGCAGTTGTAGTCTGTaGTGCTCTTGGTCTGCACAA +
Preference number: 2 (lower is better)
Translates to: PAHSLLNYDKRSSVQRERGSCSL*CSWSAQ
Trigger: TTGTGCAGACCAAGAGCACCACAGACTACAACTGCC...TCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
3UTR-3UTR GCA 90 bp GTAGTTCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAGGAAGAAGGCAAGTTTaGCCTGATGGTGAGGAGCAA +
Preference number: 2 (lower is better)
Translates to: VVPPIRNILPTLCLTMTRGRRQV*PDGEEQ
Trigger: TTGCTCCTCACCATCAGGGCAAACTTGCCTTCTTCC...TCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGAACTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
3UTR-3UTR TCA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCTCTTCCTCTAATAGCTaGAAATCTGTTGCTTCAACT +
Preference number: 2 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLSSSNS*KSVAST
Trigger: AGTTGAAGCAACAGATTTTCAGCTATTAGAGGAAGA...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR GCA 90 bp CCTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGACTCTTCCTCCAGCAGTaGTGTATGGATGTTGTTGAA +
Preference number: 2 (lower is better)
Translates to: PAHSLLNYDKRSSVQRERLFLQQ*CMDVVE
Trigger: TTCAACAACATCCATACAGCACTGCTGGAGGAAGAG...TCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
3UTR-3UTR GCA 90 bp CTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGAAGTGGTGCTCTTGGTCTaGACAAATCTTCCTCTTCCT +
Preference number: 2 (lower is better)
Translates to: LPTLCLTMTRGHLSKEKEVVLLV*TNLPLP
Trigger: AGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCAC...TTCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
3UTR-3UTR GCA 90 bp CCTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGAAGTTGTAGTCTGTGGTaGTCTTGGTCTGCACAAATC +
Preference number: 2 (lower is better)
Translates to: PAHSLLNYDKRSSVQRERSCSLW*SWSAQI
Trigger: GATTTGTGCAGACCAAGAGCACCACAGACTACAACT...TCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
3UTR-3UTR TCA 90 bp CACAAATCTTCCTCTTCCTCCAGCAGTGCTGTATGGATGTTGTTGAATGTTGAGCCTCTGTTCATGCAGTaGGTAGAGGTAGTTGTACTA +
Preference number: 2 (lower is better)
Translates to: HKSSSSSSSAVWMLLNVEPLFMQ*VEVVVL
Trigger: TAGTACAACTACCTCTACTCACTGCATGAACAGAGG...CTCAACATTCAACAACATCCATACAGCACTGCTGGAGGAAGAGGAAGATTTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR TCA 90 bp TCTCTGTTTTCTTTTGATGACTTGCAAATAAGGGACTGGAATAGGGAATGTTTACAGCCTGGGCTCAGGTaGTCCTCATGCCTTAGCTTG +
Preference number: 2 (lower is better)
Translates to: SLFSFDDLQIRDWNRECLQPGLR*SSCLSL
Trigger: CAAGCTAAGGCATGAGGATCACCTGAGCCCAGGCTG...TAAACATTCCCTATTCCAGTCCCTTATTTGCAAGTCATCAAAAGAAAACAGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR GCA 90 bp CTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGAACTCTTCCTCCAGCAGTaGTGTATGGATGTTGTTGAA +
Preference number: 2 (lower is better)
Translates to: LPTLCLTMTRGHLSKEKELFLQQ*CMDVVE
Trigger: TTCAACAACATCCATACAGCACTGCTGGAGGAAGAG...TTCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
3UTR-3UTR CCA 90 bp CTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGAATGCCAAGTCAATCACTaGATCTGGCTGTCTTCCTTT +
Preference number: 2 (lower is better)
Translates to: LPTLCLTMTRGHLSKEKECQVNH*IWLSSF
Trigger: AAAGGAAGACAGCCAGATCCAGTGATTGACTTGGCA...TTCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
3UTR-3UTR CCA 90 bp CTCATGACTGTAAAGGGATTGGAAAAGGAAAGTGGGAACTATTTTATGTATTGCCCATGTTGCCCAGACTaGCCTCAAACTCCTAGGCTC +
Preference number: 2 (lower is better)
Translates to: LMTVKGLEKESGNYFMYCPCCPD*PQTPRL
Trigger: GAGCCTAGGAGTTTGAGGCCAGTCTGGGCAACATGG...GCAATACATAAAATAGTTCCCACTTTCCTTTTCCAATCCCTTTACAGTCATGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR CAA 90 bp CTGCACAAATCTTCCTCTTCCTCCAGCAGTGCTGTATGGATGTTGTaGAATGTTGAGGTCTGTCTGCATTTTCTCATTTTCATGCCAAGT +
Preference number: 2 (lower is better)
Translates to: LHKSSSSSSSAVWML*NVEVCLHFLIFMPS
Trigger: ACTTGGCATGAAAATGAGAAAATGCAGACAGACCTCAACATTCAACAACATCCATACAGCACTGCTGGAGGAAGAGGAAGATTTGTGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR-3UTR TCA 90 bp TCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAGGTCAAGTCAAGGATTACACTaGTTTGCCCCAGCTTATATT +
Preference number: 2 (lower is better)
Translates to: SSYQEYPAHSLLNYDKRSSQGLH*FAPAYI
Trigger: AATATAAGCTGGGGCAAATCAGTGTAATCCTTGACT...TGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
3UTR-3UTR GCA 90 bp CTGATGAGTAACCAGGGGATGTTTGCTTGCAAGGGTTGTATAAGGTTAGAATCAGTAGTTGTACTAACTTaGCTCTCTCACAGGCCTTCA +
Preference number: 2 (lower is better)
Translates to: LMSNQGMFACKGCIRLESVVVLT*LSHRPS
Trigger: TGAAGGCCTGTGAGAGAGGCAAGTTAGTACAACTAC...TGATTCTAACCTTATACAACCCTTGCAAGCAAACATCCCCTGGTTACTCATCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CCA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACAGGTGGTCCTGTTTCTaGAAAGGGGAGGAGTCAATC +
Preference number: 2 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHRWSCF*KGEESI
Trigger: GATTGACTCCTCCCCTTTCCAGAAACAGGACCACCT...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR TCA 90 bp CTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGAAGATGTTGTTGAATGTTaGGGTCTGTCTGCATTTTCT +
Preference number: 2 (lower is better)
Translates to: LPTLCLTMTRGHLSKEKEDVVEC*GLSAFS
Trigger: AGAAAATGCAGACAGACCTCAACATTCAACAACATC...TTCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
3UTR-3UTR GCA 90 bp GAAGGATGTAAGAGGTGCTTTGCATATAGTAGATCATTACTGAGTGTAAGGTTTTCCCCTGTGCCCTGTTaGATTCTTCTCTGTGCCTAT +
Preference number: 2 (lower is better)
Translates to: EGCKRCFAYSRSLLSVRFSPVPC*ILLCAY
Trigger: ATAGGCACAGAGAAGAATGCAACAGGGCACAGGGGA...AAACCTTACACTCAGTAATGATCTACTATATGCAAAGCACCTCTTACATCCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR GCA 90 bp TCTCTGTTTTCTTTTGATGACTTGCAAATAAGGGACTGGAATAGGGAATGTTTAGGGGTTTTGCCATGTTaGCCAGACTGGCCTCAAACT +
Preference number: 2 (lower is better)
Translates to: SLFSFDDLQIRDWNRECLGVLPC*PDWPQT
Trigger: AGTTTGAGGCCAGTCTGGGCAACATGGCAAAACCCC...TAAACATTCCCTATTCCAGTCCCTTATTTGCAAGTCATCAAAAGAAAACAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CCA 90 bp GTAGTTCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAGTTCTGTTTATTTACTaGAGCTTAGGAGGGAAGAAG +
Preference number: 2 (lower is better)
Translates to: VVPPIRNILPTLCLTMTRVLFIY*SLGGKK
Trigger: CTTCTTCCCTCCTAAGCTCCAGTAAATAAACAGAAC...TCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGAACTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
3UTR-3UTR CCA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACGTCAATCACTGGATCTaGCTGTCTTCCTTTCTGTCC +
Preference number: 2 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHVNHWI*LSSFLS
Trigger: GGACAGAAAGGAAGACAGCCAGATCCAGTGATTGAC...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR-3UTR CCA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGGGCAGTTGTAGTCTGTaGTGCTCTTGGTCTGCACAA +
Preference number: 2 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLGSCSL*CSWSAQ
Trigger: TTGTGCAGACCAAGAGCACCACAGACTACAACTGCC...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR CAA 90 bp AAGTTTGCCCTGATGGTGAGGAGCAAAGTCAAGGATTACACTGATTaGCCCCAGCTTATATTTCCACAGATTCTTGGTATATTTAGCATC +
Preference number: 2 (lower is better)
Translates to: KFALMVRSKVKDYTD*PQLIFPQILGIFSI
Trigger: GATGCTAAATATACCAAGAATCTGTGGAAATATAAGCTGGGGCAAATCAGTGTAATCCTTGACTTTGCTCCTCACCATCAGGGCAAACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR-3UTR TCA 90 bp CTCATGACTGTAAAGGGATTGGAAAAGGAAAGTGGGAACTATTTTATGTATTGCGGCCAGGCAAAAACCTaGATCAGTTGCTTGTTATGC +
Preference number: 2 (lower is better)
Translates to: LMTVKGLEKESGNYFMYCGQAKT*ISCLLC
Trigger: GCATAACAAGCAACTGATTCAGGTTTTTGCCTGGCC...GCAATACATAAAATAGTTCCCACTTTCCTTTTCCAATCCCTTTACAGTCATGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR TCA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGACTGAAACTAGTTCATaGGCTGAGAGAGGCACAGAG +
Preference number: 2 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLTETSS*AERGTE
Trigger: CTCTGTGCCTCTCTCAGCTCATGAACTAGTTTCAGT...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR GCA 90 bp CATATATTTATCCGATATTTGAGGACTATACTACCCACTTTGGTGAAAGCTGTTTCCCCTGTGCCCTGTTaGATTCTTCTCTGTGCCTAT +
Preference number: 2 (lower is better)
Translates to: HIFIRYLRTILPTLVKAVSPVPC*ILLCAY
Trigger: ATAGGCACAGAGAAGAATGCAACAGGGCACAGGGGA...AACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR-3UTR GCA 90 bp CTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGAAATGTTGAGGTCTGTCTaGATTTTCTCATTTTCATGC +
Preference number: 2 (lower is better)
Translates to: LPTLCLTMTRGHLSKEKEMLRSV*IFSFSC
Trigger: GCATGAAAATGAGAAAATGCAGACAGACCTCAACAT...TTCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
3UTR-3UTR GCA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACCCTTTGATCGCTCCTTaGTGGAAGGAACAATCAAAG +
Preference number: 2 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHPLIAP*WKEQSK
Trigger: CTTTGATTGTTCCTTCCAGCAAGGAGCGATCAAAGG...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CCA 90 bp GAAGGATGTAAGAGGTGCTTTGCATATAGTAGATCATTACTGAGTGTAAGGTTTAGTCTGTGGTGCTCTTaGTCTGCACAAATCTTCCTC +
Preference number: 2 (lower is better)
Translates to: EGCKRCFAYSRSLLSVRFSLWCS*SAQIFL
Trigger: GAGGAAGATTTGTGCAGACCAAGAGCACCACAGACT...AAACCTTACACTCAGTAATGATCTACTATATGCAAAGCACCTCTTACATCCTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR TCA 90 bp GTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTACTGTATGGATGTTGTTaGATGTTGAGGTCTGTCTGC +
Preference number: 2 (lower is better)
Translates to: VMRKILSHSQTHLAVAVLLYGCC*MLRSVC
Trigger: GCAGACAGACCTCAACATTCAACAACATCCATACAG...TAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR-3UTR GCA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGAGTTGTAGTCTGTGGTaGTCTTGGTCTGCACAAATC +
Preference number: 2 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLSCSLW*SWSAQI
Trigger: GATTTGTGCAGACCAAGAGCACCACAGACTACAACT...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR CAA 90 bp AAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACTTaGGTGAAAGCTGTTCTGTTTATTTACTGGAGCTTAGGAGGGAAG +
Preference number: 2 (lower is better)
Translates to: KTHIFIRYLRTILPT*VKAVLFIYWSLGGK
Trigger: CTTCCCTCCTAAGCTCCAGTAAATAAACAGAACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR-3UTR GCA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACTGTCCTACCTATCTTTaGTTGTTTTCTCTCTCTTTC +
Preference number: 2 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHCPTYL*LFSLSF
Trigger: GAAAGAGAGAGAAAACAAGCAAAGATAGGTAGGACA...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR-3UTR CCA 90 bp GAAGGATGTAAGAGGTGCTTTGCATATAGTAGATCATTACTGAGTGTAAGGTTTGTTCTGTTTATTTACTaGAGCTTAGGAGGGAAGAAG +
Preference number: 2 (lower is better)
Translates to: EGCKRCFAYSRSLLSVRFVLFIY*SLGGKK
Trigger: CTTCTTCCCTCCTAAGCTCCAGTAAATAAACAGAAC...AAACCTTACACTCAGTAATGATCTACTATATGCAAAGCACCTCTTACATCCTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CCA 90 bp GAAGGATGTAAGAGGTGCTTTGCATATAGTAGATCATTACTGAGTGTAAGGTTTTTAATATACTCAATCTaGCCATCAGCCTTTGCTGAG +
Preference number: 2 (lower is better)
Translates to: EGCKRCFAYSRSLLSVRFLIYSI*PSAFAE
Trigger: CTCAGCAAAGGCTGATGGCCAGATTGAGTATATTAA...AAACCTTACACTCAGTAATGATCTACTATATGCAAAGCACCTCTTACATCCTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR CAA 90 bp GTTTCATATTCATGTTTCCTCCTGAAAACTGGCATAGGCTTAAATTaGGAAGATCCTTACCAAGGATTACAGATAAGGTCTCTGTTTTCT +
Preference number: 2 (lower is better)
Translates to: VSYSCFLLKTGIGLN*EDPYQGLQIRSLFS
Trigger: AGAAAACAGAGACCTTATCTGTAATCCTTGGTAAGGATCTTCCAAATTTAAGCCTATGCCAGTTTTCAGGAGGAAACATGAATATGAAAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR TCA 90 bp TCTCTGTTTTCTTTTGATGACTTGCAAATAAGGGACTGGAATAGGGAATGTTTAAGTCAAGGATTACACTaGTTTGCCCCAGCTTATATT +
Preference number: 2 (lower is better)
Translates to: SLFSFDDLQIRDWNRECLSQGLH*FAPAYI
Trigger: AATATAAGCTGGGGCAAATCAGTGTAATCCTTGACT...TAAACATTCCCTATTCCAGTCCCTTATTTGCAAGTCATCAAAAGAAAACAGAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR TCA 90 bp TCTCTGTTTTCTTTTGATGACTTGCAAATAAGGGACTGGAATAGGGAATGTTTAGATGTTGTTGAATGTTaGGGTCTGTCTGCATTTTCT +
Preference number: 2 (lower is better)
Translates to: SLFSFDDLQIRDWNRECLDVVEC*GLSAFS
Trigger: AGAAAATGCAGACAGACCTCAACATTCAACAACATC...TAAACATTCCCTATTCCAGTCCCTTATTTGCAAGTCATCAAAAGAAAACAGAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR GCA 90 bp CTCATGACTGTAAAGGGATTGGAAAAGGAAAGTGGGAACTATTTTATGTATTGCTGTCCTACCTATCTTTaGTTGTTTTCTCTCTCTTTC +
Preference number: 2 (lower is better)
Translates to: LMTVKGLEKESGNYFMYCCPTYL*LFSLSF
Trigger: GAAAGAGAGAGAAAACAAGCAAAGATAGGTAGGACA...GCAATACATAAAATAGTTCCCACTTTCCTTTTCCAATCCCTTTACAGTCATGAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR GCA 90 bp GTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAATGTTGAGGTCTGTCTaGATTTTCTCATTTTCATGC +
Preference number: 2 (lower is better)
Translates to: VMRKILSHSQTHLAVAVLMLRSV*IFSFSC
Trigger: GCATGAAAATGAGAAAATGCAGACAGACCTCAACAT...TAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR-3UTR GCA 90 bp GTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAAGGATCTGTATTAATTaGTGTGACGGGCAACAATTA +
Preference number: 2 (lower is better)
Translates to: VMRKILSHSQTHLAVAVLRICIN*CDGQQL
Trigger: TAATTGTTGCCCGTCACAGCAATTAATACAGATCCT...TAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CCA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGAGGCTTACAAAGCTGTaGAAAGAAAGTTTGTATTAC +
Preference number: 2 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLRLTKL*KESLYY
Trigger: GTAATACAAACTTTCTTTCCACAGCTTTGTAAGCCT...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR TCA 72 bp ATGGCTCACTGCAACCTCAACCAGCCTGGGCTCAGGTaGTCCTCATGCCTTAGCTTGGGACTACAGTTGTGT +
Preference number: 3 (lower is better)
Translates to: MAHCNLNQPGLR*SSCLSLGLQLC
Trigger: ACACAACTGTAGTCCCAAGCTAAGGCATGAGGATCACCTGAGCCCAGGCTGGTTGAGGTTGCAGTGAGCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CAA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCTCTGGCCATCAGCCTTaGCTGAGGAGCCGCATTGTT +
Preference number: 3 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLSGHQP*LRSRIV
Trigger: AACAATGCGGCTCCTCAGCAAAGGCTGATGGCCAGA...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR TCA 72 bp TCTGATTCTGGTGGGAGTGGGAAGGGGGCTAGCCTTTaGTCGCTCCTTGCTGGAAGGAACAATCAAAGAAGC +
Preference number: 3 (lower is better)
Translates to: SDSGGSGKGASL*SLLAGRNNQRS
Trigger: GCTTCTTTGATTGTTCCTTCCAGCAAGGAGCGATCAAAGGCTAGCCCCCTTCCCACTCCCACCAGAATCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CAA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCGCTGTATGGATGTTGTaGAATGTTGAGGTCTGTCTG +
Preference number: 3 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLAVWML*NVEVCL
Trigger: CAGACAGACCTCAACATTCAACAACATCCATACAGC...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR-3UTR CAA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCATGACTGTAAAGGGATaGGAAAAGGAAAGTGGGAAC +
Preference number: 3 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLMTVKG*EKESGN
Trigger: GTTCCCACTTTCCTTTTCCAATCCCTTTACAGTCAT...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CAA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCATTAGGGTTGTAATCTaGAGCAAATCTGATTCTGGT +
Preference number: 3 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLIRVVI*SKSDSG
Trigger: ACCAGAATCAGATTTGCTCAAGATTACAACCCTAAT...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR TCA 72 bp TGCCCTGATGGTGAGGAGCAAAGTCAAGGATTACACTaGTTTGCCCCAGCTTATATTTCCACAGATTCTTGG +
Preference number: 3 (lower is better)
Translates to: CPDGEEQSQGLH*FAPAYISTDSW
Trigger: CCAAGAATCTGTGGAAATATAAGCTGGGGCAAATCAGTGTAATCCTTGACTTTGCTCCTCACCATCAGGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR TCA 72 bp TCTGTTGCTTCAACTTGTAGCCCTCTGTTCATGCAGTaGGTAGAGGTAGTTGTACTAACTTGCCTCTCTCAC +
Preference number: 3 (lower is better)
Translates to: SVASTCSPLFMQ*VEVVVLTCLSH
Trigger: GTGAGAGAGGCAAGTTAGTACAACTACCTCTACTCACTGCATGAACAGAGGGCTACAAGTTGAAGCAACAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR TCA 72 bp GTGTTTAATATACTCAATCTGGCCATCAGCCTTTGCTaGGGAGCCGCATTGTTCAAAACCCATCTCCAAACC +
Preference number: 3 (lower is better)
Translates to: VFNILNLAISLC*GAALFKTHLQT
Trigger: GGTTTGGAGATGGGTTTTGAACAATGCGGCTCCTCAGCAAAGGCTGATGGCCAGATTGAGTATATTAAACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CAA 90 bp GTAGTTCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAAGTGCTGTATGGATGTaGTTGAATGTTGAGGTCTGT +
Preference number: 3 (lower is better)
Translates to: VVPPIRNILPTLCLTMTRSAVWM*LNVEVC
Trigger: ACAGACCTCAACATTCAACAACATCCATACAGCACT...TCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGAACTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
3UTR TCA 72 bp TTCCTCCAGCAGTGCTGTATGGATGTTGTTGAATGTTaGGGTCTGTCTGCATTTTCTCATTTTCATGCCAAG +
Preference number: 3 (lower is better)
Translates to: FLQQCCMDVVEC*GLSAFSHFHAK
Trigger: CTTGGCATGAAAATGAGAAAATGCAGACAGACCTCAACATTCAACAACATCCATACAGCACTGCTGGAGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR GCA 72 bp GTCTGTTTCCTGATGAGTAACCAGGGGATGTTTGCTTaGAAGGGTTGTATAAGGTTAGAATCATCATGTGTA +
Preference number: 3 (lower is better)
Translates to: VCFLMSNQGMFA*KGCIRLESSCV
Trigger: TACACATGATGATTCTAACCTTATACAACCCTTGCAAGCAAACATCCCCTGGTTACTCATCAGGAAACAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR GCA 72 bp TCTCAGAATGAATGGGGTGGTGAAGGATGTAAGAGGTaGTTTGCATATAGTAGATCATTACTGAGTGTAAGG +
Preference number: 3 (lower is better)
Translates to: SQNEWGGEGCKR*FAYSRSLLSVR
Trigger: CCTTACACTCAGTAATGATCTACTATATGCAAAGCACCTCTTACATCCTTCACCACCCCATTCATTCTGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CAA 90 bp CATATATTTATCCGATATTTGAGGACTATACTACCCACTTTGGTGAAAGCTGTTGGTAGTTGTACTAACTaGCCTCTCTCACAGGCCTTC +
Preference number: 3 (lower is better)
Translates to: HIFIRYLRTILPTLVKAVGSCTN*PLSQAF
Trigger: GAAGGCCTGTGAGAGAGGCAAGTTAGTACAACTACC...AACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CAA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGGCCTTTGATCGCTCCTaGCTGGAAGGAACAATCAAA +
Preference number: 3 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLAFDRS*LEGTIK
Trigger: TTTGATTGTTCCTTCCAGCAAGGAGCGATCAAAGGC...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CAA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGGCTGTATGGATGTTGTaGAATGTTGAGGTCTGTCTG +
Preference number: 3 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLAVWML*NVEVCL
Trigger: CAGACAGACCTCAACATTCAACAACATCCATACAGC...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR-3UTR CAA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACAGTGCTGTATGGATGTaGTTGAATGTTGAGGTCTGT +
Preference number: 3 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHSAVWM*LNVEVC
Trigger: ACAGACCTCAACATTCAACAACATCCATACAGCACT...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR CCA 72 bp TTGAAGGTAGGTTTTCCACGTATAGCTCTGAATTGTTaGCACAGTGGTAAGACAAGGATATTCACTGAAACT +
Preference number: 3 (lower is better)
Translates to: LKVGFPRIALNC*HSGKTRIFTET
Trigger: AGTTTCAGTGAATATCCTTGTCTTACCACTGTGCCAACAATTCAGAGCTATACGTGGAAAACCTACCTTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CAA 90 bp TCTCTGTTTTCTTTTGATGACTTGCAAATAAGGGACTGGAATAGGGAATGTTTAGCTGTATGGATGTTGTaGAATGTTGAGGTCTGTCTG +
Preference number: 3 (lower is better)
Translates to: SLFSFDDLQIRDWNRECLAVWML*NVEVCL
Trigger: CAGACAGACCTCAACATTCAACAACATCCATACAGC...TAAACATTCCCTATTCCAGTCCCTTATTTGCAAGTCATCAAAAGAAAACAGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CAA 90 bp GAAGGATGTAAGAGGTGCTTTGCATATAGTAGATCATTACTGAGTGTAAGGTTTATAGCTGAAAATCTGTaGCTTCAACTTGTAGCCCTC +
Preference number: 3 (lower is better)
Translates to: EGCKRCFAYSRSLLSVRFIAENL*LQLVAL
Trigger: GAGGGCTACAAGTTGAAGCAACAGATTTTCAGCTAT...AAACCTTACACTCAGTAATGATCTACTATATGCAAAGCACCTCTTACATCCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CAA 90 bp GAAGGATGTAAGAGGTGCTTTGCATATAGTAGATCATTACTGAGTGTAAGGTTTCCCTATTTAACTTCCTaGTGTCTGTTTCCTGATGAG +
Preference number: 3 (lower is better)
Translates to: EGCKRCFAYSRSLLSVRFPYLTS*CLFPDE
Trigger: CTCATCAGGAAACAGACACAAGGAAGTTAAATAGGG...AAACCTTACACTCAGTAATGATCTACTATATGCAAAGCACCTCTTACATCCTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CAA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGATGCCACTCAAAAAGTaGAAGGTAGGTTTTCCACGT +
Preference number: 3 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLMPLKK*KVGFPR
Trigger: ACGTGGAAAACCTACCTTCAACTTTTTGAGTGGCAT...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR-3UTR CAA 90 bp CTCATGACTGTAAAGGGATTGGAAAAGGAAAGTGGGAACTATTTTATGTATTGCTGTAAGCATGATAACTaGACCTATGTGGTGTTTCTG +
Preference number: 3 (lower is better)
Translates to: LMTVKGLEKESGNYFMYCCKHDN*TYVVFL
Trigger: CAGAAACACCACATAGGTCAAGTTATCATGCTTACA...GCAATACATAAAATAGTTCCCACTTTCCTTTTCCAATCCCTTTACAGTCATGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR TCA 72 bp GTTTCTGGACCTGAAAAAGCATGTGTACTATTCTACTaGATACTACCTCTTTCAATAATTCTACTAAGCCTT +
Preference number: 3 (lower is better)
Translates to: VSGPEKACVLFY*ILPLSIILLSL
Trigger: AAGGCTTAGTAGAATTATTGAAAGAGGTAGTATTCAGTAGAATAGTACACATGCTTTTTCAGGTCCAGAAAC
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR TCA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCGGGCCACAAGGCTGGTaGCCAGCATTACCCAGACCT +
Preference number: 4 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLGPQGW*PALPRP
Trigger: AGGTCTGGGTAATGCTGGTCACCAGCCTTGTGGCCC...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CCA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCCACTGCACTCTGGCCTaGTTGACAGTGAGACCCTCG +
Preference number: 4 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLHCTLA*LTVRPS
Trigger: CGAGGGTCTCACTGTCAACCAGGCCAGAGTGCAGTG...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369288.7
CDS-3UTR TCA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCGCAGGCCCAGGAACTTaGAGCAAATGTTGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLAGPGT*SKCWLC
Trigger: GCAGAGCCAACATTTGCTTCAAGTTCCTGGGCCTGC...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR TCA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCCTGAAGGCGGATACCTaGCTTCTGGCTTCTGGCACA +
Preference number: 4 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLLKADT*LLASGT
Trigger: TGTGCCAGAAGCCAGAAGTCAGGTATCCGCCTTCAG...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR GCA 90 bp TCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAGGTCAGGGCACAGCAGCCTCTaGCGGGTTCCAACAGCATCC +
Preference number: 4 (lower is better)
Translates to: SSYQEYPAHSLLNYDKRSGHSSL*RVPTAS
Trigger: GGATGCTGTTGGAACCCGGCAGAGGCTGCTGTGCCC...TGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CCA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCCGGATACCTGACTTCTaGCTTCTGGCACAACACTGG +
Preference number: 4 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLRIPDF*LLAQHW
Trigger: CCAGTGTTGTGCCAGAAGCCAGAAGTCAGGTATCCG...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR TCA 90 bp GTAGTTCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAGGGCCACAAGGCTGGTaGCCAGCATTACCCAGACCT +
Preference number: 4 (lower is better)
Translates to: VVPPIRNILPTLCLTMTRGPQGW*PALPRP
Trigger: AGGTCTGGGTAATGCTGGTCACCAGCCTTGTGGCCC...TCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGAACTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CCA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCAGCACCCTCATTGCTTaGGGTGCTTACGGCTCTTTT +
Preference number: 4 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLSTLIA*GAYGSF
Trigger: AAAAGAGCCGTAAGCACCCCAAGCAATGAGGGTGCT...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR GCA 90 bp CACAAATCTTCCTCTTCCTCCAGCAGTGCTGTATGGATGTTGTTGAATGTTGAGGTTCCAACAGCATCCTaGACGCTGTCAGCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: HKSSSSSSSAVWMLLNVEVPTAS*TLSAGP
Trigger: TGGGCCTGCTGACAGCGTGCAGGATGCTGTTGGAAC...CTCAACATTCAACAACATCCATACAGCACTGCTGGAGGAAGAGGAAGATTTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR GCA 90 bp CTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGAAGTTCCAACAGCATCCTaGACGCTGTCAGCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: LPTLCLTMTRGHLSKEKEVPTAS*TLSAGP
Trigger: TGGGCCTGCTGACAGCGTGCAGGATGCTGTTGGAAC...TTCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CCA 90 bp TCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAGGTCAAGTCGCGTTCCTTCCTaGGAAGCTGAGCTGGTGATG +
Preference number: 4 (lower is better)
Translates to: SSYQEYPAHSLLNYDKRSSRVPS*EAELVM
Trigger: CATCACCAGCTCAGCTTCCCAGGAAGGAACGCGACT...TGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CCA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCTTCTTGTTCTCAGACTaGGGGCTCACGTTGAAATGG +
Preference number: 4 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLFLFSD*GLTLKW
Trigger: CCATTTCAACGTGAGCCCCCAGTCTGAGAACAAGAA...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369288.7
ENST00000616463.1
CDS-3UTR TCA 90 bp GTAGTTCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGACTGAAGGCGGATACCTaGCTTCTGGCTTCTGGCACA +
Preference number: 4 (lower is better)
Translates to: VVPPIRNILPTLCLTMTRLKADT*LLASGT
Trigger: TGTGCCAGAAGCCAGAAGTCAGGTATCCGCCTTCAG...TCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGAACTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR TCA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCTCAGTGAAACTGGTTTaGACTTTCCTGTGGATAGCC +
Preference number: 4 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLSVKLV*TFLWIA
Trigger: GGCTATCCACAGGAAAGTTCAAACCAGTTTCACTGA...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR TCA 90 bp CACAAATCTTCCTCTTCCTCCAGCAGTGCTGTATGGATGTTGTTGAATGTTGAGAAGTCTCACCTGTCCTaGGATGCGTGCGTGATAGGC +
Preference number: 4 (lower is better)
Translates to: HKSSSSSSSAVWMLLNVEKSHLS*DACVIG
Trigger: GCCTATCACGCACGCATCTCAGGACAGGTGAGACTT...CTCAACATTCAACAACATCCATACAGCACTGCTGGAGGAAGAGGAAGATTTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR GCA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACGGGCACAGCAGCCTCTaGCGGGTTCCAACAGCATCC +
Preference number: 4 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHGHSSL*RVPTAS
Trigger: GGATGCTGTTGGAACCCGGCAGAGGCTGCTGTGCCC...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR GCA 90 bp TCTGTGCCTATTGTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTGGGCACAGCAGCCTCTaGCGGGTTCCAACAGCATCC +
Preference number: 4 (lower is better)
Translates to: SVPIVMRKILSHSQTHLAGHSSL*RVPTAS
Trigger: GGATGCTGTTGGAACCCGGCAGAGGCTGCTGTGCCC...AGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTACAATAGGCACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CCA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCAAATGTTGGCTCTGCTaGTATCCTTGGCTTCAGTCT +
Preference number: 4 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLKCWLC*YPWLQS
Trigger: AGACTGAAGCCAAGGATACCAGCAGAGCCAACATTT...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CCA 90 bp GTAGTTCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAAGTCGCGTTCCTTCCTaGGAAGCTGAGCTGGTGATG +
Preference number: 4 (lower is better)
Translates to: VVPPIRNILPTLCLTMTRSRVPS*EAELVM
Trigger: CATCACCAGCTCAGCTTCCCAGGAAGGAACGCGACT...TCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGAACTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CCA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCATTTTTCTCTCCCCCTaGACATCCTTTCCAACCTTC +
Preference number: 4 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLIFLSP*TSFPTF
Trigger: GAAGGTTGGAAAGGATGTCCAGGGGGAGAGAAAAAT...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR TCA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCTGCCTTCATTATGGCTaGACTCAAGGTGTTGTCTTT +
Preference number: 4 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLCLHYG*TQGVVF
Trigger: AAAGACAACACCTTGAGTTCAGCCATAATGAAGGCA...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR TCA 90 bp GTAGTTCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAAAGGCTTACAAAGCTTaGAGGGCCACAAGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: VVPPIRNILPTLCLTMTRKAYKA*RATRLV
Trigger: CACCAGCCTTGTGGCCCTTCAAGCTTTGTAAGCCTT...TCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGAACTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR TCA 90 bp TCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATTGGCTTCAGTCTCCTaGAGTCCCAGCTACTCAAGA +
Preference number: 4 (lower is better)
Translates to: SSYQEYPAHSLLNYDKRSLASVS*SPSYSR
Trigger: TCTTGAGTAGCTGGGACTTCAGGAGACTGAAGCCAA...TGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369288.7
CDS-3UTR TCA 90 bp GTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAGGGCCACAAGGCTGGTaGCCAGCATTACCCAGACCT +
Preference number: 4 (lower is better)
Translates to: VMRKILSHSQTHLAVAVLGPQGW*PALPRP
Trigger: AGGTCTGGGTAATGCTGGTCACCAGCCTTGTGGCCC...TAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR TCA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCAGTCAAGGATTACACTaGTTTGCCCCAGCTTATATT +
Preference number: 4 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLSQGLH*FAPAYI
Trigger: AATATAAGCTGGGGCAAATCAGTGTAATCCTTGACT...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR GCA 90 bp CTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGAATCCCCTGTGCCCTGTTaGATTCTTCTCTGTGCCTAT +
Preference number: 4 (lower is better)
Translates to: LPTLCLTMTRGHLSKEKESPVPC*ILLCAY
Trigger: ATAGGCACAGAGAAGAATGCAACAGGGCACAGGGGA...TTCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR GCA 90 bp CTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGAAGGAAGAAGGCAAGTTTaGCCTGATGGTGAGGAGCAA +
Preference number: 4 (lower is better)
Translates to: LPTLCLTMTRGHLSKEKEGRRQV*PDGEEQ
Trigger: TTGCTCCTCACCATCAGGGCAAACTTGCCTTCTTCC...TTCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CCA 90 bp CACAAATCTTCCTCTTCCTCCAGCAGTGCTGTATGGATGTTGTTGAATGTTGAGCTCTGCTGGTATCCTTaGCTTCAGTCTCCTGAAGTC +
Preference number: 4 (lower is better)
Translates to: HKSSSSSSSAVWMLLNVELCWYP*LQSPEV
Trigger: GACTTCAGGAGACTGAAGCCAAGGATACCAGCAGAG...CTCAACATTCAACAACATCCATACAGCACTGCTGGAGGAAGAGGAAGATTTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369288.7
CDS-3UTR TCA 90 bp TCTGTGCCTATTGTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTACTGGGGGCTCACGTTaGAATGGCTCTCAGTCCTCA +
Preference number: 4 (lower is better)
Translates to: SVPIVMRKILSHSQTHLATGGSR*NGSQSS
Trigger: TGAGGACTGAGAGCCATTTCAACGTGAGCCCCCAGT...AGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTACAATAGGCACAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR TCA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGCAGCCTGGGCTCAGGTaGTCCTCATGCCTTAGCTTG +
Preference number: 4 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLQPGLR*SSCLSL
Trigger: CAAGCTAAGGCATGAGGATCACCTGAGCCCAGGCTG...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR TCA 90 bp TTCATTCCTAATGAGTCTTACCTCCTACCCATTGAAAAGTCTGATTTATCTGTCAAGGGGGCTAGCCTTTaGTCGCTCCTTGCTGGAAGG +
Preference number: 4 (lower is better)
Translates to: FIPNESYLLPIEKSDLSVKGASL*SLLAGR
Trigger: CCTTCCAGCAAGGAGCGATCAAAGGCTAGCCCCCTT...GACAGATAAATCAGACTTTTCAATGGGTAGGAGGTAAGACTCATTAGGAATGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR GCA 90 bp CACAAATCTTCCTCTTCCTCCAGCAGTGCTGTATGGATGTTGTTGAATGTTGAGAGCAAATGTTGGCTCTaGTGGTATCCTTGGCTTCAG +
Preference number: 4 (lower is better)
Translates to: HKSSSSSSSAVWMLLNVESKCWL*WYPWLQ
Trigger: CTGAAGCCAAGGATACCAGCAGAGCCAACATTTGCT...CTCAACATTCAACAACATCCATACAGCACTGCTGGAGGAAGAGGAAGATTTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR GCA 90 bp GTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTACTGGATGTCCACAATTaGCAGCAGGATGGCCAGGGC +
Preference number: 4 (lower is better)
Translates to: VMRKILSHSQTHLAVAVLLDVHN*QQDGQG
Trigger: GCCCTGGCCATCCTGCTGGCAATTGTGGACATCCAG...TAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR GCA 90 bp TCTGTGCCTATTGTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTCTCAAAGGATCTGCCTaGCTTGGCCTCCCAAAGTGC +
Preference number: 4 (lower is better)
Translates to: SVPIVMRKILSHSQTHLALKGSA*LGLPKC
Trigger: GCACTTTGGGAGGCCAAGGCAGGCAGATCCTTTGAG...AGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTACAATAGGCACAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR GCA 90 bp GTGAGCCACCGCACCAGGCCCTATTTAACTTCCTTGTGTCTGTTTCCTGATGAGGAAGGATGTAAGAGGTaGTTTGCATATAGTAGATCA +
Preference number: 4 (lower is better)
Translates to: VSHRTRPYLTSLCLFPDEEGCKR*FAYSRS
Trigger: TGATCTACTATATGCAAAGCACCTCTTACATCCTTC...CTCATCAGGAAACAGACACAAGGAAGTTAAATAGGGCCTGGTGCGGTGGCTCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp CTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGAAGTCAATCACTGGATCTaGCTGTCTTCCTTTCTGTCC +
Preference number: 4 (lower is better)
Translates to: LPTLCLTMTRGHLSKEKEVNHWI*LSSFLS
Trigger: GGACAGAAAGGAAGACAGCCAGATCCAGTGATTGAC...TTCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CCA 90 bp CACAAATCTTCCTCTTCCTCCAGCAGTGCTGTATGGATGTTGTTGAATGTTGAGGTCAATCACTGGATCTaGCTGTCTTCCTTTCTGTCC +
Preference number: 4 (lower is better)
Translates to: HKSSSSSSSAVWMLLNVEVNHWI*LSSFLS
Trigger: GGACAGAAAGGAAGACAGCCAGATCCAGTGATTGAC...CTCAACATTCAACAACATCCATACAGCACTGCTGGAGGAAGAGGAAGATTTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CCA 90 bp CCTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGATGCCAAGTCAATCACTaGATCTGGCTGTCTTCCTTT +
Preference number: 4 (lower is better)
Translates to: PAHSLLNYDKRSSVQRERCQVNH*IWLSSF
Trigger: AAAGGAAGACAGCCAGATCCAGTGATTGACTTGGCA...TCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CCA 90 bp GTAGTTCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAAGTCTGTGGTGCTCTTaGTCTGCACAAATCTTCCTC +
Preference number: 4 (lower is better)
Translates to: VVPPIRNILPTLCLTMTRSLWCS*SAQIFL
Trigger: GAGGAAGATTTGTGCAGACCAAGAGCACCACAGACT...TCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGAACTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CCA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACCCATGTTGCCCAGACTaGCCTCAAACTCCTAGGCTC +
Preference number: 4 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHPCCPD*PQTPRL
Trigger: GAGCCTAGGAGTTTGAGGCCAGTCTGGGCAACATGG...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR TCA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGGCAGGCCCAGGAACTTaGAGCAAATGTTGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLAGPGT*SKCWLC
Trigger: GCAGAGCCAACATTTGCTTCAAGTTCCTGGGCCTGC...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR TCA 90 bp CTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGAACTGTATGGATGTTGTTaGATGTTGAGGTCTGTCTGC +
Preference number: 4 (lower is better)
Translates to: LPTLCLTMTRGHLSKEKELYGCC*MLRSVC
Trigger: GCAGACAGACCTCAACATTCAACAACATCCATACAG...TTCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR GCA 90 bp AAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAAAAGTTTCTCTGGATGTCCACAATTaGCAGCAGGATGGCCAGGGC +
Preference number: 4 (lower is better)
Translates to: KILSHSQTHLAVAVLKVSLDVHN*QQDGQG
Trigger: GCCCTGGCCATCCTGCTGGCAATTGTGGACATCCAG...AGAAACTTTTAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR GCA 90 bp CTGATGAGTAACCAGGGGATGTTTGCTTGCAAGGGTTGTATAAGGTTAGAATCAGTGGTGCTCTTGGTCTaGACAAATCTTCCTCTTCCT +
Preference number: 4 (lower is better)
Translates to: LMSNQGMFACKGCIRLESVVLLV*TNLPLP
Trigger: AGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCAC...TGATTCTAACCTTATACAACCCTTGCAAGCAAACATCCCCTGGTTACTCATCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR GCA 90 bp CACAAATCTTCCTCTTCCTCCAGCAGTGCTGTATGGATGTTGTTGAATGTTGAGAGTTGTAGTCTGTGGTaGTCTTGGTCTGCACAAATC +
Preference number: 4 (lower is better)
Translates to: HKSSSSSSSAVWMLLNVESCSLW*SWSAQI
Trigger: GATTTGTGCAGACCAAGAGCACCACAGACTACAACT...CTCAACATTCAACAACATCCATACAGCACTGCTGGAGGAAGAGGAAGATTTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR GCA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACGGGGTTTTGCCATGTTaGCCAGACTGGCCTCAAACT +
Preference number: 4 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHGVLPC*PDWPQT
Trigger: AGTTTGAGGCCAGTCTGGGCAACATGGCAAAACCCC...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR GCA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGTCACCTGTCCTGAGATaGGTGCGTGATAGGCCCTCA +
Preference number: 4 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLSPVLR*VRDRPS
Trigger: TGAGGGCCTATCACGCACGCATCTCAGGACAGGTGA...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp CTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGAATGCAACGGTGTGACTTaGCTTATGGTGAACATCAAC +
Preference number: 4 (lower is better)
Translates to: LPTLCLTMTRGHLSKEKECNGVT*LMVNIN
Trigger: GTTGATGTTCACCATAAGCCAAGTCACACCGTTGCA...TTCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CCA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACCGGATACCTGACTTCTaGCTTCTGGCACAACACTGG +
Preference number: 4 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHRIPDF*LLAQHW
Trigger: CCAGTGTTGTGCCAGAAGCCAGAAGTCAGGTATCCG...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CCA 90 bp CTGATGAGTAACCAGGGGATGTTTGCTTGCAAGGGTTGTATAAGGTTAGAATCATTCTTGTTCTCAGACTaGGGGCTCACGTTGAAATGG +
Preference number: 4 (lower is better)
Translates to: LMSNQGMFACKGCIRLESFLFSD*GLTLKW
Trigger: CCATTTCAACGTGAGCCCCCAGTCTGAGAACAAGAA...TGATTCTAACCTTATACAACCCTTGCAAGCAAACATCCCCTGGTTACTCATCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp GAAGGATGTAAGAGGTGCTTTGCATATAGTAGATCATTACTGAGTGTAAGGTTTCAACCTCAACCAGCCTaGGCTCAGGTGATCCTCATG +
Preference number: 4 (lower is better)
Translates to: EGCKRCFAYSRSLLSVRFQPQPA*AQVILM
Trigger: CATGAGGATCACCTGAGCCCAGGCTGGTTGAGGTTG...AAACCTTACACTCAGTAATGATCTACTATATGCAAAGCACCTCTTACATCCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR CAA 72 bp TCTGTTCATGCAGTGAGTAGAGGTAGTTGTACTAACTaGCCTCTCTCACAGGCCTTCATTCCTAATGAGTCT +
Preference number: 4 (lower is better)
Translates to: SVHAVSRGSCTN*PLSQAFIPNES
Trigger: AGACTCATTAGGAATGAAGGCCTGTGAGAGAGGCAAGTTAGTACAACTACCTCTACTCACTGCATGAACAGA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR TCA 90 bp CATATATTTATCCGATATTTGAGGACTATACTACCCACTTTGGTGAAAGCTGTTGCAGGCCCAGGAACTTaGAGCAAATGTTGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: HIFIRYLRTILPTLVKAVAGPGT*SKCWLC
Trigger: GCAGAGCCAACATTTGCTTCAAGTTCCTGGGCCTGC...AACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR TCA 90 bp GTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAAAGGCTTACAAAGCTTaGAGGGCCACAAGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: VMRKILSHSQTHLAVAVLKAYKA*RATRLV
Trigger: CACCAGCCTTGTGGCCCTTCAAGCTTTGTAAGCCTT...TAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR TCA 90 bp CTCATGACTGTAAAGGGATTGGAAAAGGAAAGTGGGAACTATTTTATGTATTGCCTTTTGGACATACCTTaGAGGGCCACAAGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: LMTVKGLEKESGNYFMYCLLDIP*RATRLV
Trigger: CACCAGCCTTGTGGCCCTTCAAGGTATGTCCAAAAG...GCAATACATAAAATAGTTCCCACTTTCCTTTTCCAATCCCTTTACAGTCATGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR TCA 90 bp GTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAGCCATCAGCCTTTGCTaGGGAGCCGCATTGTTCAAA +
Preference number: 4 (lower is better)
Translates to: VMRKILSHSQTHLAVAVLAISLC*GAALFK
Trigger: TTTGAACAATGCGGCTCCTCAGCAAAGGCTGATGGC...TAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR TCA 90 bp CTGATGAGTAACCAGGGGATGTTTGCTTGCAAGGGTTGTATAAGGTTAGAATCAAATCTTGAGCAAATCTaGTTCTGGTGGGAGTGGGAA +
Preference number: 4 (lower is better)
Translates to: LMSNQGMFACKGCIRLESNLEQI*FWWEWE
Trigger: TTCCCACTCCCACCAGAATCAGATTTGCTCAAGATT...TGATTCTAACCTTATACAACCCTTGCAAGCAAACATCCCCTGGTTACTCATCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR GCA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACGGAAGAAGGCAAGTTTaGCCTGATGGTGAGGAGCAA +
Preference number: 4 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHGRRQV*PDGEEQ
Trigger: TTGCTCCTCACCATCAGGGCAAACTTGCCTTCTTCC...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CCA 90 bp GTAGTTCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGATCAGCTGTTTTAAACTaGTCTCAGGAGAACAGTCTC +
Preference number: 4 (lower is better)
Translates to: VVPPIRNILPTLCLTMTRSAVLN*SQENSL
Trigger: GAGACTGTTCTCCTGAGACCAGTTTAAAACAGCTGA...TCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGAACTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR TCA 90 bp GTAGTTCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAGAACATCAACTGAGATaGTATTTCACCAACACCATC +
Preference number: 4 (lower is better)
Translates to: VVPPIRNILPTLCLTMTREHQLR*YFTNTI
Trigger: GATGGTGTTGGTGAAATATCATCTCAGTTGATGTTC...TCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGAACTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR TCA 90 bp GAAGGATGTAAGAGGTGCTTTGCATATAGTAGATCATTACTGAGTGTAAGGTTTGTAGGAAGCCTGAACTaGGAGTGCCTTCATTATGGC +
Preference number: 4 (lower is better)
Translates to: EGCKRCFAYSRSLLSVRFVGSLN*ECLHYG
Trigger: GCCATAATGAAGGCACTCTCAGTTCAGGCTTCCTAC...AAACCTTACACTCAGTAATGATCTACTATATGCAAAGCACCTCTTACATCCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR TCA 90 bp GTAGTTCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAAGTCAAGGATTACACTaGTTTGCCCCAGCTTATATT +
Preference number: 4 (lower is better)
Translates to: VVPPIRNILPTLCLTMTRSQGLH*FAPAYI
Trigger: AATATAAGCTGGGGCAAATCAGTGTAATCCTTGACT...TCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGAACTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR TCA 90 bp TCTGTGCCTATTGTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTGGCCAGGCAAAAACCTaGATCAGTTGCTTGTTATGC +
Preference number: 4 (lower is better)
Translates to: SVPIVMRKILSHSQTHLAGQAKT*ISCLLC
Trigger: GCATAACAAGCAACTGATTCAGGTTTTTGCCTGGCC...AGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTACAATAGGCACAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp TTCATTCCTAATGAGTCTTACCTCCTACCCATTGAAAAGTCTGATTTATCTGTCGGCAGTTGTAGTCTGTaGTGCTCTTGGTCTGCACAA +
Preference number: 4 (lower is better)
Translates to: FIPNESYLLPIEKSDLSVGSCSL*CSWSAQ
Trigger: TTGTGCAGACCAAGAGCACCACAGACTACAACTGCC...GACAGATAAATCAGACTTTTCAATGGGTAGGAGGTAAGACTCATTAGGAATGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGCCAACCTTCTCCTCCTaGAGAATAACCAAGGTGGCA +
Preference number: 4 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLPTFSS*RITKVA
Trigger: TGCCACCTTGGTTATTCTCCAGGAGGAGAAGGTTGG...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp TCTCTGTTTTCTTTTGATGACTTGCAAATAAGGGACTGGAATAGGGAATGTTTACCTGTCTCACCAGACTaGATGTCCACAATTGCCAGC +
Preference number: 4 (lower is better)
Translates to: SLFSFDDLQIRDWNRECLPVSPD*MSTIAS
Trigger: GCTGGCAATTGTGGACATCCAGTCTGGTGAGACAGG...TAAACATTCCCTATTCCAGTCCCTTATTTGCAAGTCATCAAAAGAAAACAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp CTCATGACTGTAAAGGGATTGGAAAAGGAAAGTGGGAACTATTTTATGTATTGCCTCTGCTGGTATCCTTaGCTTCAGTCTCGAGACAGA +
Preference number: 4 (lower is better)
Translates to: LMTVKGLEKESGNYFMYCLCWYP*LQSRDR
Trigger: TCTGTCTCGAGACTGAAGCCAAGGATACCAGCAGAG...GCAATACATAAAATAGTTCCCACTTTCCTTTTCCAATCCCTTTACAGTCATGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp GAAGGATGTAAGAGGTGCTTTGCATATAGTAGATCATTACTGAGTGTAAGGTTTAGGTGGTCCTGTTTCTaGAAAGGGGAGGAGTCAATC +
Preference number: 4 (lower is better)
Translates to: EGCKRCFAYSRSLLSVRFRWSCF*KGEESI
Trigger: GATTGACTCCTCCCCTTTCCAGAAACAGGACCACCT...AAACCTTACACTCAGTAATGATCTACTATATGCAAAGCACCTCTTACATCCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp CTGATGAGTAACCAGGGGATGTTTGCTTGCAAGGGTTGTATAAGGTTAGAATCAATAGCTCTGAATTGTTaGCACAGTGGTAAGACAAGG +
Preference number: 4 (lower is better)
Translates to: LMSNQGMFACKGCIRLESIALNC*HSGKTR
Trigger: CCTTGTCTTACCACTGTGCCAACAATTCAGAGCTAT...TGATTCTAACCTTATACAACCCTTGCAAGCAAACATCCCCTGGTTACTCATCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
3UTR CAA 72 bp AAATCTTCCTCTTCCTCCAGCAGTGCTGTATGGATGTaGTTGAATGTTGAGGTCTGTCTGCATTTTCTCATT +
Preference number: 4 (lower is better)
Translates to: KSSSSSSSAVWM*LNVEVCLHFLI
Trigger: AATGAGAAAATGCAGACAGACCTCAACATTCAACAACATCCATACAGCACTGCTGGAGGAAGAGGAAGATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR TCA 90 bp AAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAAAAGTTTCTGTAGGAAGCCTGAACTaGGAGTGCCTTCATTATGGC +
Preference number: 4 (lower is better)
Translates to: KILSHSQTHLAVAVLKVSVGSLN*ECLHYG
Trigger: GCCATAATGAAGGCACTCTCAGTTCAGGCTTCCTAC...AGAAACTTTTAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR TCA 90 bp CATATATTTATCCGATATTTGAGGACTATACTACCCACTTTGGTGAAAGCTGTTGTAGGAAGCCTGAACTaGGAGTGCCTTCATTATGGC +
Preference number: 4 (lower is better)
Translates to: HIFIRYLRTILPTLVKAVVGSLN*ECLHYG
Trigger: GCCATAATGAAGGCACTCTCAGTTCAGGCTTCCTAC...AACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR TCA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACCTGTATGGATGTTGTTaGATGTTGAGGTCTGTCTGC +
Preference number: 4 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHLYGCC*MLRSVC
Trigger: GCAGACAGACCTCAACATTCAACAACATCCATACAG...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR TCA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACGTGCCTTTGGATCAGTaGAACTGGTTTGAACTTTCC +
Preference number: 4 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHVPLDQ*NWFELS
Trigger: GGAAAGTTCAAACCAGTTTCACTGATCCAAAGGCAC...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR GCA 90 bp GTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAAGCAAATGTTGGCTCTaGTGGTATCCTTGGCTTCAG +
Preference number: 4 (lower is better)
Translates to: VMRKILSHSQTHLAVAVLSKCWL*WYPWLQ
Trigger: CTGAAGCCAAGGATACCAGCAGAGCCAACATTTGCT...TAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR GCA 90 bp TCTCTGTTTTCTTTTGATGACTTGCAAATAAGGGACTGGAATAGGGAATGTTTATCCCCTGTGCCCTGTTaGATTCTTCTCTGTGCCTAT +
Preference number: 4 (lower is better)
Translates to: SLFSFDDLQIRDWNRECLSPVPC*ILLCAY
Trigger: ATAGGCACAGAGAAGAATGCAACAGGGCACAGGGGA...TAAACATTCCCTATTCCAGTCCCTTATTTGCAAGTCATCAAAAGAAAACAGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR GCA 90 bp CACAAATCTTCCTCTTCCTCCAGCAGTGCTGTATGGATGTTGTTGAATGTTGAGTGTCCTACCTATCTTTaGTTGTTTTCTCTCTCTTTC +
Preference number: 4 (lower is better)
Translates to: HKSSSSSSSAVWMLLNVECPTYL*LFSLSF
Trigger: GAAAGAGAGAGAAAACAAGCAAAGATAGGTAGGACA...CTCAACATTCAACAACATCCATACAGCACTGCTGGAGGAAGAGGAAGATTTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR GCA 90 bp CACAAATCTTCCTCTTCCTCCAGCAGTGCTGTATGGATGTTGTTGAATGTTGAGATGTTGAGGTCTGTCTaGATTTTCTCATTTTCATGC +
Preference number: 4 (lower is better)
Translates to: HKSSSSSSSAVWMLLNVEMLRSV*IFSFSC
Trigger: GCATGAAAATGAGAAAATGCAGACAGACCTCAACAT...CTCAACATTCAACAACATCCATACAGCACTGCTGGAGGAAGAGGAAGATTTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR GCA 90 bp GTAGTTCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAATGTTGAGGTCTGTCTaGATTTTCTCATTTTCATGC +
Preference number: 4 (lower is better)
Translates to: VVPPIRNILPTLCLTMTRMLRSV*IFSFSC
Trigger: GCATGAAAATGAGAAAATGCAGACAGACCTCAACAT...TCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGAACTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR GCA 90 bp AAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAAAAGTTTCTCCTCATTGCTTGGGGTaGTTACGGCTCTTTTGGACA +
Preference number: 4 (lower is better)
Translates to: KILSHSQTHLAVAVLKVSPHCLG*LRLFWT
Trigger: TGTCCAAAAGAGCCGTAAGCACCCCAAGCAATGAGG...AGAAACTTTTAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp GTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTACTCTGCTGGTATCCTTaGCTTCAGTCTCCTAAAAGC +
Preference number: 4 (lower is better)
Translates to: VMRKILSHSQTHLAVAVLLCWYP*LQSPKS
Trigger: GCTTTTAGGAGACTGAAGCCAAGGATACCAGCAGAG...TAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000235933.10
CDS-3UTR CCA 90 bp TTCATTCCTAATGAGTCTTACCTCCTACCCATTGAAAAGTCTGATTTATCTGTCGTCAATCACTGGATCTaGCTGTCTTCCTTTCTGTCC +
Preference number: 4 (lower is better)
Translates to: FIPNESYLLPIEKSDLSVVNHWI*LSSFLS
Trigger: GGACAGAAAGGAAGACAGCCAGATCCAGTGATTGAC...GACAGATAAATCAGACTTTTCAATGGGTAGGAGGTAAGACTCATTAGGAATGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACTGCCAAGTCAATCACTaGATCTGGCTGTCTTCCTTT +
Preference number: 4 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHCQVNH*IWLSSF
Trigger: AAAGGAAGACAGCCAGATCCAGTGATTGACTTGGCA...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CCA 90 bp GTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAAGTCTGTGGTGCTCTTaGTCTGCACAAATCTTCCTC +
Preference number: 4 (lower is better)
Translates to: VMRKILSHSQTHLAVAVLSLWCS*SAQIFL
Trigger: GAGGAAGATTTGTGCAGACCAAGAGCACCACAGACT...TAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CCA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGAGTCTGTGGTGCTCTTaGTCTGCACAAATCTTCCTC +
Preference number: 4 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLSLWCS*SAQIFL
Trigger: GAGGAAGATTTGTGCAGACCAAGAGCACCACAGACT...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CCA 90 bp CATATATTTATCCGATATTTGAGGACTATACTACCCACTTTGGTGAAAGCTGTTGGCAGTTGTAGTCTGTaGTGCTCTTGGTCTGCACAA +
Preference number: 4 (lower is better)
Translates to: HIFIRYLRTILPTLVKAVGSCSL*CSWSAQ
Trigger: TTGTGCAGACCAAGAGCACCACAGACTACAACTGCC...AACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR TCA 90 bp GAAGGATGTAAGAGGTGCTTTGCATATAGTAGATCATTACTGAGTGTAAGGTTTCTGTATGGATGTTGTTaGATGTTGAGGTCTGTCTGC +
Preference number: 4 (lower is better)
Translates to: EGCKRCFAYSRSLLSVRFLYGCC*MLRSVC
Trigger: GCAGACAGACCTCAACATTCAACAACATCCATACAG...AAACCTTACACTCAGTAATGATCTACTATATGCAAAGCACCTCTTACATCCTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR GCA 90 bp AAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAAAAGTTTCTAGCAAATGTTGGCTCTaGTGGTATCCTTGGCTTCAG +
Preference number: 4 (lower is better)
Translates to: KILSHSQTHLAVAVLKVSSKCWL*WYPWLQ
Trigger: CTGAAGCCAAGGATACCAGCAGAGCCAACATTTGCT...AGAAACTTTTAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR GCA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGCTCCAGACCTGTCCTTaGACAAAAACACTACAAACC +
Preference number: 4 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLLQTCP*TKTLQT
Trigger: GGTTTGTAGTGTTTTTGTGCAAGGACAGGTCTGGAG...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR GCA 90 bp TTCATTCCTAATGAGTCTTACCTCCTACCCATTGAAAAGTCTGATTTATCTGTCCTCTTCCTCCAGCAGTaGTGTATGGATGTTGTTGAA +
Preference number: 4 (lower is better)
Translates to: FIPNESYLLPIEKSDLSVLFLQQ*CMDVVE
Trigger: TTCAACAACATCCATACAGCACTGCTGGAGGAAGAG...GACAGATAAATCAGACTTTTCAATGGGTAGGAGGTAAGACTCATTAGGAATGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR GCA 90 bp GTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAAGTTGTAGTCTGTGGTaGTCTTGGTCTGCACAAATC +
Preference number: 4 (lower is better)
Translates to: VMRKILSHSQTHLAVAVLSCSLW*SWSAQI
Trigger: GATTTGTGCAGACCAAGAGCACCACAGACTACAACT...TAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR GCA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGGTAGTTGTACTAACTTaGCTCTCTCACAGGCCTTCA +
Preference number: 4 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLVVVLT*LSHRPS
Trigger: TGAAGGCCTGTGAGAGAGGCAAGTTAGTACAACTAC...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGTGCAACGGTGTGACTTaGCTTATGGTGAACATCAAC +
Preference number: 4 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLCNGVT*LMVNIN
Trigger: GTTGATGTTCACCATAAGCCAAGTCACACCGTTGCA...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CCA 90 bp GAAGGATGTAAGAGGTGCTTTGCATATAGTAGATCATTACTGAGTGTAAGGTTTTGCCAAGTCAATCACTaGATCTGGCTGTCTTCCTTT +
Preference number: 4 (lower is better)
Translates to: EGCKRCFAYSRSLLSVRFCQVNH*IWLSSF
Trigger: AAAGGAAGACAGCCAGATCCAGTGATTGACTTGGCA...AAACCTTACACTCAGTAATGATCTACTATATGCAAAGCACCTCTTACATCCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp TCTCTGTTTTCTTTTGATGACTTGCAAATAAGGGACTGGAATAGGGAATGTTTATGCTTACGGCTCTTTTaGACATACCTTGAAGGGCCA +
Preference number: 4 (lower is better)
Translates to: SLFSFDDLQIRDWNRECLCLRLF*TYLEGP
Trigger: TGGCCCTTCAAGGTATGTCCAAAAGAGCCGTAAGCA...TAAACATTCCCTATTCCAGTCCCTTATTTGCAAGTCATCAAAAGAAAACAGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR TCA 90 bp TCTGTGCCTATTGTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTGAACATCAACTGAGATaGTATTTCACCAACACCATC +
Preference number: 4 (lower is better)
Translates to: SVPIVMRKILSHSQTHLAEHQLR*YFTNTI
Trigger: GATGGTGTTGGTGAAATATCATCTCAGTTGATGTTC...AGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTACAATAGGCACAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR TCA 90 bp GAAGGATGTAAGAGGTGCTTTGCATATAGTAGATCATTACTGAGTGTAAGGTTTTGCCTTCATTATGGCTaGACTCAAGGTGTTGTCTTT +
Preference number: 4 (lower is better)
Translates to: EGCKRCFAYSRSLLSVRFCLHYG*TQGVVF
Trigger: AAAGACAACACCTTGAGTTCAGCCATAATGAAGGCA...AAACCTTACACTCAGTAATGATCTACTATATGCAAAGCACCTCTTACATCCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR TCA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACAGTCAAGGATTACACTaGTTTGCCCCAGCTTATATT +
Preference number: 4 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHSQGLH*FAPAYI
Trigger: AATATAAGCTGGGGCAAATCAGTGTAATCCTTGACT...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR TCA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACGATGTTGTTGAATGTTaGGGTCTGTCTGCATTTTCT +
Preference number: 4 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHDVVEC*GLSAFS
Trigger: AGAAAATGCAGACAGACCTCAACATTCAACAACATC...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR TCA 90 bp TCTCTGTTTTCTTTTGATGACTTGCAAATAAGGGACTGGAATAGGGAATGTTTACCTCTGTTCATGCAGTaGGTAGAGGTAGTTGTACTA +
Preference number: 4 (lower is better)
Translates to: SLFSFDDLQIRDWNRECLPLFMQ*VEVVVL
Trigger: TAGTACAACTACCTCTACTCACTGCATGAACAGAGG...TAAACATTCCCTATTCCAGTCCCTTATTTGCAAGTCATCAAAAGAAAACAGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR GCA 90 bp AAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAAAAGTTTCTCTCCAGACCTGTCCTTaGACAAAAACACTACAAACC +
Preference number: 4 (lower is better)
Translates to: KILSHSQTHLAVAVLKVSLQTCP*TKTLQT
Trigger: GGTTTGTAGTGTTTTTGTGCAAGGACAGGTCTGGAG...AGAAACTTTTAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR GCA 90 bp CATATATTTATCCGATATTTGAGGACTATACTACCCACTTTGGTGAAAGCTGTTCTCTTCCTCCAGCAGTaGTGTATGGATGTTGTTGAA +
Preference number: 4 (lower is better)
Translates to: HIFIRYLRTILPTLVKAVLFLQQ*CMDVVE
Trigger: TTCAACAACATCCATACAGCACTGCTGGAGGAAGAG...AACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR GCA 90 bp CATATATTTATCCGATATTTGAGGACTATACTACCCACTTTGGTGAAAGCTGTTCCTTTGATCGCTCCTTaGTGGAAGGAACAATCAAAG +
Preference number: 4 (lower is better)
Translates to: HIFIRYLRTILPTLVKAVPLIAP*WKEQSK
Trigger: CTTTGATTGTTCCTTCCAGCAAGGAGCGATCAAAGG...AACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp AAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAAAAGTTTCTAAATGTTGGCTCTGCTaGTATCCTTGGCTTCAGTCT +
Preference number: 4 (lower is better)
Translates to: KILSHSQTHLAVAVLKVSKCWLC*YPWLQS
Trigger: AGACTGAAGCCAAGGATACCAGCAGAGCCAACATTT...AGAAACTTTTAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CCA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGTCAGCTGTTTTAAACTaGTCTCAGGAGAACAGTCTC +
Preference number: 4 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLSAVLN*SQENSL
Trigger: GAGACTGTTCTCCTGAGACCAGTTTAAAACAGCTGA...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CCA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACGTTCTGTTTATTTACTaGAGCTTAGGAGGGAAGAAG +
Preference number: 4 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHVLFIY*SLGGKK
Trigger: CTTCTTCCCTCCTAAGCTCCAGTAAATAAACAGAAC...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
3UTR CAA 72 bp TCATGTTTCCTCCTGAAAACTGGCATAGGCTTAAATTaGGAAGATCCTTACCAAGGATTACAGATAAGGTCT +
Preference number: 4 (lower is better)
Translates to: SCFLLKTGIGLN*EDPYQGLQIRS
Trigger: AGACCTTATCTGTAATCCTTGGTAAGGATCTTCCAAATTTAAGCCTATGCCAGTTTTCAGGAGGAAACATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR TCA 90 bp CATATATTTATCCGATATTTGAGGACTATACTACCCACTTTGGTGAAAGCTGTTTGCCTTCATTATGGCTaGACTCAAGGTGTTGTCTTT +
Preference number: 4 (lower is better)
Translates to: HIFIRYLRTILPTLVKAVCLHYG*TQGVVF
Trigger: AAAGACAACACCTTGAGTTCAGCCATAATGAAGGCA...AACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR TCA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGGATGTTGTTGAATGTTaGGGTCTGTCTGCATTTTCT +
Preference number: 4 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLDVVEC*GLSAFS
Trigger: AGAAAATGCAGACAGACCTCAACATTCAACAACATC...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR TCA 90 bp GTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTATGGTGTTTCTGGACCTaGAAAAGCATGTGTACTATT +
Preference number: 4 (lower is better)
Translates to: VMRKILSHSQTHLAVAVLWCFWT*KSMCTI
Trigger: AATAGTACACATGCTTTTTCAGGTCCAGAAACACCA...TAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR GCA 90 bp AAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAAAAGTTTCTCAGGGGATGTTTGCTTaGAAGGGTTGTATAAGGTTA +
Preference number: 4 (lower is better)
Translates to: KILSHSQTHLAVAVLKVSQGMFA*KGCIRL
Trigger: TAACCTTATACAACCCTTGCAAGCAAACATCCCCTG...AGAAACTTTTAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp GTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAGTTCTGTTTATTTACTaGAGCTTAGGAGGGAAGAAG +
Preference number: 4 (lower is better)
Translates to: VMRKILSHSQTHLAVAVLVLFIY*SLGGKK
Trigger: CTTCTTCCCTCCTAAGCTCCAGTAAATAAACAGAAC...TAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CCA 90 bp CATATATTTATCCGATATTTGAGGACTATACTACCCACTTTGGTGAAAGCTGTTTTGATCGCTCCTTGCTaGAAGGAACAATCAAAGAAG +
Preference number: 4 (lower is better)
Translates to: HIFIRYLRTILPTLVKAVLIAPC*KEQSKK
Trigger: CTTCTTTGATTGTTCCTTCCAGCAAGGAGCGATCAA...AACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR GCA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGTGTCCTACCTATCTTTaGTTGTTTTCTCTCTCTTTC +
Preference number: 4 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLCPTYL*LFSLSF
Trigger: GAAAGAGAGAGAAAACAAGCAAAGATAGGTAGGACA...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR GCA 90 bp GAAGGATGTAAGAGGTGCTTTGCATATAGTAGATCATTACTGAGTGTAAGGTTTATGTTGAGGTCTGTCTaGATTTTCTCATTTTCATGC +
Preference number: 4 (lower is better)
Translates to: EGCKRCFAYSRSLLSVRFMLRSV*IFSFSC
Trigger: GCATGAAAATGAGAAAATGCAGACAGACCTCAACAT...AAACCTTACACTCAGTAATGATCTACTATATGCAAAGCACCTCTTACATCCTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp CATATATTTATCCGATATTTGAGGACTATACTACCCACTTTGGTGAAAGCTGTTGTTCTGTTTATTTACTaGAGCTTAGGAGGGAAGAAG +
Preference number: 4 (lower is better)
Translates to: HIFIRYLRTILPTLVKAVVLFIY*SLGGKK
Trigger: CTTCTTCCCTCCTAAGCTCCAGTAAATAAACAGAAC...AACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CCA 90 bp CATATATTTATCCGATATTTGAGGACTATACTACCCACTTTGGTGAAAGCTGTTTTAATATACTCAATCTaGCCATCAGCCTTTGCTGAG +
Preference number: 4 (lower is better)
Translates to: HIFIRYLRTILPTLVKAVLIYSI*PSAFAE
Trigger: CTCAGCAAAGGCTGATGGCCAGATTGAGTATATTAA...AACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR TCA 90 bp AAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAAAAGTTTCTTCTTCCTCTAATAGCTaGAAATCTGTTGCTTCAACT +
Preference number: 4 (lower is better)
Translates to: KILSHSQTHLAVAVLKVSSSSNS*KSVAST
Trigger: AGTTGAAGCAACAGATTTTCAGCTATTAGAGGAAGA...AGAAACTTTTAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR GCA 90 bp CATATATTTATCCGATATTTGAGGACTATACTACCCACTTTGGTGAAAGCTGTTAGGATCTGTATTAATTaGTGTGACGGGCAACAATTA +
Preference number: 4 (lower is better)
Translates to: HIFIRYLRTILPTLVKAVRICIN*CDGQQL
Trigger: TAATTGTTGCCCGTCACAGCAATTAATACAGATCCT...AACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp CATATATTTATCCGATATTTGAGGACTATACTACCCACTTTGGTGAAAGCTGTTTTTCCTCCTGAAAACTaGCATAGGCTTAAATTTGGA +
Preference number: 4 (lower is better)
Translates to: HIFIRYLRTILPTLVKAVFPPEN*HRLKFG
Trigger: TCCAAATTTAAGCCTATGCCAGTTTTCAGGAGGAAA...AACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp TCTCTGTTTTCTTTTGATGACTTGCAAATAAGGGACTGGAATAGGGAATGTTTATTTTACTGGTTACAGTaGCCTAACCAAGGGAATTTA +
Preference number: 4 (lower is better)
Translates to: SLFSFDDLQIRDWNRECLFYWLQ*PNQGNL
Trigger: TAAATTCCCTTGGTTAGGCCACTGTAACCAGTAAAA...TAAACATTCCCTATTCCAGTCCCTTATTTGCAAGTCATCAAAAGAAAACAGAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp TCTCTGTTTTCTTTTGATGACTTGCAAATAAGGGACTGGAATAGGGAATGTTTATGCTCTAGGATGACTTaGGAATCAAAGATAGTAACT +
Preference number: 4 (lower is better)
Translates to: SLFSFDDLQIRDWNRECLCSRMT*ESKIVT
Trigger: AGTTACTATCTTTGATTCCCAAGTCATCCTAGAGCA...TAAACATTCCCTATTCCAGTCCCTTATTTGCAAGTCATCAAAAGAAAACAGAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CCA 90 bp CTCATGACTGTAAAGGGATTGGAAAAGGAAAGTGGGAACTATTTTATGTATTGCAGGCTTACAAAGCTGTaGAAAGAAAGTTTGTATTAC +
Preference number: 4 (lower is better)
Translates to: LMTVKGLEKESGNYFMYCRLTKL*KESLYY
Trigger: GTAATACAAACTTTCTTTCCACAGCTTTGTAAGCCT...GCAATACATAAAATAGTTCCCACTTTCCTTTTCCAATCCCTTTACAGTCATGAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS CCA 90 bp AGTTCCCTGTCTCACCAGACTGGATGTCCACAATTGCCAGCAGGATaGCCAGGGCACAGCAGCCTCTGCCGGGTTCCAACAGCATCCTGC +
Preference number: 5 (lower is better)
Translates to: SSLSHQTGCPQLPAG*PGHSSLCRVPTASC
Trigger: GCAGGATGCTGTTGGAACCCGGCAGAGGCTGCTGTGCCCTGGCCATCCTGCTGGCAATTGTGGACATCCAGTCTGGTGAGACAGGGAACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS GCA 90 bp CGTCACTGTGTAGTTCCCTGTCTCACCAGACTGGATGTCCACAATTaGCAGCAGGATGGCCAGGGCACAGCAGCCTCTGCCGGGTTCCAA +
Preference number: 5 (lower is better)
Translates to: RHCVVPCLTRLDVHN*QQDGQGTAASAGFQ
Trigger: TTGGAACCCGGCAGAGGCTGCTGTGCCCTGGCCATCCTGCTGGCAATTGTGGACATCCAGTCTGGTGAGACAGGGAACTACACAGTGACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000584442.2
ENST00000616463.1
CDS TCA 90 bp CGGGTTCCAACAGCATCCTGCACGCTGTCAGCAGGCCCAGGAACTTaGAGCAAATGTTGGCTCTGCTGGTATCCTTGGCTTCAGTCTCCT +
Preference number: 5 (lower is better)
Translates to: RVPTASCTLSAGPGT*SKCWLCWYPWLQSP
Trigger: AGGAGACTGAAGCCAAGGATACCAGCAGAGCCAACATTTGCTTCAAGTTCCTGGGCCTGCTGACAGCGTGCAGGATGCTGTTGGAACCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS TCA 90 bp CGGGTTCCAACAGCATCCTGCACGCTGTCAGCAGGCCCAGGAACTTaGAGCAAATGTTGGCTCTGCTGGTATCCTTGGCTTCAGTCTCGA +
Preference number: 5 (lower is better)
Translates to: RVPTASCTLSAGPGT*SKCWLCWYPWLQSR
Trigger: TCGAGACTGAAGCCAAGGATACCAGCAGAGCCAACATTTGCTTCAAGTTCCTGGGCCTGCTGACAGCGTGCAGGATGCTGTTGGAACCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS GCA 90 bp GGAGGAGCCCGGGAGTTCACGGATGTAGTGAGGTATGATCTTCACTaGACTCTGGCCTGGTTGACAGTGAGACCCTCGAGACAGAAGTTC +
Preference number: 5 (lower is better)
Translates to: GGAREFTDVVRYDLH*TLAWLTVRPSRQKF
Trigger: GAACTTCTGTCTCGAGGGTCTCACTGTCAACCAGGCCAGAGTGCAGTGAAGATCATACCTCACTACATCCGTGAACTCCCGGGCTCCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369288.7
CDS-3UTR CAA 90 bp GTGAGCCACCGCACCAGGCCCTATTTAACTTCCTTGTGTCTGTTTCCTGATGAGGACTGGGGGCTCACGTaGAAATGGCTCTCAGTCCTC +
Preference number: 5 (lower is better)
Translates to: VSHRTRPYLTSLCLFPDEDWGLT*KWLSVL
Trigger: GAGGACTGAGAGCCATTTCAACGTGAGCCCCCAGTC...CTCATCAGGAAACAGACACAAGGAAGTTAAATAGGGCCTGGTGCGGTGGCTCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp CCTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGAACTGGATGTCCACAATaGCCAGCAGGATGGCCAGGG +
Preference number: 5 (lower is better)
Translates to: PAHSLLNYDKRSSVQRERTGCPQ*PAGWPG
Trigger: CCCTGGCCATCCTGCTGGCAATTGTGGACATCCAGT...TCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CAA 90 bp TCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAGGTCAACTGGATGTCCACAATaGCCAGCAGGATGGCCAGGG +
Preference number: 5 (lower is better)
Translates to: SSYQEYPAHSLLNYDKRSTGCPQ*PAGWPG
Trigger: CCCTGGCCATCCTGCTGGCAATTGTGGACATCCAGT...TGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CAA 90 bp GTGAGCCACCGCACCAGGCCCTATTTAACTTCCTTGTGTCTGTTTCCTGATGAGTCTTTTGGACATACCTaGAAGGGCCACAAGGCTGGT +
Preference number: 5 (lower is better)
Translates to: VSHRTRPYLTSLCLFPDESFGHT*KGHKAG
Trigger: ACCAGCCTTGTGGCCCTTCAAGGTATGTCCAAAAGA...CTCATCAGGAAACAGACACAAGGAAGTTAAATAGGGCCTGGTGCGGTGGCTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS CCA 90 bp TTTCCTGTGGATAGCCAGGGCTTGAGTAACATTTTTCTCTCCCCCTaGACATCCTTTCCAACCTTCTCCTCCTGGAGAATAACCAAGGTG +
Preference number: 5 (lower is better)
Translates to: FPVDSQGLSNIFLSP*TSFPTFSSWRITKV
Trigger: CACCTTGGTTATTCTCCAGGAGGAGAAGGTTGGAAAGGATGTCCAGGGGGAGAGAAAAATGTTACTCAAGCCCTGGCTATCCACAGGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000401557.7
ENST00000616463.1
CDS CCA 90 bp TGGCTTCAGTCTCGAGACAGAAGTTCTTCTTTCTTGTTCTCAGACTaGGGGCTCACGTTGAAATGGCTCTCAGTCCTCAGATTGTCCTTG +
Preference number: 5 (lower is better)
Translates to: WLQSRDRSSSFLFSD*GLTLKWLSVLRLSL
Trigger: CAAGGACAATCTGAGGACTGAGAGCCATTTCAACGTGAGCCCCCAGTCTGAGAACAAGAAAGAAGAACTTCTGTCTCGAGACTGAAGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp CTGGGCAGTTGTAGTCTGTGGTGCTCTTGGTCTGCACAAATCTTCCTCTTCCTCAACTTGAAGCAAATGTaGGCTCTGCTGGTATCCTTG +
Preference number: 5 (lower is better)
Translates to: LGSCSLWCSWSAQIFLFLNLKQM*ALLVSL
Trigger: CAAGGATACCAGCAGAGCCAACATTTGCTTCAAGTT...GAGGAAGAGGAAGATTTGTGCAGACCAAGAGCACCACAGACTACAACTGCCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CAA 90 bp TCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAGGTCACAAGGCTTACAAAGCTaGAAGGGCCACAAGGCTGGT +
Preference number: 5 (lower is better)
Translates to: SSYQEYPAHSLLNYDKRSQGLQS*KGHKAG
Trigger: ACCAGCCTTGTGGCCCTTCAAGCTTTGTAAGCCTTG...TGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CAA 90 bp GTGAGCCACCGCACCAGGCCCTATTTAACTTCCTTGTGTCTGTTTCCTGATGAGGCTGTATGGATGTTGTaGAATGTTGAGGTCTGTCTG +
Preference number: 5 (lower is better)
Translates to: VSHRTRPYLTSLCLFPDEAVWML*NVEVCL
Trigger: CAGACAGACCTCAACATTCAACAACATCCATACAGC...CTCATCAGGAAACAGACACAAGGAAGTTAAATAGGGCCTGGTGCGGTGGCTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp CACAAATCTTCCTCTTCCTCCAGCAGTGCTGTATGGATGTTGTTGAATGTTGAGTGGGGTTTTGCCATGTaGCCCAGACTGGCCTCAAAC +
Preference number: 5 (lower is better)
Translates to: HKSSSSSSSAVWMLLNVEWGFAM*PRLASN
Trigger: GTTTGAGGCCAGTCTGGGCAACATGGCAAAACCCCA...CTCAACATTCAACAACATCCATACAGCACTGCTGGAGGAAGAGGAAGATTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp GTGAGCCACCGCACCAGGCCCTATTTAACTTCCTTGTGTCTGTTTCCTGATGAGATAGCTGAAAATCTGTaGCTTCAACTTGTAGCCCTC +
Preference number: 5 (lower is better)
Translates to: VSHRTRPYLTSLCLFPDEIAENL*LQLVAL
Trigger: GAGGGCTACAAGTTGAAGCAACAGATTTTCAGCTAT...CTCATCAGGAAACAGACACAAGGAAGTTAAATAGGGCCTGGTGCGGTGGCTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp TCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAGGTCAGTGCAACGGTGTGACTaGGCTTATGGTGAACATCAA +
Preference number: 5 (lower is better)
Translates to: SSYQEYPAHSLLNYDKRSVQRCD*AYGEHQ
Trigger: TTGATGTTCACCATAAGCCAAGTCACACCGTTGCAC...TGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CAA 90 bp CACAAATCTTCCTCTTCCTCCAGCAGTGCTGTATGGATGTTGTTGAATGTTGAGATAATAGCACCCTCATaGCTTGGGGTGCTTACGGCT +
Preference number: 5 (lower is better)
Translates to: HKSSSSSSSAVWMLLNVEIIAPS*LGVLTA
Trigger: AGCCGTAAGCACCCCAAGCAATGAGGGTGCTATTAT...CTCAACATTCAACAACATCCATACAGCACTGCTGGAGGAAGAGGAAGATTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS CCA 90 bp TTCTTATGCCATACAGTACAGATTAAGTTTAGTCGCGTTCCTTCCTaGGAAGCTGAGCTGGTGATGTTAATGCATCCACCAGACTGGATG +
Preference number: 5 (lower is better)
Translates to: FLCHTVQIKFSRVPS*EAELVMLMHPPDWM
Trigger: CATCCAGTCTGGTGGATGCATTAACATCACCAGCTCAGCTTCCCAGGAAGGAACGCGACTAAACTTAATCTGTACTGTATGGCATAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000401557.7
CDS CCA 90 bp CAGACCTTTTCTTGTAGGAAGCCTGAACTGAGAGTGCCTTCATTATaGCTGAACTCAAGGTGTTGTCTTTGTTTCAATCCCGTCACTGTG +
Preference number: 5 (lower is better)
Translates to: QTFSCRKPELRVPSL*LNSRCCLCFNPVTV
Trigger: CACAGTGACGGGATTGAAACAAAGACAACACCTTGAGTTCAGCCATAATGAAGGCACTCTCAGTTCAGGCTTCCTACAAGAAAAGGTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000401557.7
ENST00000584442.2
ENST00000616463.1
CDS-3UTR CAA 90 bp GTAGTTCCTCCTATCAGGAATATCCTGCCCACTCTCTGCTTAACTATGACAAGAAACTTGAAGCAAATGTaGGCTCTGCTGGTATCCTTG +
Preference number: 5 (lower is better)
Translates to: VVPPIRNILPTLCLTMTRNLKQM*ALLVSL
Trigger: CAAGGATACCAGCAGAGCCAACATTTGCTTCAAGTT...TCTTGTCATAGTTAAGCAGAGAGTGGGCAGGATATTCCTGATAGGAGGAACTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CAA 90 bp CTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGAACTCAAGGTGTTGTCTTaGTTTCAATCCCGTCACTGT +
Preference number: 5 (lower is better)
Translates to: LPTLCLTMTRGHLSKEKELKVLS*FQSRHC
Trigger: ACAGTGACGGGATTGAAACAAAGACAACACCTTGAG...TTCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CAA 90 bp CATATATTTATCCGATATTTGAGGACTATACTACCCACTTTGGTGAAAGCTGTTTGCACTCTGGCCTGGTaGACAGTGAGACCCTCGAGA +
Preference number: 5 (lower is better)
Translates to: HIFIRYLRTILPTLVKAVCTLAW*TVRPSR
Trigger: TCTCGAGGGTCTCACTGTCAACCAGGCCAGAGTGCA...AACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369288.7
CDS TCA 90 bp ACTGTGCAACGGTGTGACTTGGCTTATGGTGAACATCAACTGAGATaGTATTTCACCAACACCATCTATCCCAGGATCCCTTTTAAGTCT +
Preference number: 5 (lower is better)
Translates to: TVQRCDLAYGEHQLR*YFTNTIYPRIPFKS
Trigger: AGACTTAAAAGGGATCCTGGGATAGATGGTGTTGGTGAAATATCATCTCAGTTGATGTTCACCATAAGCCAAGTCACACCGTTGCACAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000401557.7
CDS GCA 90 bp TCCTTGCACAAAAACACTACAAACCCCTCAGCCTCTTCTTTCTTATaGCATACAGTACAGATTAAGTTTAGTCGCGTTCCTTCCTGGGAA +
Preference number: 5 (lower is better)
Translates to: SLHKNTTNPSASSFL*HTVQIKFSRVPSWE
Trigger: TTCCCAGGAAGGAACGCGACTAAACTTAATCTGTACTGTATGGCATAAGAAAGAAGAGGCTGAGGGGTTTGTAGTGTTTTTGTGCAAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000401557.7
CDS-3UTR CAA 90 bp CCTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGAAAGGATTACACTGATTaGCCCCAGCTTATATTTCCA +
Preference number: 5 (lower is better)
Translates to: PAHSLLNYDKRSSVQRERKDYTD*PQLIFP
Trigger: TGGAAATATAAGCTGGGGCAAATCAGTGTAATCCTT...TCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CAA 90 bp CACAAATCTTCCTCTTCCTCCAGCAGTGCTGTATGGATGTTGTTGAATGTTGAGAGTGCTGTATGGATGTaGTTGAATGTTGAGGTCTGT +
Preference number: 5 (lower is better)
Translates to: HKSSSSSSSAVWMLLNVESAVWM*LNVEVC
Trigger: ACAGACCTCAACATTCAACAACATCCATACAGCACT...CTCAACATTCAACAACATCCATACAGCACTGCTGGAGGAAGAGGAAGATTTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CAA 90 bp CTGCCCACTCTCTGCTTAACTATGACAAGAGGTCATCTGTCCAAAGAGAAAGAAAGTGCTGTATGGATGTaGTTGAATGTTGAGGTCTGT +
Preference number: 5 (lower is better)
Translates to: LPTLCLTMTRGHLSKEKESAVWM*LNVEVC
Trigger: ACAGACCTCAACATTCAACAACATCCATACAGCACT...TTCTTTCTCTTTGGACAGATGACCTCTTGTCATAGTTAAGCAGAGAGTGGGCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CAA 90 bp AAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAAAAGTTTCTGCTCTGCTGGTATCCTaGGCTTCAGTCTCGAGACAG +
Preference number: 5 (lower is better)
Translates to: KILSHSQTHLAVAVLKVSALLVS*ASVSRQ
Trigger: CTGTCTCGAGACTGAAGCCAAGGATACCAGCAGAGC...AGAAACTTTTAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp TCTCTGTTTTCTTTTGATGACTTGCAAATAAGGGACTGGAATAGGGAATGTTTATCTGGCCATCAGCCTTaGCTGAGGAGCCGCATTGTT +
Preference number: 5 (lower is better)
Translates to: SLFSFDDLQIRDWNRECLSGHQP*LRSRIV
Trigger: AACAATGCGGCTCCTCAGCAAAGGCTGATGGCCAGA...TAAACATTCCCTATTCCAGTCCCTTATTTGCAAGTCATCAAAAGAAAACAGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACCTCAAGGTGTTGTCTTaGTTTCAATCCCGTCACTGT +
Preference number: 5 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHLKVLS*FQSRHC
Trigger: ACAGTGACGGGATTGAAACAAAGACAACACCTTGAG...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CAA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACGCTGAACTCAAGGTGTaGTCTTTGTTTCAATCCCGT +
Preference number: 5 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHAELKV*SLFQSR
Trigger: ACGGGATTGAAACAAAGACAACACCTTGAGTTCAGC...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CAA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGAGAAGTTCTTCTTTCTaGTTCTCAGACTGGGGGCTC +
Preference number: 5 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLRSSSF*FSDWGL
Trigger: GAGCCCCCAGTCTGAGAACAAGAAAGAAGAACTTCT...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CAA 90 bp TTCATTCCTAATGAGTCTTACCTCCTACCCATTGAAAAGTCTGATTTATCTGTCGTGGATAGCCAGGGCTaGAGTAACATTTTTCTCTCC +
Preference number: 5 (lower is better)
Translates to: FIPNESYLLPIEKSDLSVVDSQG*SNIFLS
Trigger: GGAGAGAAAAATGTTACTCAAGCCCTGGCTATCCAC...GACAGATAAATCAGACTTTTCAATGGGTAGGAGGTAAGACTCATTAGGAATGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp TCTCTGTTTTCTTTTGATGACTTGCAAATAAGGGACTGGAATAGGGAATGTTTAGGTAGTTGTACTAACTaGCCTCTCTCACAGGCCTTC +
Preference number: 5 (lower is better)
Translates to: SLFSFDDLQIRDWNRECLGSCTN*PLSQAF
Trigger: GAAGGCCTGTGAGAGAGGCAAGTTAGTACAACTACC...TAAACATTCCCTATTCCAGTCCCTTATTTGCAAGTCATCAAAAGAAAACAGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp TTCATTCCTAATGAGTCTTACCTCCTACCCATTGAAAAGTCTGATTTATCTGTCGCCTTTGATCGCTCCTaGCTGGAAGGAACAATCAAA +
Preference number: 5 (lower is better)
Translates to: FIPNESYLLPIEKSDLSVAFDRS*LEGTIK
Trigger: TTTGATTGTTCCTTCCAGCAAGGAGCGATCAAAGGC...GACAGATAAATCAGACTTTTCAATGGGTAGGAGGTAAGACTCATTAGGAATGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp CATATATTTATCCGATATTTGAGGACTATACTACCCACTTTGGTGAAAGCTGTTGTGCAACGGTGTGACTaGGCTTATGGTGAACATCAA +
Preference number: 5 (lower is better)
Translates to: HIFIRYLRTILPTLVKAVVQRCD*AYGEHQ
Trigger: TTGATGTTCACCATAAGCCAAGTCACACCGTTGCAC...AACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS-3UTR CAA 90 bp GAAGGATGTAAGAGGTGCTTTGCATATAGTAGATCATTACTGAGTGTAAGGTTTCTCAAGGTGTTGTCTTaGTTTCAATCCCGTCACTGT +
Preference number: 5 (lower is better)
Translates to: EGCKRCFAYSRSLLSVRFLKVLS*FQSRHC
Trigger: ACAGTGACGGGATTGAAACAAAGACAACACCTTGAG...AAACCTTACACTCAGTAATGATCTACTATATGCAAAGCACCTCTTACATCCTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp GTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAGCTGAACTCAAGGTGTaGTCTTTGTTTCAATCCCGT +
Preference number: 5 (lower is better)
Translates to: VMRKILSHSQTHLAVAVLAELKV*SLFQSR
Trigger: ACGGGATTGAAACAAAGACAACACCTTGAGTTCAGC...TAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CAA 90 bp CTCATGACTGTAAAGGGATTGGAAAAGGAAAGTGGGAACTATTTTATGTATTGCGCTGAACTCAAGGTGTaGTCTTTGTTTCAATCCCGT +
Preference number: 5 (lower is better)
Translates to: LMTVKGLEKESGNYFMYCAELKV*SLFQSR
Trigger: ACGGGATTGAAACAAAGACAACACCTTGAGTTCAGC...GCAATACATAAAATAGTTCCCACTTTCCTTTTCCAATCCCTTTACAGTCATGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp CATATATTTATCCGATATTTGAGGACTATACTACCCACTTTGGTGAAAGCTGTTAGAAGTTCTTCTTTCTaGTTCTCAGACTGGGGGCTC +
Preference number: 5 (lower is better)
Translates to: HIFIRYLRTILPTLVKAVRSSSF*FSDWGL
Trigger: GAGCCCCCAGTCTGAGAACAAGAAAGAAGAACTTCT...AACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CAA 90 bp TCTCTGTTTTCTTTTGATGACTTGCAAATAAGGGACTGGAATAGGGAATGTTTACCAGGGGATGTTTGCTaGCAAGGGTTGTATAAGGTT +
Preference number: 5 (lower is better)
Translates to: SLFSFDDLQIRDWNRECLPGDVC*QGLYKV
Trigger: AACCTTATACAACCCTTGCAAGCAAACATCCCCTGG...TAAACATTCCCTATTCCAGTCCCTTATTTGCAAGTCATCAAAAGAAAACAGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp CTGGGGTACAAAAACGCATATATTTATCCGATATTTGAGGACTATACTACCCACATGCCACTCAAAAAGTaGAAGGTAGGTTTTCCACGT +
Preference number: 5 (lower is better)
Translates to: LGYKNAYIYPIFEDYTTHMPLKK*KVGFPR
Trigger: ACGTGGAAAACCTACCTTCAACTTTTTGAGTGGCAT...GTGGGTAGTATAGTCCTCAAATATCGGATAAATATATGCGTTTTTGTACCCCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp AAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAAAAGTTTCTAACTTGAAGCAAATGTaGGCTCTGCTGGTATCCTTG +
Preference number: 5 (lower is better)
Translates to: KILSHSQTHLAVAVLKVSNLKQM*ALLVSL
Trigger: CAAGGATACCAGCAGAGCCAACATTTGCTTCAAGTT...AGAAACTTTTAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CAA 90 bp GTAATGAGAAAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTACCCTATTTAACTTCCTaGTGTCTGTTTCCTGATGAG +
Preference number: 5 (lower is better)
Translates to: VMRKILSHSQTHLAVAVLPYLTS*CLFPDE
Trigger: CTCATCAGGAAACAGACACAAGGAAGTTAAATAGGG...TAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTTTCTCATTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp GAAGGATGTAAGAGGTGCTTTGCATATAGTAGATCATTACTGAGTGTAAGGTTTGGCATAGGCTTAAATTaGGAAGATCCTTACCAAGGA +
Preference number: 5 (lower is better)
Translates to: EGCKRCFAYSRSLLSVRFGIGLN*EDPYQG
Trigger: TCCTTGGTAAGGATCTTCCAAATTTAAGCCTATGCC...AAACCTTACACTCAGTAATGATCTACTATATGCAAAGCACCTCTTACATCCTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGAAGGATTACACTGATTaGCCCCAGCTTATATTTCCA +
Preference number: 5 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLKDYTD*PQLIFP
Trigger: TGGAAATATAAGCTGGGGCAAATCAGTGTAATCCTT...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CAA 90 bp AAAAGAGAAATGACCAAAGAGGTTAACAAGTATTTAGATGAAGCTGGGCAGTTGCTTACCTCCTACCCATaGAAAAGTCTGATTTATCTG +
Preference number: 5 (lower is better)
Translates to: KREMTKEVNKYLDEAGQLLTSYP*KSLIYL
Trigger: CAGATAAATCAGACTTTTCAATGGGTAGGAGGTAAG...CAACTGCCCAGCTTCATCTAAATACTTGTTAACCTCTTTGGTCATTTCTCTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp AAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAAAAGTTTCTCTACTAAGCCTTGAGTaGGGGAAGAAGGATAAAGAA +
Preference number: 5 (lower is better)
Translates to: KILSHSQTHLAVAVLKVSLLSLE*GKKDKE
Trigger: TTCTTTATCCTTCTTCCCCAACTCAAGGCTTAGTAG...AGAAACTTTTAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp TCTCTGTTTTCTTTTGATGACTTGCAAATAAGGGACTGGAATAGGGAATGTTTAATGACTGTAAAGGGATaGGAAAAGGAAAGTGGGAAC +
Preference number: 5 (lower is better)
Translates to: SLFSFDDLQIRDWNRECLMTVKG*EKESGN
Trigger: GTTCCCACTTTCCTTTTCCAATCCCTTTACAGTCAT...TAAACATTCCCTATTCCAGTCCCTTATTTGCAAGTCATCAAAAGAAAACAGAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp CATATATTTATCCGATATTTGAGGACTATACTACCCACTTTGGTGAAAGCTGTTAAGGATTACACTGATTaGCCCCAGCTTATATTTCCA +
Preference number: 5 (lower is better)
Translates to: HIFIRYLRTILPTLVKAVKDYTD*PQLIFP
Trigger: TGGAAATATAAGCTGGGGCAAATCAGTGTAATCCTT...AACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS-3UTR CAA 90 bp TCTCTGTTTTCTTTTGATGACTTGCAAATAAGGGACTGGAATAGGGAATGTTTAGTTTGCTTGCAAGGGTaGTATAAGGTTAGAATCATC +
Preference number: 5 (lower is better)
Translates to: SLFSFDDLQIRDWNRECLVCLQG*YKVRII
Trigger: GATGATTCTAACCTTATACAACCCTTGCAAGCAAAC...TAAACATTCCCTATTCCAGTCCCTTATTTGCAAGTCATCAAAAGAAAACAGAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp AAGATACTAAGCCATAGTCAGACTCATCTTGCTGTAGCTGTTTTAAAAGTTTCTTGTAAGCATGATAACTaGACCTATGTGGTGTTTCTG +
Preference number: 5 (lower is better)
Translates to: KILSHSQTHLAVAVLKVSCKHDN*TYVVFL
Trigger: CAGAAACACCACATAGGTCAAGTTATCATGCTTACA...AGAAACTTTTAAAACAGCTACAGCAAGATGAGTCTGACTATGGCTTAGTATCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp CTCATGACTGTAAAGGGATTGGAAAAGGAAAGTGGGAACTATTTTATGTATTGCATTAGGGTTGTAATCTaGAGCAAATCTGATTCTGGT +
Preference number: 5 (lower is better)
Translates to: LMTVKGLEKESGNYFMYCIRVVI*SKSDSG
Trigger: ACCAGAATCAGATTTGCTCAAGATTACAACCCTAAT...GCAATACATAAAATAGTTCCCACTTTCCTTTTCCAATCCCTTTACAGTCATGAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS-3UTR CAA 90 bp CATATATTTATCCGATATTTGAGGACTATACTACCCACTTTGGTGAAAGCTGTTGATGTAAGAGGTGCTTaGCATATAGTAGATCATTAC +
Preference number: 5 (lower is better)
Translates to: HIFIRYLRTILPTLVKAVDVRGA*HIVDHY
Trigger: GTAATGATCTACTATATGCAAAGCACCTCTTACATC...AACAGCTTTCACCAAAGTGGGTAGTATAGTCCTCAAATATCGGATAAATATATG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS CCA 72 bp ATCCACCAGACTGGATGTCCACAATTGCCAGCAGGATaGCCAGGGCACAGCAGCCTCTGCCGGGTTCCAACA +
Preference number: 6 (lower is better)
Translates to: IHQTGCPQLPAG*PGHSSLCRVPT
Trigger: TGTTGGAACCCGGCAGAGGCTGCTGTGCCCTGGCCATCCTGCTGGCAATTGTGGACATCCAGTCTGGTGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000401557.7
CDS CCA 72 bp TCTCACCAGACTGGATGTCCACAATTGCCAGCAGGATaGCCAGGGCACAGCAGCCTCTGCCGGGTTCCAACA +
Preference number: 6 (lower is better)
Translates to: SHQTGCPQLPAG*PGHSSLCRVPT
Trigger: TGTTGGAACCCGGCAGAGGCTGCTGTGCCCTGGCCATCCTGCTGGCAATTGTGGACATCCAGTCTGGTGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000584442.2
ENST00000616463.1
CDS TCA 72 bp ACAGCATCCTGCACGCTGTCAGCAGGCCCAGGAACTTaGAGCAAATGTTGGCTCTGCTGGTATCCTTGGCTT +
Preference number: 6 (lower is better)
Translates to: TASCTLSAGPGT*SKCWLCWYPWL
Trigger: AAGCCAAGGATACCAGCAGAGCCAACATTTGCTTCAAGTTCCTGGGCCTGCTGACAGCGTGCAGGATGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000616463.1
CDS GCA 72 bp CGGGAGTTCACGGATGTAGTGAGGTATGATCTTCACTaGACTCTGGCCTGGTTGACAGTGAGACCCTCGAGA +
Preference number: 6 (lower is better)
Translates to: REFTDVVRYDLH*TLAWLTVRPSR
Trigger: TCTCGAGGGTCTCACTGTCAACCAGGCCAGAGTGCAGTGAAGATCATACCTCACTACATCCGTGAACTCCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369288.7
CDS CAA 90 bp AGCATCCTGCACGCTGTCAGCAGGCCCAGGAACTTGAAGCAAATGTaGGCTCTGCTGGTATCCTTGGCTTCAGTCTCGAGACAGAAGTTC +
Preference number: 6 (lower is better)
Translates to: SILHAVSRPRNLKQM*ALLVSLASVSRQKF
Trigger: GAACTTCTGTCTCGAGACTGAAGCCAAGGATACCAGCAGAGCCAACATTTGCTTCAAGTTCCTGGGCCTGCTGACAGCGTGCAGGATGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS CAA 72 bp ATTGCTTGGGGTGCTTACGGCTCTTTTGGACATACCTaGAAGGGCCACAAGGCTGGTGACCAGCATTACCCA +
Preference number: 6 (lower is better)
Translates to: IAWGAYGSFGHT*KGHKAGDQHYP
Trigger: TGGGTAATGCTGGTCACCAGCCTTGTGGCCCTTCAAGGTATGTCCAAAAGAGCCGTAAGCACCCCAAGCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401557.7
ENST00000616463.1
CDS TCA 72 bp ACAAGGCTTACAAAGCTTGAAGGGCCACAAGGCTGGTaGCCAGCATTACCCAGACCTTTTCTTGTAGGAAGC +
Preference number: 6 (lower is better)
Translates to: TRLTKLEGPQGW*PALPRPFLVGS
Trigger: GCTTCCTACAAGAAAAGGTCTGGGTAATGCTGGTCACCAGCCTTGTGGCCCTTCAAGCTTTGTAAGCCTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000235933.10
ENST00000369288.7
CDS TCA 72 bp CTCTTTTGGACATACCTTGAAGGGCCACAAGGCTGGTaGCCAGCATTACCCAGACCTTTTCTTGTAGGAAGC +
Preference number: 6 (lower is better)
Translates to: LFWTYLEGPQGW*PALPRPFLVGS
Trigger: GCTTCCTACAAGAAAAGGTCTGGGTAATGCTGGTCACCAGCCTTGTGGCCCTTCAAGGTATGTCCAAAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401557.7
ENST00000616463.1
CDS CCA 72 bp GATGTAGTGAGGTATGATCTTCACTGCACTCTGGCCTaGTTGACAGTGAGACCCTCGAGACAGAAGTTCTTC +
Preference number: 6 (lower is better)
Translates to: DVVRYDLHCTLA*LTVRPSRQKFF
Trigger: GAAGAACTTCTGTCTCGAGGGTCTCACTGTCAACCAGGCCAGAGTGCAGTGAAGATCATACCTCACTACATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369288.7
CDS CAA 72 bp CCTTGGCTTCAGTCTCGAGACAGAAGTTCTTCTTTCTaGTTCTCAGACTGGGGGCTCACGTTGAAATGGCTC +
Preference number: 6 (lower is better)
Translates to: PWLQSRDRSSSF*FSDWGLTLKWL
Trigger: GAGCCATTTCAACGTGAGCCCCCAGTCTGAGAACAAGAAAGAAGAACTTCTGTCTCGAGACTGAAGCCAAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS TCA 72 bp GTTCTTCTTTCTTGTTCTCAGACTGGGGGCTCACGTTaGAATGGCTCTCAGTCCTCAGATTGTCCTTGCATC +
Preference number: 6 (lower is better)
Translates to: VLLSCSQTGGSR*NGSQSSDCPCI
Trigger: GATGCAAGGACAATCTGAGGACTGAGAGCCATTTCAACGTGAGCCCCCAGTCTGAGAACAAGAAAGAAGAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS GCA 72 bp AACTGGTCTCAGGAGAACAGTCTCCAGACCTGTCCTTaGACAAAAACACTACAAACCCCTCAGCCTCTTCTT +
Preference number: 6 (lower is better)
Translates to: NWSQENSLQTCP*TKTLQTPQPLL
Trigger: AAGAAGAGGCTGAGGGGTTTGTAGTGTTTTTGTGCAAGGACAGGTCTGGAGACTGTTCTCCTGAGACCAGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000401557.7
CDS CCA 72 bp GATAGCCAGGGCTTGAGTAACATTTTTCTCTCCCCCTaGACATCCTTTCCAACCTTCTCCTCCTGGAGAATA +
Preference number: 6 (lower is better)
Translates to: DSQGLSNIFLSP*TSFPTFSSWRI
Trigger: TATTCTCCAGGAGGAGAAGGTTGGAAAGGATGTCCAGGGGGAGAGAAAAATGTTACTCAAGCCCTGGCTATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000401557.7
ENST00000616463.1
CDS CAA 72 bp AAACTGGTCTCAGGAGAACAGTCTCCAGACCTGTCCTaGCACAAAAACACTACAAACCCCTCAGCCTCTTCT +
Preference number: 6 (lower is better)
Translates to: KLVSGEQSPDLS*HKNTTNPSASS
Trigger: AGAAGAGGCTGAGGGGTTTGTAGTGTTTTTGTGCAAGGACAGGTCTGGAGACTGTTCTCCTGAGACCAGTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000401557.7
CDS CAA 72 bp GTAGTGAGGTATGATCTTCACTGCACTCTGGCCTGGTaGACAGTGAGACCCTCGAGACAGAAGTTCTTCTTT +
Preference number: 6 (lower is better)
Translates to: VVRYDLHCTLAW*TVRPSRQKFFF
Trigger: AAAGAAGAACTTCTGTCTCGAGGGTCTCACTGTCAACCAGGCCAGAGTGCAGTGAAGATCATACCTCACTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369288.7
CDS CAA 90 bp TGGATCAGTGAAACTGGTTTGAACTTTCCTGTGGATAGCCAGGGCTaGAGTAACATTTTTCTCTCCCCCTGGACATCCTTTCCAACCTTC +
Preference number: 6 (lower is better)
Translates to: WISETGLNFPVDSQG*SNIFLSPWTSFPTF
Trigger: GAAGGTTGGAAAGGATGTCCAGGGGGAGAGAAAAATGTTACTCAAGCCCTGGCTATCCACAGGAAAGTTCAAACCAGTTTCACTGATCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS CCA 72 bp CCAAGGTGGCAGAAATATAATAGCACCCTCATTGCTTaGGGTGCTTACGGCTCTTTTGGACATACCTTGAAG +
Preference number: 6 (lower is better)
Translates to: PRWQKYNSTLIA*GAYGSFGHTLK
Trigger: CTTCAAGGTATGTCCAAAAGAGCCGTAAGCACCCCAAGCAATGAGGGTGCTATTATATTTCTGCCACCTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401557.7
ENST00000616463.1
CDS CAA 72 bp AGTTCTTCTTTCTTGTTCTCAGACTGGGGGCTCACGTaGAAATGGCTCTCAGTCCTCAGATTGTCCTTGCAT +
Preference number: 6 (lower is better)
Translates to: SSSFLFSDWGLT*KWLSVLRLSLH
Trigger: ATGCAAGGACAATCTGAGGACTGAGAGCCATTTCAACGTGAGCCCCCAGTCTGAGAACAAGAAAGAAGAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000616463.1
CDS TCA 72 bp CGGTGTGACTTGGCTTATGGTGAACATCAACTGAGATaGTATTTCACCAACACCATCTATCCCAGGATCCCT +
Preference number: 6 (lower is better)
Translates to: RCDLAYGEHQLR*YFTNTIYPRIP
Trigger: AGGGATCCTGGGATAGATGGTGTTGGTGAAATATCATCTCAGTTGATGTTCACCATAAGCCAAGTCACACCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000401557.7
CDS CCA 72 bp CATACAGTACAGATTAAGTTTAGTCGCGTTCCTTCCTaGGAAGCTGAGCTGGTGATGTTAATGCATCCACCA +
Preference number: 6 (lower is better)
Translates to: HTVQIKFSRVPS*EAELVMLMHPP
Trigger: TGGTGGATGCATTAACATCACCAGCTCAGCTTCCCAGGAAGGAACGCGACTAAACTTAATCTGTACTGTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000401557.7
CDS CAA 72 bp AGTGCCTTCATTATGGCTGAACTCAAGGTGTTGTCTTaGTTTCAATCCCGTCACTGTGTAGTTCCCTGTCTC +
Preference number: 6 (lower is better)
Translates to: SAFIMAELKVLS*FQSRHCVVPCL
Trigger: GAGACAGGGAACTACACAGTGACGGGATTGAAACAAAGACAACACCTTGAGTTCAGCCATAATGAAGGCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000401557.7
ENST00000584442.2
ENST00000616463.1
CDS CAA 72 bp ACTGAGAGTGCCTTCATTATGGCTGAACTCAAGGTGTaGTCTTTGTTTCAATCCCGTCACTGTGTAGTTCCC +
Preference number: 6 (lower is better)
Translates to: TESAFIMAELKV*SLFQSRHCVVP
Trigger: GGGAACTACACAGTGACGGGATTGAAACAAAGACAACACCTTGAGTTCAGCCATAATGAAGGCACTCTCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000401557.7
ENST00000584442.2
ENST00000616463.1
CDS CAA 72 bp GAAACTGGTTTGAACTTTCCTGTGGATAGCCAGGGCTaGAGTAACATTTTTCTCTCCCCCTGGACATCCTTT +
Preference number: 6 (lower is better)
Translates to: ETGLNFPVDSQG*SNIFLSPWTSF
Trigger: AAAGGATGTCCAGGGGGAGAGAAAAATGTTACTCAAGCCCTGGCTATCCACAGGAAAGTTCAAACCAGTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000401557.7
ENST00000616463.1
CDS CCA 72 bp TCTTGTAGGAAGCCTGAACTGAGAGTGCCTTCATTATaGCTGAACTCAAGGTGTTGTCTTTGTTTCAATCCC +
Preference number: 6 (lower is better)
Translates to: SCRKPELRVPSL*LNSRCCLCFNP
Trigger: GGGATTGAAACAAAGACAACACCTTGAGTTCAGCCATAATGAAGGCACTCTCAGTTCAGGCTTCCTACAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000235933.10
ENST00000369288.7
ENST00000401557.7
ENST00000584442.2
ENST00000616463.1
CDS CAA 72 bp AATAACCAAGGTGGCAGAAATATAATAGCACCCTCATaGCTTGGGGTGCTTACGGCTCTTTTGGACATACCT +
Preference number: 6 (lower is better)
Translates to: NNQGGRNIIAPS*LGVLTALLDIP
Trigger: AGGTATGTCCAAAAGAGCCGTAAGCACCCCAAGCAATGAGGGTGCTATTATATTTCTGCCACCTTGGTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401557.7
ENST00000616463.1