RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for C9ORF72 (Homo sapiens)

Ensembl gene IDs: ENSG00000147894

Ensembl transcript IDs: ENST00000379995.1, ENST00000379997.7, ENST00000380003.8, ENST00000488117.5, ENST00000619707.5, ENST00000644136.1, ENST00000647196.1, ENST00000673600.1

Found 279 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGGCCAGCAGCCCTGCCTACCTCTCTCTTCTGGCCCTAGCGCCTTaGTCCAGCCCATGTGGTTCCAGCAAGCTCCACTTCAAGGGGCCC +
Preference number: 1 (lower is better)
Translates to: LASSPAYLSLLALAP*SSPCGSSKLHFKGP
Trigger: GGGCCCCTTGAAGTGGAGCTTGCTGGAACCACATGGGCTGGAGCAAGGCGCTAGGGCCAGAAGAGAGAGGTAGGCAGGGCTGCTGGCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR CCA 90 bp TGCCTACCTCTCTCTTCTGGCCCTAGCGCCTTGCTCCAGCCCATGTaGTTCCAGCAAGCTCCACTTCAAGGGGCCCACCCTCCAGGGCAT +
Preference number: 1 (lower is better)
Translates to: CLPLSSGPSALLQPM*FQQAPLQGAHPPGH
Trigger: ATGCCCTGGAGGGTGGGCCCCTTGAAGTGGAGCTTGCTGGAACCACATGGGCTGGAGCAAGGCGCTAGGGCCAGAAGAGAGAGGTAGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR GCA 90 bp TGCCACGACCTCTACTGTCTGCTTTCTGTATCACTGCCTCAATCATaGCCCTCCTCTTGCCTTGTCTTGGTGAAGAGTGCCTGGCCAGCA +
Preference number: 1 (lower is better)
Translates to: CHDLYCLLSVSLPQS*PSSCLVLVKSAWPA
Trigger: TGCTGGCCAGGCACTCTTCACCAAGACAAGGCAAGAGGAGGGGCATGATTGAGGCAGTGATACAGAAAGCAGACAGTAGAGGTCGTGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR GCA 90 bp CCACAGGTAGCAAGTAACGGCACACTTGCCACGACCTCTACTGTCTaGTTTCTGTATCACTGCCTCAATCATGCCCCTCCTCTTGCCTTG +
Preference number: 1 (lower is better)
Translates to: PQVASNGTLATTSTV*FLYHCLNHAPPLAL
Trigger: CAAGGCAAGAGGAGGGGCATGATTGAGGCAGTGATACAGAAAGCAGACAGTAGAGGTCGTGGCAAGTGTGCCGTTACTTGCTACCTGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR TCA 90 bp CATTGTCAGAAGTGGCAAATGGATTCTCTCCTCCTAAATGTGGTGTaGCTCTCCCATCAACCACAGGTAGCAAGTAACGGCACACTTGCC +
Preference number: 1 (lower is better)
Translates to: HCQKWQMDSLLLNVV*LSHQPQVASNGTLA
Trigger: GGCAAGTGTGCCGTTACTTGCTACCTGTGGTTGATGGGAGAGTCACACCACATTTAGGAGGAGAGAATCCATTTGCCACTTCTGACAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR CCA 90 bp CCAAGCATCACCAACCAGAGGGCTTCTTCTCTGAGAATTTATACATaGACCTTGAGGTCAGCAAGCAAGGATGATATAAGCCAGAGTTCT +
Preference number: 1 (lower is better)
Translates to: PSITNQRASSLRIYT*TLRSASKDDISQSS
Trigger: AGAACTCTGGCTTATATCATCCTTGCTTGCTGACCTCAAGGTCCATGTATAAATTCTCAGAGAAGAAGCCCTCTGGTTGGTGATGCTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR CCA 90 bp CCTTTCACATTCGAACATGTCATTTTGTTGTGTAAATTTGGTGGGTaGGGGGCAGAAGGGCTCTATTACCTTTATCCCTTTCTTATAAAT +
Preference number: 1 (lower is better)
Translates to: PFTFEHVILLCKFGG*GAEGLYYLYPFLIN
Trigger: ATTTATAAGAAAGGGATAAAGGTAATAGAGCCCTTCTGCCCCCCACCCACCAAATTTACACAACAAAATGACATGTTCGAATGTGAAAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
3UTR TCA 90 bp CAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTGATTCATaGTGGGAAAGCTATTATGACCTTTCACATTCGAACATGTCATTT +
Preference number: 1 (lower is better)
Translates to: QWLSKTSSCPHLSDS*WESYYDLSHSNMSF
Trigger: AAATGACATGTTCGAATGTGAAAGGTCATAATAGCTTTCCCATCATGAATCAGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
3UTR CAA 90 bp CCTGGCCAGCAGCCCTGCCTACCTCTCTCTTCTGGCCCTAGCGCCTaGCTCCAGCCCATGTGGTTCCAGCAAGCTCCACTTCAAGGGGCC +
Preference number: 2 (lower is better)
Translates to: PGQQPCLPLSSGPSA*LQPMWFQQAPLQGA
Trigger: GGCCCCTTGAAGTGGAGCTTGCTGGAACCACATGGGCTGGAGCAAGGCGCTAGGGCCAGAAGAGAGAGGTAGGCAGGGCTGCTGGCCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR-3UTR GCA 90 bp CCACAGGTAGCAAGTAACGGCACACTTGCCACGACCTCTACTGTCTGCTTTCTGCCTGGCCAGCAGCCCTaGCTACCTCTCTCTTCTGGC +
Preference number: 2 (lower is better)
Translates to: PQVASNGTLATTSTVCFLPGQQP*LPLSSG
Trigger: GCCAGAAGAGAGAGGTAGGCAGGGCTGCTGGCCAGG...CAGAAAGCAGACAGTAGAGGTCGTGGCAAGTGTGCCGTTACTTGCTACCTGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR-3UTR TCA 90 bp CATGTGGTTCCAGCAAGCTCCACTTCAAGGGGCCCACCCTCCAGGGCATGTTCCTTTATACATGGACCTTaGGGTCAGCAAGCAAGGATG +
Preference number: 2 (lower is better)
Translates to: HVVPASSTSRGPPSRACSFIHGP*GQQARM
Trigger: CATCCTTGCTTGCTGACCTCAAGGTCCATGTATAAA...GGAACATGCCCTGGAGGGTGGGCCCCTTGAAGTGGAGCTTGCTGGAACCACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR-3UTR TCA 90 bp GCAAGCTCCACTTCAAGGGGCCCACCCTCCAGGGCATGTTCCAAGCATCACCAAGTCAGCAAGCAAGGATaGTATAAGCCAGAGTTCTCT +
Preference number: 2 (lower is better)
Translates to: ASSTSRGPPSRACSKHHQVSKQG*YKPEFS
Trigger: AGAGAACTCTGGCTTATATCATCCTTGCTTGCTGAC...TTGGTGATGCTTGGAACATGCCCTGGAGGGTGGGCCCCTTGAAGTGGAGCTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR-3UTR TCA 90 bp TACTCTTTTCCTGAGTCCAGGACACATGGGGTGAGCTACCCTGATATGACATTTGTTTCCCCACACCACTaGGCTACTTTACCAGCGATC +
Preference number: 2 (lower is better)
Translates to: YSFPESRTHGVSYPDMTFVSPHH*ATLPAI
Trigger: GATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAAC...AAATGTCATATCAGGGTAGCTCACCCCATGTGTCCTGGACTCAGGAAAAGAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR-3UTR GCA 90 bp TACTCTTTTCCTGAGTCCAGGACACATGGGGTGAGCTACCCTGATATGACATTTTCACTGCCTCAATCATaGCCCTCCTCTTGCCTTGTC +
Preference number: 2 (lower is better)
Translates to: YSFPESRTHGVSYPDMTFSLPQS*PSSCLV
Trigger: GACAAGGCAAGAGGAGGGGCATGATTGAGGCAGTGA...AAATGTCATATCAGGGTAGCTCACCCCATGTGTCCTGGACTCAGGAAAAGAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR CAA 90 bp ATCACCAACCAGAGGGCTTCTTCTCTGAGAATTTATACATGGACCTaGAGGTCAGCAAGCAAGGATGATATAAGCCAGAGTTCTCTGCAG +
Preference number: 2 (lower is better)
Translates to: ITNQRASSLRIYTWT*RSASKDDISQSSLQ
Trigger: CTGCAGAGAACTCTGGCTTATATCATCCTTGCTTGCTGACCTCAAGGTCCATGTATAAATTCTCAGAGAAGAAGCCCTCTGGTTGGTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR-3UTR TCA 90 bp CAGAGTTGCAATGATTGCCAAAGCAGGTACATGGTAAGACTTAGCAAGAAGAAAGTTTCCCCACACCACTaGGCTACTTTACCAGCGATC +
Preference number: 2 (lower is better)
Translates to: QSCNDCQSRYMVRLSKKKVSPHH*ATLPAI
Trigger: GATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAAC...TTTCTTCTTGCTAAGTCTTACCATGTACCTGCTTTGGCAATCATTGCAACTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
3UTR-3UTR TCA 90 bp GCAAACAGCAACAACTTCAAAAACATAGGCAGAAATGCAAGAAGGAAGTACTCAGTTTCCCCACACCACTaGGCTACTTTACCAGCGATC +
Preference number: 2 (lower is better)
Translates to: ANSNNFKNIGRNARRKYSVSPHH*ATLPAI
Trigger: GATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAAC...TGAGTACTTCCTTCTTGCATTTCTGCCTATGTTTTTGAAGTTGTTGCTGTTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
3UTR-3UTR TCA 90 bp CAGAGTTGCAATGATTGCCAAAGCAGGTACATGGTAAGACTTAGCAAGAAGAAACAGAATTCTGGAGTATaGTCCAGGGGAACGTTTCCC +
Preference number: 2 (lower is better)
Translates to: QSCNDCQSRYMVRLSKKKQNSGV*SRGTFP
Trigger: GGGAAACGTTCCCCTGGATCATACTCCAGAATTCTG...TTTCTTCTTGCTAAGTCTTACCATGTACCTGCTTTGGCAATCATTGCAACTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
3UTR CAA 90 bp TGGGCCAAATTCAACCTCTGGATGAAATATGTGATTCTTGTGGCATaGTCAGAAGTGGCAAATGGATTCTCTCCTCCTAAATGTGGTGTG +
Preference number: 2 (lower is better)
Translates to: WAKFNLWMKYVILVA*SEVANGFSPPKCGV
Trigger: CACACCACATTTAGGAGGAGAGAATCCATTTGCCACTTCTGACAATGCCACAAGAATCACATATTTCATCCAGAGGTTGAATTTGGCCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR-3UTR TCA 90 bp CATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTGATTCACAGAATTCTGGAGTATaGTCCAGGGGAACGTTTCCC +
Preference number: 2 (lower is better)
Translates to: HLVQWLSKTSSCPHLSDSQNSGV*SRGTFP
Trigger: GGGAAACGTTCCCCTGGATCATACTCCAGAATTCTG...TGAATCAGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
3UTR-3UTR GCA 90 bp GGCCAAATTCAACCTCTGGATGAAATATGTGATTCTTGTGGCATTGTCAGAAGTTGCTTTCTGTATCACTaGCTCAATCATGCCCCTCCT +
Preference number: 2 (lower is better)
Translates to: GQIQPLDEICDSCGIVRSCFLYH*LNHAPP
Trigger: AGGAGGGGCATGATTGAGGCAGTGATACAGAAAGCA...ACTTCTGACAATGCCACAAGAATCACATATTTCATCCAGAGGTTGAATTTGGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR-3UTR TCA 90 bp CAGAGTTGCAATGATTGCCAAAGCAGGTACATGGTAAGACTTAGCAAGAAGAAAGACATTTCTACAGACTaGATCCCAGGGACTAAATCC +
Preference number: 2 (lower is better)
Translates to: QSCNDCQSRYMVRLSKKKDISTD*IPGTKS
Trigger: GGATTTAGTCCCTGGGATTCAGTCTGTAGAAATGTC...TTTCTTCTTGCTAAGTCTTACCATGTACCTGCTTTGGCAATCATTGCAACTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
3UTR-3UTR TCA 90 bp ACTGAGCTACAGTACAACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCATCTCAGAGTTGCAATaGTTGCCAAAGCAGGTACAT +
Preference number: 2 (lower is better)
Translates to: TELQYNSHLVQWLSKTSSISELQ*LPKQVH
Trigger: ATGTACCTGCTTTGGCAATCATTGCAACTCTGAGAT...GCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTTGTACTGTAGCTCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
3UTR-3UTR CCA 90 bp GGCCAAATTCAACCTCTGGATGAAATATGTGATTCTTGTGGCATTGTCAGAAGTCTGAGAATTTATACATaGACCTTGAGGTCAGCAAGC +
Preference number: 2 (lower is better)
Translates to: GQIQPLDEICDSCGIVRSLRIYT*TLRSAS
Trigger: GCTTGCTGACCTCAAGGTCCATGTATAAATTCTCAG...ACTTCTGACAATGCCACAAGAATCACATATTTCATCCAGAGGTTGAATTTGGCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR-3UTR GCA 90 bp GCAAACAGCAACAACTTCAAAAACATAGGCAGAAATGCAAGAAGGAAGTACTCACAGAGTTGCAATGATTaGCAAAGCAGGTACATGGTA +
Preference number: 2 (lower is better)
Translates to: ANSNNFKNIGRNARRKYSQSCND*QSRYMV
Trigger: TACCATGTACCTGCTTTGGCAATCATTGCAACTCTG...TGAGTACTTCCTTCTTGCATTTCTGCCTATGTTTTTGAAGTTGTTGCTGTTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
3UTR-3UTR TCA 90 bp CAGAGTTGCAATGATTGCCAAAGCAGGTACATGGTAAGACTTAGCAAGAAGAAAGCTCTAGTTTTCAGTTaGTTGCAGAAGTATTACAGT +
Preference number: 2 (lower is better)
Translates to: QSCNDCQSRYMVRLSKKKALVFS*LQKYYS
Trigger: ACTGTAATACTTCTGCAATCAACTGAAAACTAGAGC...TTTCTTCTTGCTAAGTCTTACCATGTACCTGCTTTGGCAATCATTGCAACTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
3UTR-3UTR TCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTGACATTTCTACAGACTaGATCCCAGGGACTAAATCC +
Preference number: 2 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGDISTD*IPGTKS
Trigger: GGATTTAGTCCCTGGGATTCAGTCTGTAGAAATGTC...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
3UTR-3UTR TCA 90 bp ACTGAGCTACAGTACAACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCCAAGATGAAAATGACTaGCCAGTGAAATCTGAACTT +
Preference number: 2 (lower is better)
Translates to: TELQYNSHLVQWLSKTSSQDEND*PVKSEL
Trigger: AAGTTCAGATTTCACTGGTCAGTCATTTTCATCTTG...GCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTTGTACTGTAGCTCAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
3UTR-3UTR TCA 90 bp ACTGAGCTACAGTACAACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCCATCTTTCTGATTCATaGTGGGAAAGCTATTATGAC +
Preference number: 2 (lower is better)
Translates to: TELQYNSHLVQWLSKTSSHLSDS*WESYYD
Trigger: GTCATAATAGCTTTCCCATCATGAATCAGAAAGATG...GCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTTGTACTGTAGCTCAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
3UTR-3UTR TCA 90 bp CATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTGATTCACAAGATGAAAATGACTaGCCAGTGAAATCTGAACTT +
Preference number: 2 (lower is better)
Translates to: HLVQWLSKTSSCPHLSDSQDEND*PVKSEL
Trigger: AAGTTCAGATTTCACTGGTCAGTCATTTTCATCTTG...TGAATCAGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
3UTR-3UTR TCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTGCTCTAGTTTTCAGTTaGTTGCAGAAGTATTACAGT +
Preference number: 2 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGALVFS*LQKYYS
Trigger: ACTGTAATACTTCTGCAATCAACTGAAAACTAGAGC...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
3UTR-3UTR TCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTCAAGATGAAAATGACTaGCCAGTGAAATCTGAACTT +
Preference number: 2 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGQDEND*PVKSEL
Trigger: AAGTTCAGATTTCACTGGTCAGTCATTTTCATCTTG...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
3UTR CCA 72 bp CTCTCTTCTGGCCCTAGCGCCTTGCTCCAGCCCATGTaGTTCCAGCAAGCTCCACTTCAAGGGGCCCACCCT +
Preference number: 3 (lower is better)
Translates to: LSSGPSALLQPM*FQQAPLQGAHP
Trigger: AGGGTGGGCCCCTTGAAGTGGAGCTTGCTGGAACCACATGGGCTGGAGCAAGGCGCTAGGGCCAGAAGAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR GCA 72 bp CTTTCTGTATCACTGCCTCAATCATGCCCCTCCTCTTaGCTTGTCTTGGTGAAGAGTGCCTGGCCAGCAGCC +
Preference number: 3 (lower is better)
Translates to: LSVSLPQSCPSS*LVLVKSAWPAA
Trigger: GGCTGCTGGCCAGGCACTCTTCACCAAGACAAGGCAAGAGGAGGGGCATGATTGAGGCAGTGATACAGAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR GCA 72 bp GCAAGTAACGGCACACTTGCCACGACCTCTACTGTCTaGTTTCTGTATCACTGCCTCAATCATGCCCCTCCT +
Preference number: 3 (lower is better)
Translates to: ASNGTLATTSTV*FLYHCLNHAPP
Trigger: AGGAGGGGCATGATTGAGGCAGTGATACAGAAAGCAGACAGTAGAGGTCGTGGCAAGTGTGCCGTTACTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR-3UTR CAA 90 bp ATTGTTCCAAGACAGCTCTGTATTTTAAAGCTCAGCATGGGCCAAATTCAACCTTCTGGCCCTAGCGCCTaGCTCCAGCCCATGTGGTTC +
Preference number: 3 (lower is better)
Translates to: IVPRQLCILKLSMGQIQPSGPSA*LQPMWF
Trigger: GAACCACATGGGCTGGAGCAAGGCGCTAGGGCCAGA...AGGTTGAATTTGGCCCATGCTGAGCTTTAAAATACAGAGCTGTCTTGGAACAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR TCA 72 bp AAGTGGCAAATGGATTCTCTCCTCCTAAATGTGGTGTaGCTCTCCCATCAACCACAGGTAGCAAGTAACGGC +
Preference number: 3 (lower is better)
Translates to: KWQMDSLLLNVV*LSHQPQVASNG
Trigger: GCCGTTACTTGCTACCTGTGGTTGATGGGAGAGTCACACCACATTTAGGAGGAGAGAATCCATTTGCCACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR CCA 72 bp CACAGAGAGAGGGAAGGCAACAGAGGCAGGCTTTGTTaGACACCAAATGAATGTACTGAGCCATTGTTCCAA +
Preference number: 3 (lower is better)
Translates to: HREREGNRGRLC*TPNECTEPLFQ
Trigger: TTGGAACAATGGCTCAGTACATTCATTTGGTGTCCAACAAAGCCTGCCTCTGTTGCCTTCCCTCTCTCTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR-3UTR CAA 90 bp CTGATTCAAGCCATTAAGGCTCTTAGGTTAAACACACTCATGCCTCTGATACTCAGGGGCCATGATTTCTaGTCTGGGATGGAAACTCGG +
Preference number: 3 (lower is better)
Translates to: LIQAIKALRLNTLMPLILRGHDF*SGMETR
Trigger: CCGAGTTTCCATCCCAGACAAGAAATCATGGCCCCT...GAGTATCAGAGGCATGAGTGTGTTTAACCTAAGAGCCTTAATGGCTTGAATCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379997.7
3UTR-3UTR CAA 90 bp ATTGTTCCAAGACAGCTCTGTATTTTAAAGCTCAGCATGGGCCAAATTCAACCTATCATGCCCCTCCTCTaGCCTTGTCTTGGTGAAGAG +
Preference number: 3 (lower is better)
Translates to: IVPRQLCILKLSMGQIQPIMPLL*PCLGEE
Trigger: CTCTTCACCAAGACAAGGCAAGAGGAGGGGCATGAT...AGGTTGAATTTGGCCCATGCTGAGCTTTAAAATACAGAGCTGTCTTGGAACAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR CCA 72 bp ACCAACCAGAGGGCTTCTTCTCTGAGAATTTATACATaGACCTTGAGGTCAGCAAGCAAGGATGATATAAGC +
Preference number: 3 (lower is better)
Translates to: TNQRASSLRIYT*TLRSASKDDIS
Trigger: GCTTATATCATCCTTGCTTGCTGACCTCAAGGTCCATGTATAAATTCTCAGAGAAGAAGCCCTCTGGTTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR-3UTR CAA 90 bp AACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTATTCCTTATAGCCTATaGCAGGCAAACAGCAACAAC +
Preference number: 3 (lower is better)
Translates to: NSHLVQWLSKTSSCPHLSIPYSL*QANSNN
Trigger: GTTGTTGCTGTTTGCCTGCAATAGGCTATAAGGAAT...AGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
3UTR CCA 72 bp ATGACTGAGCTACAGTACAACAGTCATCTAGTTCAGTaGTTGTCTAAAACATCAAGCTGTCCACATCTTTCT +
Preference number: 3 (lower is better)
Translates to: MTELQYNSHLVQ*LSKTSSCPHLS
Trigger: AGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTTGTACTGTAGCTCAGTCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
3UTR-3UTR CAA 90 bp GCAAACAGCAACAACTTCAAAAACATAGGCAGAAATGCAAGAAGGAAGTACTCAGGCTCTAGTTTTCAGTaGATTGCAGAAGTATTACAG +
Preference number: 3 (lower is better)
Translates to: ANSNNFKNIGRNARRKYSGSSFQ*IAEVLQ
Trigger: CTGTAATACTTCTGCAATCAACTGAAAACTAGAGCC...TGAGTACTTCCTTCTTGCATTTCTGCCTATGTTTTTGAAGTTGTTGCTGTTTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
3UTR-3UTR CAA 90 bp CATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTGATTCATTCGAACATGTCATTTaGTTGTGTAAATTTGGTGGG +
Preference number: 3 (lower is better)
Translates to: HLVQWLSKTSSCPHLSDSFEHVI*LCKFGG
Trigger: CCCACCAAATTTACACAACAAAATGACATGTTCGAA...TGAATCAGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
3UTR TCA 72 bp TCTAAAACATCAAGCTGTCCACATCTTTCTGATTCATaGTGGGAAAGCTATTATGACCTTTCACATTCGAAC +
Preference number: 3 (lower is better)
Translates to: SKTSSCPHLSDS*WESYYDLSHSN
Trigger: GTTCGAATGTGAAAGGTCATAATAGCTTTCCCATCATGAATCAGAAAGATGTGGACAGCTTGATGTTTTAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
3UTR-3UTR CAA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTGGCTCTAGTTTTCAGTaGATTGCAGAAGTATTACAG +
Preference number: 3 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGGSSFQ*IAEVLQ
Trigger: CTGTAATACTTCTGCAATCAACTGAAAACTAGAGCC...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR GCA 90 bp GGGCCCACCCTCCAGGGCATGTTCCAAGCATCACCAACCAGAGGGCTTCTTCTCGAACAGCCACAGGTTTaGAAGTGTGAGCTGATGGCA +
Preference number: 4 (lower is better)
Translates to: GPTLQGMFQASPTRGLLLEQPQV*KCELMA
Trigger: TGCCATCAGCTCACACTTGCAAACCTGTGGCTGTTC...GAGAAGAAGCCCTCTGGTTGGTGATGCTTGGAACATGCCCTGGAGGGTGGGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR GCA 90 bp GGGCCCACCCTCCAGGGCATGTTCCAAGCATCACCAACCAGAGGGCTTCTTCTCTCATGCCCCTCCTCTTaGCTTGTCTTGGTGAAGAGT +
Preference number: 4 (lower is better)
Translates to: GPTLQGMFQASPTRGLLLSCPSS*LVLVKS
Trigger: ACTCTTCACCAAGACAAGGCAAGAGGAGGGGCATGA...GAGAAGAAGCCCTCTGGTTGGTGATGCTTGGAACATGCCCTGGAGGGTGGGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
3UTR CAA 72 bp GCTTTCTGTATCACTGCCTCAATCATGCCCCTCCTCTaGCCTTGTCTTGGTGAAGAGTGCCTGGCCAGCAGC +
Preference number: 4 (lower is better)
Translates to: AFCITASIMPLL*PCLGEECLASS
Trigger: GCTGCTGGCCAGGCACTCTTCACCAAGACAAGGCAAGAGGAGGGGCATGATTGAGGCAGTGATACAGAAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR TCA 90 bp CATGTGGTTCCAGCAAGCTCCACTTCAAGGGGCCCACCCTCCAGGGCATGTTCCGTCAGCAAGCAAGGATaGTATAAGCCAGAGTTCTCT +
Preference number: 4 (lower is better)
Translates to: HVVPASSTSRGPPSRACSVSKQG*YKPEFS
Trigger: AGAGAACTCTGGCTTATATCATCCTTGCTTGCTGAC...GGAACATGCCCTGGAGGGTGGGCCCCTTGAAGTGGAGCTTGCTGGAACCACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR GCA 90 bp GCTCCACTTCAAGGGGCCCACCCTCCAGGGCATGTTCCAAGCATCACCAACCAGATAGTCCATATGTGCTaGGATCCCCATTCCAGTTTC +
Preference number: 4 (lower is better)
Translates to: APLQGAHPPGHVPSITNQIVHMC*DPHSSF
Trigger: GAAACTGGAATGGGGATCGCAGCACATATGGACTAT...CTGGTTGGTGATGCTTGGAACATGCCCTGGAGGGTGGGCCCCTTGAAGTGGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CCA 90 bp CCACAGGTAGCAAGTAACGGCACACTTGCCACGACCTCTACTGTCTGCTTTCTGAGCTGGAGATGGCGGTaGGCAAAGAGTCGACATCAC +
Preference number: 4 (lower is better)
Translates to: PQVASNGTLATTSTVCFLSWRWR*AKSRHH
Trigger: GTGATGTCGACTCTTTGCCCACCGCCATCTCCAGCT...CAGAAAGCAGACAGTAGAGGTCGTGGCAAGTGTGCCGTTACTTGCTACCTGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR TCA 90 bp GCTCCACTTCAAGGGGCCCACCCTCCAGGGCATGTTCCAAGCATCACCAACCAGAGAAGAAAGCCTTCATaGCAGCTGTCACCAATATCA +
Preference number: 4 (lower is better)
Translates to: APLQGAHPPGHVPSITNQRRKPS*QLSPIS
Trigger: TGATATTGGTGACAGCTGTCATGAAGGCTTTCTTCT...CTGGTTGGTGATGCTTGGAACATGCCCTGGAGGGTGGGCCCCTTGAAGTGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR TCA 90 bp GCAAGCTCCACTTCAAGGGGCCCACCCTCCAGGGCATGTTCCAAGCATCACCAATTTATACATGGACCTTaGGGTCAGCAAGCAAGGATG +
Preference number: 4 (lower is better)
Translates to: ASSTSRGPPSRACSKHHQFIHGP*GQQARM
Trigger: CATCCTTGCTTGCTGACCTCAAGGTCCATGTATAAA...TTGGTGATGCTTGGAACATGCCCTGGAGGGTGGGCCCCTTGAAGTGGAGCTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR GCA 90 bp TACTCTTTTCCTGAGTCCAGGACACATGGGGTGAGCTACCCTGATATGACATTTCTGGCCCTAGCGCCTTaGTCCAGCCCATGTGGTTCC +
Preference number: 4 (lower is better)
Translates to: YSFPESRTHGVSYPDMTFLALAP*SSPCGS
Trigger: GGAACCACATGGGCTGGAGCAAGGCGCTAGGGCCAG...AAATGTCATATCAGGGTAGCTCACCCCATGTGTCCTGGACTCAGGAAAAGAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CCA 90 bp TATGATCCAGGGGAACGTTTCCCCACACCACTGAGCTACTTTACCAGCGATCATAGCTGGAGATGGCGGTaGGCAAAGAGTCGACATCAC +
Preference number: 4 (lower is better)
Translates to: YDPGERFPTPLSYFTSDHSWRWR*AKSRHH
Trigger: GTGATGTCGACTCTTTGCCCACCGCCATCTCCAGCT...ATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAACGTTCCCCTGGATCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR CCA 90 bp AAGCTCCACTTCAAGGGGCCCACCCTCCAGGGCATGTTCCAAGCATCACCAACCATGTTCATGACAGGGTaGCATCTGCTTCACAGTATT +
Preference number: 4 (lower is better)
Translates to: KLHFKGPTLQGMFQASPTMFMTG*HLLHSI
Trigger: AATACTGTGAAGCAGATGCCACCCTGTCATGAACAT...GGTTGGTGATGCTTGGAACATGCCCTGGAGGGTGGGCCCCTTGAAGTGGAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CCA 90 bp AAGCTCCACTTCAAGGGGCCCACCCTCCAGGGCATGTTCCAAGCATCACCAACCCTGAGAATTTATACATaGACCTTGAGGTCAGCAAGC +
Preference number: 4 (lower is better)
Translates to: KLHFKGPTLQGMFQASPTLRIYT*TLRSAS
Trigger: GCTTGCTGACCTCAAGGTCCATGTATAAATTCTCAG...GGTTGGTGATGCTTGGAACATGCCCTGGAGGGTGGGCCCCTTGAAGTGGAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR TCA 90 bp CAACCACAGGTAGCAAGTAACGGCACACTTGCCACGACCTCTACTGTCTGCTTTCTCCTAAATGTGGTGTaGCTCTCCCATCAACCACAG +
Preference number: 4 (lower is better)
Translates to: QPQVASNGTLATTSTVCFLLNVV*LSHQPQ
Trigger: CTGTGGTTGATGGGAGAGTCACACCACATTTAGGAG...AAAGCAGACAGTAGAGGTCGTGGCAAGTGTGCCGTTACTTGCTACCTGTGGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTAGGCAACAGCTGGAGATaGCGGTGGGCAAAGAGTCGA +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLGNSWR*RWAKSR
Trigger: TCGACTCTTTGCCCACCGCCATCTCCAGCTGTTGCC...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR TCA 90 bp TATGATCCAGGGGAACGTTTCCCCACACCACTGAGCTACTTTACCAGCGATCATCAGAATTCTGGAGTATaGTCCAGGGGAACGTTTCCC +
Preference number: 4 (lower is better)
Translates to: YDPGERFPTPLSYFTSDHQNSGV*SRGTFP
Trigger: GGGAAACGTTCCCCTGGATCATACTCCAGAATTCTG...ATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAACGTTCCCCTGGATCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR GCA 90 bp ATTGTTCCAAGACAGCTCTGTATTTTAAAGCTCAGCATGGGCCAAATTCAACCTCCTGGCCAGCAGCCCTaGCTACCTCTCTCTTCTGGC +
Preference number: 4 (lower is better)
Translates to: IVPRQLCILKLSMGQIQPPGQQP*LPLSSG
Trigger: GCCAGAAGAGAGAGGTAGGCAGGGCTGCTGGCCAGG...AGGTTGAATTTGGCCCATGCTGAGCTTTAAAATACAGAGCTGTCTTGGAACAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR GCA 90 bp CAACCACAGGTAGCAAGTAACGGCACACTTGCCACGACCTCTACTGTCTGCTTTTGCTTTCTGTATCACTaGCTCAATCATGCCCCTCCT +
Preference number: 4 (lower is better)
Translates to: QPQVASNGTLATTSTVCFCFLYH*LNHAPP
Trigger: AGGAGGGGCATGATTGAGGCAGTGATACAGAAAGCA...AAAGCAGACAGTAGAGGTCGTGGCAAGTGTGCCGTTACTTGCTACCTGTGGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CCA 90 bp GTTCCAAGACAGCTCTGTATTTTAAAGCTCAGCATGGGCCAAATTCAACCTCTGGGCAACAGCTGGAGATaGCGGTGGGCAAAGAGTCGA +
Preference number: 4 (lower is better)
Translates to: VPRQLCILKLSMGQIQPLGNSWR*RWAKSR
Trigger: TCGACTCTTTGCCCACCGCCATCTCCAGCTGTTGCC...CAGAGGTTGAATTTGGCCCATGCTGAGCTTTAAAATACAGAGCTGTCTTGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CCA 90 bp CATGTGGTTCCAGCAAGCTCCACTTCAAGGGGCCCACCCTCCAGGGCATGTTCCGCCAAATTCAACCTCTaGATGAAATATGTGATTCTT +
Preference number: 4 (lower is better)
Translates to: HVVPASSTSRGPPSRACSAKFNL*MKYVIL
Trigger: AAGAATCACATATTTCATCCAGAGGTTGAATTTGGC...GGAACATGCCCTGGAGGGTGGGCCCCTTGAAGTGGAGCTTGCTGGAACCACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR TCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTAAGCCATGTCTTCTTCTaGAGTGGCTCTCCAGAAGGC +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLSHVFF*SGSPEG
Trigger: GCCTTCTGGAGAGCCACTTCAGAAGAAGACATGGCT...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR TCA 90 bp CCACAGGTAGCAAGTAACGGCACACTTGCCACGACCTCTACTGTCTGCTTTCTGCAAGGAAAGTACTTCTaGGAGATAAGCCAGGTTTCA +
Preference number: 4 (lower is better)
Translates to: PQVASNGTLATTSTVCFLQGKYF*EISQVS
Trigger: TGAAACCTGGCTTATCTCTCAGAAGTACTTTCCTTG...CAGAAAGCAGACAGTAGAGGTCGTGGCAAGTGTGCCGTTACTTGCTACCTGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR TCA 90 bp CAGAGTTGCAATGATTGCCAAAGCAGGTACATGGTAAGACTTAGCAAGAAGAAAGGCAGCAGGGACGGCTaGCACACCAAGCGTCATCTT +
Preference number: 4 (lower is better)
Translates to: QSCNDCQSRYMVRLSKKKGSRDG*HTKRHL
Trigger: AAGATGACGCTTGGTGTGTCAGCCGTCCCTGCTGCC...TTTCTTCTTGCTAAGTCTTACCATGTACCTGCTTTGGCAATCATTGCAACTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000619707.5
CDS-3UTR CCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTATTGCTCCAGCCCATGTaGTTCCAGCAAGCTCCACTT +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLLLQPM*FQQAPL
Trigger: AAGTGGAGCTTGCTGGAACCACATGGGCTGGAGCAA...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR TCA 90 bp TATGATCCAGGGGAACGTTTCCCCACACCACTGAGCTACTTTACCAGCGATCATTTTCGTCAGTGTAGATaGTCGTATCCTGAGCCATGT +
Preference number: 4 (lower is better)
Translates to: YDPGERFPTPLSYFTSDHFRQCR*SYPEPC
Trigger: ACATGGCTCAGGATACGATCATCTACACTGACGAAA...ATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAACGTTCCCCTGGATCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR TCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTACAGAATTCTGGAGTATaGTCCAGGGGAACGTTTCCC +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLQNSGV*SRGTFP
Trigger: GGGAAACGTTCCCCTGGATCATACTCCAGAATTCTG...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR GCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTAGGAGCATACATGACTTaGCGGAAAGGCAGCACAAAG +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLGAYMT*RKGSTK
Trigger: CTTTGTGCTGCCTTTCCGGCAAGTCATGTATGCTCC...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR CCA 90 bp CAGAGTTGCAATGATTGCCAAAGCAGGTACATGGTAAGACTTAGCAAGAAGAAAGGCAACAGCTGGAGATaGCGGTGGGCAAAGAGTCGA +
Preference number: 4 (lower is better)
Translates to: QSCNDCQSRYMVRLSKKKGNSWR*RWAKSR
Trigger: TCGACTCTTTGCCCACCGCCATCTCCAGCTGTTGCC...TTTCTTCTTGCTAAGTCTTACCATGTACCTGCTTTGGCAATCATTGCAACTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CCA 90 bp TATGATCCAGGGGAACGTTTCCCCACACCACTGAGCTACTTTACCAGCGATCATTACCTGTTCTGTCTTTaGAGCCCAAATGTGCCTTAC +
Preference number: 4 (lower is better)
Translates to: YDPGERFPTPLSYFTSDHYLFCL*SPNVPY
Trigger: GTAAGGCACATTTGGGCTCCAAAGACAGAACAGGTA...ATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAACGTTCCCCTGGATCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR CCA 90 bp TATGATCCAGGGGAACGTTTCCCCACACCACTGAGCTACTTTACCAGCGATCATCCACATCTATGTGTGTaGTGGGATATGGAGCATACA +
Preference number: 4 (lower is better)
Translates to: YDPGERFPTPLSYFTSDHPHLCV*WDMEHT
Trigger: TGTATGCTCCATATCCCACCACACACATAGATGTGG...ATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAACGTTCCCCTGGATCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR CCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTATGTAAATTTGGTGGGTaGGGGGCAGAAGGGCTCTAT +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLCKFGG*GAEGLY
Trigger: ATAGAGCCCTTCTGCCCCCCACCCACCAAATTTACA...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR CCA 90 bp CAACCACAGGTAGCAAGTAACGGCACACTTGCCACGACCTCTACTGTCTGCTTTAGAGGCAGGCTTTGTTaGACACCAAATGAATGTACT +
Preference number: 4 (lower is better)
Translates to: QPQVASNGTLATTSTVCFRGRLC*TPNECT
Trigger: AGTACATTCATTTGGTGTCCAACAAAGCCTGCCTCT...AAAGCAGACAGTAGAGGTCGTGGCAAGTGTGCCGTTACTTGCTACCTGTGGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR TCA 90 bp TATGATCCAGGGGAACGTTTCCCCACACCACTGAGCTACTTTACCAGCGATCATTCTGCTTCACAGTATTaGCATCCACATCTATGTGTG +
Preference number: 4 (lower is better)
Translates to: YDPGERFPTPLSYFTSDHSASQY*HPHLCV
Trigger: CACACATAGATGTGGATGTCAATACTGTGAAGCAGA...ATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAACGTTCCCCTGGATCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR TCA 90 bp TGTTCCAAGACAGCTCTGTATTTTAAAGCTCAGCATGGGCCAAATTCAACCTCTAGCCATGTCTTCTTCTaGAGTGGCTCTCCAGAAGGC +
Preference number: 4 (lower is better)
Translates to: CSKTALYFKAQHGPNSTSSHVFF*SGSPEG
Trigger: GCCTTCTGGAGAGCCACTTCAGAAGAAGACATGGCT...AGAGGTTGAATTTGGCCCATGCTGAGCTTTAAAATACAGAGCTGTCTTGGAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR TCA 90 bp TATGATCCAGGGGAACGTTTCCCCACACCACTGAGCTACTTTACCAGCGATCATATCTCAGAGTTGCAATaGTTGCCAAAGCAGGTACAT +
Preference number: 4 (lower is better)
Translates to: YDPGERFPTPLSYFTSDHISELQ*LPKQVH
Trigger: ATGTACCTGCTTTGGCAATCATTGCAACTCTGAGAT...ATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAACGTTCCCCTGGATCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR GCA 90 bp TATGATCCAGGGGAACGTTTCCCCACACCACTGAGCTACTTTACCAGCGATCATTTACTTTCTCTGCACTaGTACCTACTACAACGGAAC +
Preference number: 4 (lower is better)
Translates to: YDPGERFPTPLSYFTSDHLLSLH*YLLQRN
Trigger: GTTCCGTTGTAGTAGGTAGCAGTGCAGAGAAAGTAA...ATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAACGTTCCCCTGGATCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR GCA 90 bp GTTCCAAGACAGCTCTGTATTTTAAAGCTCAGCATGGGCCAAATTCAACCTCTGGGAGCATACATGACTTaGCGGAAAGGCAGCACAAAG +
Preference number: 4 (lower is better)
Translates to: VPRQLCILKLSMGQIQPLGAYMT*RKGSTK
Trigger: CTTTGTGCTGCCTTTCCGGCAAGTCATGTATGCTCC...CAGAGGTTGAATTTGGCCCATGCTGAGCTTTAAAATACAGAGCTGTCTTGGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR GCA 90 bp TATGATCCAGGGGAACGTTTCCCCACACCACTGAGCTACTTTACCAGCGATCATCAGAGTTGCAATGATTaGCAAAGCAGGTACATGGTA +
Preference number: 4 (lower is better)
Translates to: YDPGERFPTPLSYFTSDHQSCND*QSRYMV
Trigger: TACCATGTACCTGCTTTGGCAATCATTGCAACTCTG...ATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAACGTTCCCCTGGATCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CCA 90 bp CATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTGATTCAGGCAACAGCTGGAGATaGCGGTGGGCAAAGAGTCGA +
Preference number: 4 (lower is better)
Translates to: HLVQWLSKTSSCPHLSDSGNSWR*RWAKSR
Trigger: TCGACTCTTTGCCCACCGCCATCTCCAGCTGTTGCC...TGAATCAGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR CCA 90 bp ATTTATACATGGACCTTGAGGTCAGCAAGCAAGGATGATATAAGCCAGAGTTCTTGTCTTGGCAACAGCTaGAGATGGCGGTGGGCAAAG +
Preference number: 4 (lower is better)
Translates to: IYTWTLRSASKDDISQSSCLGNS*RWRWAK
Trigger: CTTTGCCCACCGCCATCTCCAGCTGTTGCCAAGACA...AGAACTCTGGCTTATATCATCCTTGCTTGCTGACCTCAAGGTCCATGTATAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CCA 90 bp GCCCACGGGTACACAGCATTAATCCAGGGAGTCTGGTTTAAGGGCACAAACTCTACACACTCTATGAAGTaGGAGGTAGAAACTAAGTTC +
Preference number: 4 (lower is better)
Translates to: AHGYTALIQGVWFKGTNSTHSMK*EVETKF
Trigger: GAACTTAGTTTCTACCTCCCACTTCATAGAGTGTGT...AGAGTTTGTGCCCTTAAACCAGACTCCCTGGATTAATGCTGTGTACCCGTGGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR CCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTATGTCTTCTTCTGAAGTaGCTCTCCAGAAGGCTGTCA +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLCLLLK*LSRRLS
Trigger: TGACAGCCTTCTGGAGAGCCACTTCAGAAGAAGACA...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR TCA 90 bp ACTGAGCTACAGTACAACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCAGCCATGTCTTCTTCTaGAGTGGCTCTCCAGAAGGC +
Preference number: 4 (lower is better)
Translates to: TELQYNSHLVQWLSKTSSSHVFF*SGSPEG
Trigger: GCCTTCTGGAGAGCCACTTCAGAAGAAGACATGGCT...GCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTTGTACTGTAGCTCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR TCA 90 bp CAGAGTTGCAATGATTGCCAAAGCAGGTACATGGTAAGACTTAGCAAGAAGAAAAGCCATGTCTTCTTCTaGAGTGGCTCTCCAGAAGGC +
Preference number: 4 (lower is better)
Translates to: QSCNDCQSRYMVRLSKKKSHVFF*SGSPEG
Trigger: GCCTTCTGGAGAGCCACTTCAGAAGAAGACATGGCT...TTTCTTCTTGCTAAGTCTTACCATGTACCTGCTTTGGCAATCATTGCAACTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR TCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTAGACATTTCTACAGACTaGATCCCAGGGACTAAATCC +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLDISTD*IPGTKS
Trigger: GGATTTAGTCCCTGGGATTCAGTCTGTAGAAATGTC...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR GCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTAATAGTCCATATGTGCTaGGATCCCCATTCCAGTTTC +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLIVHMC*DPHSSF
Trigger: GAAACTGGAATGGGGATCGCAGCACATATGGACTAT...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR GCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTAGGAGCATTTTCTCTCTaGTGGAGTCAGAAAAAGGCA +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLGAFSL*WSQKKA
Trigger: TGCCTTTTTCTGACTCCAGCAGAGAGAAAATGCTCC...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR GCA 90 bp TATGATCCAGGGGAACGTTTCCCCACACCACTGAGCTACTTTACCAGCGATCATTTCCTTATAGCCTATTaGAGGCAAACAGCAACAACT +
Preference number: 4 (lower is better)
Translates to: YDPGERFPTPLSYFTSDHFLIAY*RQTATT
Trigger: AGTTGTTGCTGTTTGCCTGCAATAGGCTATAAGGAA...ATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAACGTTCCCCTGGATCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CCA 90 bp CCAAATCTTGTCATAGGTGAGCATAAGATGGTATCTGCTTCATCCAGCTTTTATAGCTGGAGATGGCGGTaGGCAAAGAGTCGACATCAC +
Preference number: 4 (lower is better)
Translates to: PNLVIGEHKMVSASSSFYSWRWR*AKSRHH
Trigger: GTGATGTCGACTCTTTGCCCACCGCCATCTCCAGCT...ATAAAAGCTGGATGAAGCAGATACCATCTTATGCTCACCTATGACAAGATTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR CCA 90 bp CATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTGATTCAAGCTGGAGATGGCGGTaGGCAAAGAGTCGACATCAC +
Preference number: 4 (lower is better)
Translates to: HLVQWLSKTSSCPHLSDSSWRWR*AKSRHH
Trigger: GTGATGTCGACTCTTTGCCCACCGCCATCTCCAGCT...TGAATCAGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR CCA 90 bp AAGCAACTAGTAAAGGAACTAACATGTAGGCACTCAACAAATACTGGCTATTTCGGCAACAGCTGGAGATaGCGGTGGGCAAAGAGTCGA +
Preference number: 4 (lower is better)
Translates to: KQLVKELTCRHSTNTGYFGNSWR*RWAKSR
Trigger: TCGACTCTTTGCCCACCGCCATCTCCAGCTGTTGCC...GAAATAGCCAGTATTTGTTGAGTGCCTACATGTTAGTTCCTTTACTAGTTGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR CCA 90 bp CATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTGATTCATGTCTTGGCAACAGCTaGAGATGGCGGTGGGCAAAG +
Preference number: 4 (lower is better)
Translates to: HLVQWLSKTSSCPHLSDSCLGNS*RWRWAK
Trigger: CTTTGCCCACCGCCATCTCCAGCTGTTGCCAAGACA...TGAATCAGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR CCA 90 bp GCAAACAGCAACAACTTCAAAAACATAGGCAGAAATGCAAGAAGGAAGTACTCATGTCTTGGCAACAGCTaGAGATGGCGGTGGGCAAAG +
Preference number: 4 (lower is better)
Translates to: ANSNNFKNIGRNARRKYSCLGNS*RWRWAK
Trigger: CTTTGCCCACCGCCATCTCCAGCTGTTGCCAAGACA...TGAGTACTTCCTTCTTGCATTTCTGCCTATGTTTTTGAAGTTGTTGCTGTTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTATACCTGTTCTGTCTTTaGAGCCCAAATGTGCCTTAC +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLYLFCL*SPNVPY
Trigger: GTAAGGCACATTTGGGCTCCAAAGACAGAACAGGTA...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR CCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTACCACATCTATGTGTGTaGTGGGATATGGAGCATACA +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLPHLCV*WDMEHT
Trigger: TGTATGCTCCATATCCCACCACACACATAGATGTGG...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR CCA 90 bp CTGATTCAAGCCATTAAGGCTCTTAGGTTAAACACACTCATGCCTCTGATACTCGCGTCATCTTTTACGTaGGCGGAACTTGTCGCTGTT +
Preference number: 4 (lower is better)
Translates to: LIQAIKALRLNTLMPLILASSFT*AELVAV
Trigger: AACAGCGACAAGTTCCGCCCACGTAAAAGATGACGC...GAGTATCAGAGGCATGAGTGTGTTTAACCTAAGAGCCTTAATGGCTTGAATCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR CCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTATGGCATTGTCAGAAGTaGCAAATGGATTCTCTCCTC +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLWHCQK*QMDSLL
Trigger: GAGGAGAGAATCCATTTGCCACTTCTGACAATGCCA...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR TCA 90 bp ACTGAGCTACAGTACAACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCGATATGGAGCATACATaGCTTGCCGGAAAGGCAGCA +
Preference number: 4 (lower is better)
Translates to: TELQYNSHLVQWLSKTSSDMEHT*LAGKAA
Trigger: TGCTGCCTTTCCGGCAAGTCATGTATGCTCCATATC...GCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTTGTACTGTAGCTCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR TCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTACAAGGAAAGTACTTCTaGGAGATAAGCCAGGTTTCA +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLQGKYF*EISQVS
Trigger: TGAAACCTGGCTTATCTCTCAGAAGTACTTTCCTTG...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR TCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTAGTCAAGGCTTTTCTGTaGAGGACAAGTAGAAACTGT +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLVKAFL*RTSRNC
Trigger: ACAGTTTCTACTTGTCCTTCACAGAAAAGCCTTGAC...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR TCA 90 bp TATGATCCAGGGGAACGTTTCCCCACACCACTGAGCTACTTTACCAGCGATCATGCTCTAGTTTTCAGTTaGTTGCAGAAGTATTACAGT +
Preference number: 4 (lower is better)
Translates to: YDPGERFPTPLSYFTSDHALVFS*LQKYYS
Trigger: ACTGTAATACTTCTGCAATCAACTGAAAACTAGAGC...ATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAACGTTCCCCTGGATCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR TCA 90 bp TATGATCCAGGGGAACGTTTCCCCACACCACTGAGCTACTTTACCAGCGATCATCAAGATGAAAATGACTaGCCAGTGAAATCTGAACTT +
Preference number: 4 (lower is better)
Translates to: YDPGERFPTPLSYFTSDHQDEND*PVKSEL
Trigger: AAGTTCAGATTTCACTGGTCAGTCATTTTCATCTTG...ATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAACGTTCCCCTGGATCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR TCA 90 bp TTTCTTCCAAATCTTGTCATAGGTGAGCATAAGATGGTATCTGCTTCATCCAGCTCAAGCAAGGGGCCATaGTTTCTTGTCTGGGATGGA +
Preference number: 4 (lower is better)
Translates to: FLPNLVIGEHKMVSASSSSSKGP*FLVWDG
Trigger: TCCATCCCAGACAAGAAATCATGGCCCCTTGCTTGA...GCTGGATGAAGCAGATACCATCTTATGCTCACCTATGACAAGATTTGGAAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR TCA 90 bp CTGATTCAAGCCATTAAGGCTCTTAGGTTAAACACACTCATGCCTCTGATACTCACACACTCATGCCTCTaGTACTCCATCATGAGCCTA +
Preference number: 4 (lower is better)
Translates to: LIQAIKALRLNTLMPLILTHSCL*YSIMSL
Trigger: TAGGCTCATGATGGAGTATCAGAGGCATGAGTGTGT...GAGTATCAGAGGCATGAGTGTGTTTAACCTAAGAGCCTTAATGGCTTGAATCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR TCA 90 bp GCCATTAAGGCTCTTAGGTTAAACACACTCATGCCTCTGATACTCCATCATGAGGGACTAAAGTGCTTCTaGTTCAAGCCATTAAGGCTC +
Preference number: 4 (lower is better)
Translates to: AIKALRLNTLMPLILHHEGLKCF*FKPLRL
Trigger: GAGCCTTAATGGCTTGAATCAGAAGCACTTTAGTCC...CTCATGATGGAGTATCAGAGGCATGAGTGTGTTTAACCTAAGAGCCTTAATGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR GCA 90 bp GTTCCAAGACAGCTCTGTATTTTAAAGCTCAGCATGGGCCAAATTCAACCTCTGGTCACATTATCCAAATaGTCCGGAGATATCCACTCG +
Preference number: 4 (lower is better)
Translates to: VPRQLCILKLSMGQIQPLVTLSK*SGDIHS
Trigger: CGAGTGGATATCTCCGGAGCATTTGGATAATGTGAC...CAGAGGTTGAATTTGGCCCATGCTGAGCTTTAAAATACAGAGCTGTCTTGGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR GCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTATATAGCACCACTCTCTaGATTTCGAAGGATTTCTCC +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLYSTTL*ISKDFS
Trigger: GGAGAAATCCTTCGAAATGCAGAGAGTGGTGCTATA...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR GCA 90 bp ACTGAGCTACAGTACAACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCGAACAGCCACAGGTTTaGAAGTGTGAGCTGATGGCA +
Preference number: 4 (lower is better)
Translates to: TELQYNSHLVQWLSKTSSEQPQV*KCELMA
Trigger: TGCCATCAGCTCACACTTGCAAACCTGTGGCTGTTC...GCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTTGTACTGTAGCTCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR GCA 90 bp CAGAGTTGCAATGATTGCCAAAGCAGGTACATGGTAAGACTTAGCAAGAAGAAAGAACAGCCACAGGTTTaGAAGTGTGAGCTGATGGCA +
Preference number: 4 (lower is better)
Translates to: QSCNDCQSRYMVRLSKKKEQPQV*KCELMA
Trigger: TGCCATCAGCTCACACTTGCAAACCTGTGGCTGTTC...TTTCTTCTTGCTAAGTCTTACCATGTACCTGCTTTGGCAATCATTGCAACTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR GCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTATTACTTTCTCTGCACTaGTACCTACTACAACGGAAC +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLLLSLH*YLLQRN
Trigger: GTTCCGTTGTAGTAGGTAGCAGTGCAGAGAAAGTAA...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR GCA 90 bp CAGAGTTGCAATGATTGCCAAAGCAGGTACATGGTAAGACTTAGCAAGAAGAAAGGAGCATACATGACTTaGCGGAAAGGCAGCACAAAG +
Preference number: 4 (lower is better)
Translates to: QSCNDCQSRYMVRLSKKKGAYMT*RKGSTK
Trigger: CTTTGTGCTGCCTTTCCGGCAAGTCATGTATGCTCC...TTTCTTCTTGCTAAGTCTTACCATGTACCTGCTTTGGCAATCATTGCAACTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CCA 90 bp AAGCAACTAGTAAAGGAACTAACATGTAGGCACTCAACAAATACTGGCTATTTCTGTCTTGGCAACAGCTaGAGATGGCGGTGGGCAAAG +
Preference number: 4 (lower is better)
Translates to: KQLVKELTCRHSTNTGYFCLGNS*RWRWAK
Trigger: CTTTGCCCACCGCCATCTCCAGCTGTTGCCAAGACA...GAAATAGCCAGTATTTGTTGAGTGCCTACATGTTAGTTCCTTTACTAGTTGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR CCA 90 bp GCCCACGGGTACACAGCATTAATCCAGGGAGTCTGGTTTAAGGGCACAAACTCTTCTCCATTTAGAGTGTaGTTGGCAAGAAAAGTTATT +
Preference number: 4 (lower is better)
Translates to: AHGYTALIQGVWFKGTNSSPFRV*LARKVI
Trigger: AATAACTTTTCTTGCCAACCACACTCTAAATGGAGA...AGAGTTTGTGCCCTTAAACCAGACTCCCTGGATTAATGCTGTGTACCCGTGGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR CCA 90 bp ACTGAGCTACAGTACAACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTAAATTTGGTGGGTaGGGGGCAGAAGGGCTCTAT +
Preference number: 4 (lower is better)
Translates to: TELQYNSHLVQWLSKTSSCKFGG*GAEGLY
Trigger: ATAGAGCCCTTCTGCCCCCCACCCACCAAATTTACA...GCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTTGTACTGTAGCTCAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR CCA 90 bp GCCCACGGGTACACAGCATTAATCCAGGGAGTCTGGTTTAAGGGCACAAACTCTGCACTCAACAAATACTaGCTATTTCTAGAAGAAATG +
Preference number: 4 (lower is better)
Translates to: AHGYTALIQGVWFKGTNSALNKY*LFLEEM
Trigger: CATTTCTTCTAGAAATAGCCAGTATTTGTTGAGTGC...AGAGTTTGTGCCCTTAAACCAGACTCCCTGGATTAATGCTGTGTACCCGTGGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR TCA 90 bp GCCATTAAGGCTCTTAGGTTAAACACACTCATGCCTCTGATACTCCATCATGAGAGAAGAAAGCCTTCATaGCAGCTGTCACCAATATCA +
Preference number: 4 (lower is better)
Translates to: AIKALRLNTLMPLILHHERRKPS*QLSPIS
Trigger: TGATATTGGTGACAGCTGTCATGAAGGCTTTCTTCT...CTCATGATGGAGTATCAGAGGCATGAGTGTGTTTAACCTAAGAGCCTTAATGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR TCA 90 bp TTAATTTTCTCAGCCAGAGCCATTATTATGTTAAGATCGCCCTCTGCTGTTAAAGTTTCCCCACACCACTaGGCTACTTTACCAGCGATC +
Preference number: 4 (lower is better)
Translates to: LIFSARAIIMLRSPSAVKVSPHH*ATLPAI
Trigger: GATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAAC...TTTAACAGCAGAGGGCGATCTTAACATAATAATGGCTCTGGCTGAGAAAATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR TCA 90 bp GCAAACAGCAACAACTTCAAAAACATAGGCAGAAATGCAAGAAGGAAGTACTCACAGAATTCTGGAGTATaGTCCAGGGGAACGTTTCCC +
Preference number: 4 (lower is better)
Translates to: ANSNNFKNIGRNARRKYSQNSGV*SRGTFP
Trigger: GGGAAACGTTCCCCTGGATCATACTCCAGAATTCTG...TGAGTACTTCCTTCTTGCATTTCTGCCTATGTTTTTGAAGTTGTTGCTGTTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR GCA 90 bp TATGATCCAGGGGAACGTTTCCCCACACCACTGAGCTACTTTACCAGCGATCATTCTTGTCTTTCCTTATaGATCCATATTCTTCCTTTC +
Preference number: 4 (lower is better)
Translates to: YDPGERFPTPLSYFTSDHSCLSL*IHILPF
Trigger: GAAAGGAAGAATATGGATGCATAAGGAAAGACAAGA...ATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAACGTTCCCCTGGATCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR GCA 90 bp CATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTGATTCAGAACAGCCACAGGTTTaGAAGTGTGAGCTGATGGCA +
Preference number: 4 (lower is better)
Translates to: HLVQWLSKTSSCPHLSDSEQPQV*KCELMA
Trigger: TGCCATCAGCTCACACTTGCAAACCTGTGGCTGTTC...TGAATCAGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR GCA 90 bp ATTGTTCCAAGACAGCTCTGTATTTTAAAGCTCAGCATGGGCCAAATTCAACCTACGACCTCTACTGTCTaGTTTCTGTATCACTGCCTC +
Preference number: 4 (lower is better)
Translates to: IVPRQLCILKLSMGQIQPTTSTV*FLYHCL
Trigger: GAGGCAGTGATACAGAAAGCAGACAGTAGAGGTCGT...AGGTTGAATTTGGCCCATGCTGAGCTTTAAAATACAGAGCTGTCTTGGAACAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTAGCTGGAGATGGCGGTaGGCAAAGAGTCGACATCAC +
Preference number: 4 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGSWRWR*AKSRHH
Trigger: GTGATGTCGACTCTTTGCCCACCGCCATCTCCAGCT...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTTGTCTTGGCAACAGCTaGAGATGGCGGTGGGCAAAG +
Preference number: 4 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGCLGNS*RWRWAK
Trigger: CTTTGCCCACCGCCATCTCCAGCTGTTGCCAAGACA...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CCA 90 bp TATGATCCAGGGGAACGTTTCCCCACACCACTGAGCTACTTTACCAGCGATCATTCTCCATTTAGAGTGTaGTTGGCAAGAAAAGTTATT +
Preference number: 4 (lower is better)
Translates to: YDPGERFPTPLSYFTSDHSPFRV*LARKVI
Trigger: AATAACTTTTCTTGCCAACCACACTCTAAATGGAGA...ATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAACGTTCCCCTGGATCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR CCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTATTCTCCAGTAAGCATTaGAATAATACTCTGACCCTG +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLFSSKH*NNTLTL
Trigger: CAGGGTCAGAGTATTATTCCAATGCTTACTGGAGAA...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR CCA 90 bp GCAAACAGCAACAACTTCAAAAACATAGGCAGAAATGCAAGAAGGAAGTACTCAGCGTCATCTTTTACGTaGGCGGAACTTGTCGCTGTT +
Preference number: 4 (lower is better)
Translates to: ANSNNFKNIGRNARRKYSASSFT*AELVAV
Trigger: AACAGCGACAAGTTCCGCCCACGTAAAAGATGACGC...TGAGTACTTCCTTCTTGCATTTCTGCCTATGTTTTTGAAGTTGTTGCTGTTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000619707.5
CDS-3UTR CCA 90 bp GCCATTAAGGCTCTTAGGTTAAACACACTCATGCCTCTGATACTCCATCATGAGTTAATCCAGGGAGTCTaGTTTAAGGGCACAAACTCT +
Preference number: 4 (lower is better)
Translates to: AIKALRLNTLMPLILHHELIQGV*FKGTNS
Trigger: AGAGTTTGTGCCCTTAAACCAGACTCCCTGGATTAA...CTCATGATGGAGTATCAGAGGCATGAGTGTGTTTAACCTAAGAGCCTTAATGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR TCA 90 bp ACTGAGCTACAGTACAACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTTTCGTCAGTGTAGATaGTCGTATCCTGAGCCATGT +
Preference number: 4 (lower is better)
Translates to: TELQYNSHLVQWLSKTSSFRQCR*SYPEPC
Trigger: ACATGGCTCAGGATACGATCATCTACACTGACGAAA...GCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTTGTACTGTAGCTCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR TCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTGTTTCCCCACACCACTaGGCTACTTTACCAGCGATC +
Preference number: 4 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGVSPHH*ATLPAI
Trigger: GATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAAC...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR TCA 90 bp GGCCAAATTCAACCTCTGGATGAAATATGTGATTCTTGTGGCATTGTCAGAAGTTGGGGTGAGCTACCCTaGTATGACATTTTCTCTTTC +
Preference number: 4 (lower is better)
Translates to: GQIQPLDEICDSCGIVRSWGELP*YDIFSF
Trigger: GAAAGAGAAAATGTCATATCAGGGTAGCTCACCCCA...ACTTCTGACAATGCCACAAGAATCACATATTTCATCCAGAGGTTGAATTTGGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR GCA 90 bp CAGAGTTGCAATGATTGCCAAAGCAGGTACATGGTAAGACTTAGCAAGAAGAAAGTCACATTATCCAAATaGTCCGGAGATATCCACTCG +
Preference number: 4 (lower is better)
Translates to: QSCNDCQSRYMVRLSKKKVTLSK*SGDIHS
Trigger: CGAGTGGATATCTCCGGAGCATTTGGATAATGTGAC...TTTCTTCTTGCTAAGTCTTACCATGTACCTGCTTTGGCAATCATTGCAACTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000644136.1
CDS-3UTR GCA 90 bp ACTGAGCTACAGTACAACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCATAGTCCATATGTGCTaGGATCCCCATTCCAGTTTC +
Preference number: 4 (lower is better)
Translates to: TELQYNSHLVQWLSKTSSIVHMC*DPHSSF
Trigger: GAAACTGGAATGGGGATCGCAGCACATATGGACTAT...GCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTTGTACTGTAGCTCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR GCA 90 bp TGTTCCAAGACAGCTCTGTATTTTAAAGCTCAGCATGGGCCAAATTCAACCTCTTTACTTTCTCTGCACTaGTACCTACTACAACGGAAC +
Preference number: 4 (lower is better)
Translates to: CSKTALYFKAQHGPNSTSLLSLH*YLLQRN
Trigger: GTTCCGTTGTAGTAGGTAGCAGTGCAGAGAAAGTAA...AGAGGTTGAATTTGGCCCATGCTGAGCTTTAAAATACAGAGCTGTCTTGGAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR GCA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTACTTATTTACTTTCTCTaGACTGCTACCTACTACAAC +
Preference number: 4 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLLIYFL*TATYYN
Trigger: GTTGTAGTAGGTAGCAGTGCAGAGAAAGTAAATAAG...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR GCA 90 bp ACTGAGCTACAGTACAACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCGGAGCATTTTCTCTCTaGTGGAGTCAGAAAAAGGCA +
Preference number: 4 (lower is better)
Translates to: TELQYNSHLVQWLSKTSSGAFSL*WSQKKA
Trigger: TGCCTTTTTCTGACTCCAGCAGAGAGAAAATGCTCC...GCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTTGTACTGTAGCTCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR GCA 90 bp CAGAGTTGCAATGATTGCCAAAGCAGGTACATGGTAAGACTTAGCAAGAAGAAAGGAGCATTTTCTCTCTaGTGGAGTCAGAAAAAGGCA +
Preference number: 4 (lower is better)
Translates to: QSCNDCQSRYMVRLSKKKGAFSL*WSQKKA
Trigger: TGCCTTTTTCTGACTCCAGCAGAGAGAAAATGCTCC...TTTCTTCTTGCTAAGTCTTACCATGTACCTGCTTTGGCAATCATTGCAACTCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR GCA 90 bp ATTGTTCCAAGACAGCTCTGTATTTTAAAGCTCAGCATGGGCCAAATTCAACCTGGAGCATTTTCTCTCTaGTGGAGTCAGAAAAAGGCA +
Preference number: 4 (lower is better)
Translates to: IVPRQLCILKLSMGQIQPGAFSL*WSQKKA
Trigger: TGCCTTTTTCTGACTCCAGCAGAGAGAAAATGCTCC...AGGTTGAATTTGGCCCATGCTGAGCTTTAAAATACAGAGCTGTCTTGGAACAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR GCA 90 bp ATAAAAGAGTGTAGGCCTGGTTTAATTTTCTCAGCCAGAGCCATTATTATGTTATCACTGCCTCAATCATaGCCCTCCTCTTGCCTTGTC +
Preference number: 4 (lower is better)
Translates to: IKECRPGLIFSARAIIMLSLPQS*PSSCLV
Trigger: GACAAGGCAAGAGGAGGGGCATGATTGAGGCAGTGA...TAACATAATAATGGCTCTGGCTGAGAAAATTAAACCAGGCCTACACTCTTTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CCA 90 bp GAAGTGGCAAATGGATTCTCTCCTCCTAAATGTGGTGTGACTCTCCCATCAACCCATTTAGAGTGTGGTTaGCAAGAAAAGTTATTTCTC +
Preference number: 4 (lower is better)
Translates to: EVANGFSPPKCGVTLPSTHLECG*QEKLFL
Trigger: GAGAAATAACTTTTCTTGCCAACCACACTCTAAATG...GGTTGATGGGAGAGTCACACCACATTTAGGAGGAGAGAATCCATTTGCCACTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CCA 90 bp GCCTGGTTTAATTTTCTCAGCCAGAGCCATTATTATGTTAAGATCGCCCTCTGCACACACTCTATGAAGTaGGAGGTAGAAACTAAGTTC +
Preference number: 4 (lower is better)
Translates to: AWFNFLSQSHYYVKIALCTHSMK*EVETKF
Trigger: GAACTTAGTTTCTACCTCCCACTTCATAGAGTGTGT...GCAGAGGGCGATCTTAACATAATAATGGCTCTGGCTGAGAAAATTAAACCAGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CCA 90 bp GCCATTAAGGCTCTTAGGTTAAACACACTCATGCCTCTGATACTCCATCATGAGTTCTCCAGTAAGCATTaGAATAATACTCTGACCCTG +
Preference number: 4 (lower is better)
Translates to: AIKALRLNTLMPLILHHEFSSKH*NNTLTL
Trigger: CAGGGTCAGAGTATTATTCCAATGCTTACTGGAGAA...CTCATGATGGAGTATCAGAGGCATGAGTGTGTTTAACCTAAGAGCCTTAATGGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR CCA 90 bp CATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTGATTCATGTCTTCTTCTGAAGTaGCTCTCCAGAAGGCTGTCA +
Preference number: 4 (lower is better)
Translates to: HLVQWLSKTSSCPHLSDSCLLLK*LSRRLS
Trigger: TGACAGCCTTCTGGAGAGCCACTTCAGAAGAAGACA...TGAATCAGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR TCA 90 bp CAGAGTTGCAATGATTGCCAAAGCAGGTACATGGTAAGACTTAGCAAGAAGAAAAGAAGAAAGCCTTCATaGCAGCTGTCACCAATATCA +
Preference number: 4 (lower is better)
Translates to: QSCNDCQSRYMVRLSKKKRRKPS*QLSPIS
Trigger: TGATATTGGTGACAGCTGTCATGAAGGCTTTCTTCT...TTTCTTCTTGCTAAGTCTTACCATGTACCTGCTTTGGCAATCATTGCAACTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR TCA 90 bp GCAAACAGCAACAACTTCAAAAACATAGGCAGAAATGCAAGAAGGAAGTACTCATTTCGTCAGTGTAGATaGTCGTATCCTGAGCCATGT +
Preference number: 4 (lower is better)
Translates to: ANSNNFKNIGRNARRKYSFRQCR*SYPEPC
Trigger: ACATGGCTCAGGATACGATCATCTACACTGACGAAA...TGAGTACTTCCTTCTTGCATTTCTGCCTATGTTTTTGAAGTTGTTGCTGTTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR TCA 90 bp ACTGAGCTACAGTACAACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCCAAGGAAAGTACTTCTaGGAGATAAGCCAGGTTTCA +
Preference number: 4 (lower is better)
Translates to: TELQYNSHLVQWLSKTSSQGKYF*EISQVS
Trigger: TGAAACCTGGCTTATCTCTCAGAAGTACTTTCCTTG...GCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTTGTACTGTAGCTCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR TCA 90 bp GGCCAAATTCAACCTCTGGATGAAATATGTGATTCTTGTGGCATTGTCAGAAGTGTCAAGGCTTTTCTGTaGAGGACAAGTAGAAACTGT +
Preference number: 4 (lower is better)
Translates to: GQIQPLDEICDSCGIVRSVKAFL*RTSRNC
Trigger: ACAGTTTCTACTTGTCCTTCACAGAAAAGCCTTGAC...ACTTCTGACAATGCCACAAGAATCACATATTTCATCCAGAGGTTGAATTTGGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR TCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTCAGAATTCTGGAGTATaGTCCAGGGGAACGTTTCCC +
Preference number: 4 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGQNSGV*SRGTFP
Trigger: GGGAAACGTTCCCCTGGATCATACTCCAGAATTCTG...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR GCA 90 bp CAGAGTTGCAATGATTGCCAAAGCAGGTACATGGTAAGACTTAGCAAGAAGAAATTACTTTCTCTGCACTaGTACCTACTACAACGGAAC +
Preference number: 4 (lower is better)
Translates to: QSCNDCQSRYMVRLSKKKLLSLH*YLLQRN
Trigger: GTTCCGTTGTAGTAGGTAGCAGTGCAGAGAAAGTAA...TTTCTTCTTGCTAAGTCTTACCATGTACCTGCTTTGGCAATCATTGCAACTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR GCA 90 bp GTTCCAAGACAGCTCTGTATTTTAAAGCTCAGCATGGGCCAAATTCAACCTCTGCTTATTTACTTTCTCTaGACTGCTACCTACTACAAC +
Preference number: 4 (lower is better)
Translates to: VPRQLCILKLSMGQIQPLLIYFL*TATYYN
Trigger: GTTGTAGTAGGTAGCAGTGCAGAGAAAGTAAATAAG...CAGAGGTTGAATTTGGCCCATGCTGAGCTTTAAAATACAGAGCTGTCTTGGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR GCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTGGAGCATACATGACTTaGCGGAAAGGCAGCACAAAG +
Preference number: 4 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGGAYMT*RKGSTK
Trigger: CTTTGTGCTGCCTTTCCGGCAAGTCATGTATGCTCC...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR GCA 90 bp TTTCTTCCAAATCTTGTCATAGGTGAGCATAAGATGGTATCTGCTTCATCCAGCGTCACATTATCCAAATaGTCCGGAGATATCAAGCGT +
Preference number: 4 (lower is better)
Translates to: FLPNLVIGEHKMVSASSSVTLSK*SGDIKR
Trigger: ACGCTTGATATCTCCGGAGCATTTGGATAATGTGAC...GCTGGATGAAGCAGATACCATCTTATGCTCACCTATGACAAGATTTGGAAGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR CCA 90 bp CCAAATCTTGTCATAGGTGAGCATAAGATGGTATCTGCTTCATCCAGCTTTTATTACCTGTTCTGTCTTTaGAGCCCAAATGTGCCTTAC +
Preference number: 4 (lower is better)
Translates to: PNLVIGEHKMVSASSSFYYLFCL*SPNVPY
Trigger: GTAAGGCACATTTGGGCTCCAAAGACAGAACAGGTA...ATAAAAGCTGGATGAAGCAGATACCATCTTATGCTCACCTATGACAAGATTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR CCA 90 bp TACTCTTTTCCTGAGTCCAGGACACATGGGGTGAGCTACCCTGATATGACATTTTCTCCATTTAGAGTGTaGTTGGCAAGAAAAGTTATT +
Preference number: 4 (lower is better)
Translates to: YSFPESRTHGVSYPDMTFSPFRV*LARKVI
Trigger: AATAACTTTTCTTGCCAACCACACTCTAAATGGAGA...AAATGTCATATCAGGGTAGCTCACCCCATGTGTCCTGGACTCAGGAAAAGAGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTGTGTGTGGTGGGATATaGAGCATACATGACTTGCCG +
Preference number: 4 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGVCGGI*SIHDLP
Trigger: CGGCAAGTCATGTATGCTCCATATCCCACCACACAC...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CCA 90 bp ATAAAAGAGTGTAGGCCTGGTTTAATTTTCTCAGCCAGAGCCATTATTATGTTAGTGTGTGGTGGGATATaGAGCATACATGACTTGCCG +
Preference number: 4 (lower is better)
Translates to: IKECRPGLIFSARAIIMLVCGGI*SIHDLP
Trigger: CGGCAAGTCATGTATGCTCCATATCCCACCACACAC...TAACATAATAATGGCTCTGGCTGAGAAAATTAAACCAGGCCTACACTCTTTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CCA 90 bp CAGAGTTGCAATGATTGCCAAAGCAGGTACATGGTAAGACTTAGCAAGAAGAAAATGTTCATGACAGGGTaGCATCTGCTTCACAGTATT +
Preference number: 4 (lower is better)
Translates to: QSCNDCQSRYMVRLSKKKMFMTG*HLLHSI
Trigger: AATACTGTGAAGCAGATGCCACCCTGTCATGAACAT...TTTCTTCTTGCTAAGTCTTACCATGTACCTGCTTTGGCAATCATTGCAACTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CCA 90 bp ATTTTAAAGCTCAGCATGGGCCAAATTCAACCTCTGGATGAAATATGTGATTCTTGTCTTCTTCTGAAGTaGCTCTCCAGAAGGCTGTCA +
Preference number: 4 (lower is better)
Translates to: ILKLSMGQIQPLDEICDSCLLLK*LSRRLS
Trigger: TGACAGCCTTCTGGAGAGCCACTTCAGAAGAAGACA...AGAATCACATATTTCATCCAGAGGTTGAATTTGGCCCATGCTGAGCTTTAAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR TCA 90 bp GCAAACAGCAACAACTTCAAAAACATAGGCAGAAATGCAAGAAGGAAGTACTCAAGAAGAAAGCCTTCATaGCAGCTGTCACCAATATCA +
Preference number: 4 (lower is better)
Translates to: ANSNNFKNIGRNARRKYSRRKPS*QLSPIS
Trigger: TGATATTGGTGACAGCTGTCATGAAGGCTTTCTTCT...TGAGTACTTCCTTCTTGCATTTCTGCCTATGTTTTTGAAGTTGTTGCTGTTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR TCA 90 bp AACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTTCTGCTTCACAGTATTaGCATCCACATCTATGTGTG +
Preference number: 4 (lower is better)
Translates to: NSHLVQWLSKTSSCPHLSSASQY*HPHLCV
Trigger: CACACATAGATGTGGATGTCAATACTGTGAAGCAGA...AGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR TCA 90 bp ATTTTAAAGCTCAGCATGGGCCAAATTCAACCTCTGGATGAAATATGTGATTCTTTTCGTCAGTGTAGATaGTCGTATCCTGAGCCATGT +
Preference number: 4 (lower is better)
Translates to: ILKLSMGQIQPLDEICDSFRQCR*SYPEPC
Trigger: ACATGGCTCAGGATACGATCATCTACACTGACGAAA...AGAATCACATATTTCATCCAGAGGTTGAATTTGGCCCATGCTGAGCTTTAAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR TCA 90 bp GCAAACAGCAACAACTTCAAAAACATAGGCAGAAATGCAAGAAGGAAGTACTCACAAGGAAAGTACTTCTaGGAGATAAGCCAGGTTTCA +
Preference number: 4 (lower is better)
Translates to: ANSNNFKNIGRNARRKYSQGKYF*EISQVS
Trigger: TGAAACCTGGCTTATCTCTCAGAAGTACTTTCCTTG...TGAGTACTTCCTTCTTGCATTTCTGCCTATGTTTTTGAAGTTGTTGCTGTTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR TCA 90 bp CATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTGATTCAGTCAAGGCTTTTCTGTaGAGGACAAGTAGAAACTGT +
Preference number: 4 (lower is better)
Translates to: HLVQWLSKTSSCPHLSDSVKAFL*RTSRNC
Trigger: ACAGTTTCTACTTGTCCTTCACAGAAAAGCCTTGAC...TGAATCAGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR GCA 90 bp CATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTGATTCATATAGCACCACTCTCTaGATTTCGAAGGATTTCTCC +
Preference number: 4 (lower is better)
Translates to: HLVQWLSKTSSCPHLSDSYSTTL*ISKDFS
Trigger: GGAGAAATCCTTCGAAATGCAGAGAGTGGTGCTATA...TGAATCAGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR GCA 90 bp AAGCAACTAGTAAAGGAACTAACATGTAGGCACTCAACAAATACTGGCTATTTCATAGTCCATATGTGCTaGGATCCCCATTCCAGTTTC +
Preference number: 4 (lower is better)
Translates to: KQLVKELTCRHSTNTGYFIVHMC*DPHSSF
Trigger: GAAACTGGAATGGGGATCGCAGCACATATGGACTAT...GAAATAGCCAGTATTTGTTGAGTGCCTACATGTTAGTTCCTTTACTAGTTGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR GCA 90 bp AACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTCAGAGTTGCAATGATTaGCAAAGCAGGTACATGGTA +
Preference number: 4 (lower is better)
Translates to: NSHLVQWLSKTSSCPHLSQSCND*QSRYMV
Trigger: TACCATGTACCTGCTTTGGCAATCATTGCAACTCTG...AGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR CCA 90 bp ACTGAGCTACAGTACAACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCACACACTCTATGAAGTaGGAGGTAGAAACTAAGTTC +
Preference number: 4 (lower is better)
Translates to: TELQYNSHLVQWLSKTSSTHSMK*EVETKF
Trigger: GAACTTAGTTTCTACCTCCCACTTCATAGAGTGTGT...GCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTTGTACTGTAGCTCAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR CCA 90 bp CAGAGTTGCAATGATTGCCAAAGCAGGTACATGGTAAGACTTAGCAAGAAGAAAACACACTCTATGAAGTaGGAGGTAGAAACTAAGTTC +
Preference number: 4 (lower is better)
Translates to: QSCNDCQSRYMVRLSKKKTHSMK*EVETKF
Trigger: GAACTTAGTTTCTACCTCCCACTTCATAGAGTGTGT...TTTCTTCTTGCTAAGTCTTACCATGTACCTGCTTTGGCAATCATTGCAACTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CCA 90 bp TTAATTTTCTCAGCCAGAGCCATTATTATGTTAAGATCGCCCTCTGCTGTTAAACCACATCTATGTGTGTaGTGGGATATGGAGCATACA +
Preference number: 4 (lower is better)
Translates to: LIFSARAIIMLRSPSAVKPHLCV*WDMEHT
Trigger: TGTATGCTCCATATCCCACCACACACATAGATGTGG...TTTAACAGCAGAGGGCGATCTTAACATAATAATGGCTCTGGCTGAGAAAATTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CCA 90 bp CATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTGATTCAATGTTCATGACAGGGTaGCATCTGCTTCACAGTATT +
Preference number: 4 (lower is better)
Translates to: HLVQWLSKTSSCPHLSDSMFMTG*HLLHSI
Trigger: AATACTGTGAAGCAGATGCCACCCTGTCATGAACAT...TGAATCAGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR CCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTTGTCTTCTTCTGAAGTaGCTCTCCAGAAGGCTGTCA +
Preference number: 4 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGCLLLK*LSRRLS
Trigger: TGACAGCCTTCTGGAGAGCCACTTCAGAAGAAGACA...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
3UTR CAA 72 bp TTCAACCTCTGGATGAAATATGTGATTCTTGTGGCATaGTCAGAAGTGGCAAATGGATTCTCTCCTCCTAAA +
Preference number: 4 (lower is better)
Translates to: FNLWMKYVILVA*SEVANGFSPPK
Trigger: TTTAGGAGGAGAGAATCCATTTGCCACTTCTGACAATGCCACAAGAATCACATATTTCATCCAGAGGTTGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR TCA 90 bp ATTTTAAAGCTCAGCATGGGCCAAATTCAACCTCTGGATGAAATATGTGATTCTTCTGCTTCACAGTATTaGCATCCACATCTATGTGTG +
Preference number: 4 (lower is better)
Translates to: ILKLSMGQIQPLDEICDSSASQY*HPHLCV
Trigger: CACACATAGATGTGGATGTCAATACTGTGAAGCAGA...AGAATCACATATTTCATCCAGAGGTTGAATTTGGCCCATGCTGAGCTTTAAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR GCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTGTCACATTATCCAAATaGTCCGGAGATATCCACTCG +
Preference number: 4 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGVTLSK*SGDIHS
Trigger: CGAGTGGATATCTCCGGAGCATTTGGATAATGTGAC...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000644136.1
CDS-3UTR GCA 90 bp CCAAATCTTGTCATAGGTGAGCATAAGATGGTATCTGCTTCATCCAGCTTTTATAAGAGTCGACATCACTaGATTCCAACTGTCACATTA +
Preference number: 4 (lower is better)
Translates to: PNLVIGEHKMVSASSSFYKSRHH*IPTVTL
Trigger: TAATGTGACAGTTGGAATGCAGTGATGTCGACTCTT...ATAAAAGCTGGATGAAGCAGATACCATCTTATGCTCACCTATGACAAGATTTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR GCA 90 bp AAGCAACTAGTAAAGGAACTAACATGTAGGCACTCAACAAATACTGGCTATTTCTATAGCACCACTCTCTaGATTTCGAAGGATTTCTCC +
Preference number: 4 (lower is better)
Translates to: KQLVKELTCRHSTNTGYFYSTTL*ISKDFS
Trigger: GGAGAAATCCTTCGAAATGCAGAGAGTGGTGCTATA...GAAATAGCCAGTATTTGTTGAGTGCCTACATGTTAGTTCCTTTACTAGTTGCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR GCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTATAGTCCATATGTGCTaGGATCCCCATTCCAGTTTC +
Preference number: 4 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGIVHMC*DPHSSF
Trigger: GAAACTGGAATGGGGATCGCAGCACATATGGACTAT...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR GCA 90 bp ACTGAGCTACAGTACAACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCCTTATTTACTTTCTCTaGACTGCTACCTACTACAAC +
Preference number: 4 (lower is better)
Translates to: TELQYNSHLVQWLSKTSSLIYFL*TATYYN
Trigger: GTTGTAGTAGGTAGCAGTGCAGAGAAAGTAAATAAG...GCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTTGTACTGTAGCTCAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR GCA 90 bp AACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTTTCCTTATAGCCTATTaGAGGCAAACAGCAACAACT +
Preference number: 4 (lower is better)
Translates to: NSHLVQWLSKTSSCPHLSFLIAY*RQTATT
Trigger: AGTTGTTGCTGTTTGCCTGCAATAGGCTATAAGGAA...AGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR CCA 90 bp CATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTGATTCAACACACTCTATGAAGTaGGAGGTAGAAACTAAGTTC +
Preference number: 4 (lower is better)
Translates to: HLVQWLSKTSSCPHLSDSTHSMK*EVETKF
Trigger: GAACTTAGTTTCTACCTCCCACTTCATAGAGTGTGT...TGAATCAGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR CCA 90 bp GCAAACAGCAACAACTTCAAAAACATAGGCAGAAATGCAAGAAGGAAGTACTCATTCTCCAGTAAGCATTaGAATAATACTCTGACCCTG +
Preference number: 4 (lower is better)
Translates to: ANSNNFKNIGRNARRKYSFSSKH*NNTLTL
Trigger: CAGGGTCAGAGTATTATTCCAATGCTTACTGGAGAA...TGAGTACTTCCTTCTTGCATTTCTGCCTATGTTTTTGAAGTTGTTGCTGTTTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CCA 90 bp AACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTTTCTCCAGTAAGCATTaGAATAATACTCTGACCCTG +
Preference number: 4 (lower is better)
Translates to: NSHLVQWLSKTSSCPHLSFSSKH*NNTLTL
Trigger: CAGGGTCAGAGTATTATTCCAATGCTTACTGGAGAA...AGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR TCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTTCTGCTTCACAGTATTaGCATCCACATCTATGTGTG +
Preference number: 4 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGSASQY*HPHLCV
Trigger: CACACATAGATGTGGATGTCAATACTGTGAAGCAGA...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR TCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTGTCAAGGCTTTTCTGTaGAGGACAAGTAGAAACTGT +
Preference number: 4 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGVKAFL*RTSRNC
Trigger: ACAGTTTCTACTTGTCCTTCACAGAAAAGCCTTGAC...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR TCA 90 bp GCAAACAGCAACAACTTCAAAAACATAGGCAGAAATGCAAGAAGGAAGTACTCACAAGATGAAAATGACTaGCCAGTGAAATCTGAACTT +
Preference number: 4 (lower is better)
Translates to: ANSNNFKNIGRNARRKYSQDEND*PVKSEL
Trigger: AAGTTCAGATTTCACTGGTCAGTCATTTTCATCTTG...TGAGTACTTCCTTCTTGCATTTCTGCCTATGTTTTTGAAGTTGTTGCTGTTTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR TCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTATCTCAGAGTTGCAATaGTTGCCAAAGCAGGTACAT +
Preference number: 4 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGISELQ*LPKQVH
Trigger: ATGTACCTGCTTTGGCAATCATTGCAACTCTGAGAT...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR TCA 90 bp CATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTGATTCAATGGGAAAGCTATTATaGCCTTTCACATTCGAACAT +
Preference number: 4 (lower is better)
Translates to: HLVQWLSKTSSCPHLSDSMGKLL*PFTFEH
Trigger: ATGTTCGAATGTGAAAGGTCATAATAGCTTTCCCAT...TGAATCAGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR TCA 90 bp AACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTCATCTTTCTGATTCATaGTGGGAAAGCTATTATGAC +
Preference number: 4 (lower is better)
Translates to: NSHLVQWLSKTSSCPHLSHLSDS*WESYYD
Trigger: GTCATAATAGCTTTCCCATCATGAATCAGAAAGATG...AGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR TCA 90 bp GCAAACAGCAACAACTTCAAAAACATAGGCAGAAATGCAAGAAGGAAGTACTCACATCTTTCTGATTCATaGTGGGAAAGCTATTATGAC +
Preference number: 4 (lower is better)
Translates to: ANSNNFKNIGRNARRKYSHLSDS*WESYYD
Trigger: GTCATAATAGCTTTCCCATCATGAATCAGAAAGATG...TGAGTACTTCCTTCTTGCATTTCTGCCTATGTTTTTGAAGTTGTTGCTGTTTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR GCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTTATAGCACCACTCTCTaGATTTCGAAGGATTTCTCC +
Preference number: 4 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGYSTTL*ISKDFS
Trigger: GGAGAAATCCTTCGAAATGCAGAGAGTGGTGCTATA...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR GCA 90 bp TTTCTTCCAAATCTTGTCATAGGTGAGCATAAGATGGTATCTGCTTCATCCAGCTCTTGTCTTTCCTTATaGATCCATATTCTTCCTTTC +
Preference number: 4 (lower is better)
Translates to: FLPNLVIGEHKMVSASSSSCLSL*IHILPF
Trigger: GAAAGGAAGAATATGGATGCATAAGGAAAGACAAGA...GCTGGATGAAGCAGATACCATCTTATGCTCACCTATGACAAGATTTGGAAGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR CCA 90 bp TTTCTTCCAAATCTTGTCATAGGTGAGCATAAGATGGTATCTGCTTCATCCAGCCATTTAGAGTGTGGTTaGCAAGAAAAGTTATTTCTC +
Preference number: 4 (lower is better)
Translates to: FLPNLVIGEHKMVSASSSHLECG*QEKLFL
Trigger: GAGAAATAACTTTTCTTGCCAACCACACTCTAAATG...GCTGGATGAAGCAGATACCATCTTATGCTCACCTATGACAAGATTTGGAAGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR CCA 90 bp ACTGAGCTACAGTACAACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCCATTTAGAGTGTGGTTaGCAAGAAAAGTTATTTCTC +
Preference number: 4 (lower is better)
Translates to: TELQYNSHLVQWLSKTSSHLECG*QEKLFL
Trigger: GAGAAATAACTTTTCTTGCCAACCACACTCTAAATG...GCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTTGTACTGTAGCTCAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR CCA 90 bp TTAATTTTCTCAGCCAGAGCCATTATTATGTTAAGATCGCCCTCTGCTGTTAAATTCTCCAGTAAGCATTaGAATAATACTCTGACCCTG +
Preference number: 4 (lower is better)
Translates to: LIFSARAIIMLRSPSAVKFSSKH*NNTLTL
Trigger: CAGGGTCAGAGTATTATTCCAATGCTTACTGGAGAA...TTTAACAGCAGAGGGCGATCTTAACATAATAATGGCTCTGGCTGAGAAAATTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CCA 90 bp AACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTAGTCATCTAGTTCAGTaGTTGTCTAAAACATCAAGC +
Preference number: 4 (lower is better)
Translates to: NSHLVQWLSKTSSCPHLSSHLVQ*LSKTSS
Trigger: GCTTGATGTTTTAGACAACCACTGAACTAGATGACT...AGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR GCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTAAGAGTCGACATCACTaGATTCCAACTGTCACATTA +
Preference number: 4 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGKSRHH*IPTVTL
Trigger: TAATGTGACAGTTGGAATGCAGTGATGTCGACTCTT...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR GCA 90 bp GCAAACAGCAACAACTTCAAAAACATAGGCAGAAATGCAAGAAGGAAGTACTCATCTTGTCTTTCCTTATaGATCCATATTCTTCCTTTC +
Preference number: 4 (lower is better)
Translates to: ANSNNFKNIGRNARRKYSSCLSL*IHILPF
Trigger: GAAAGGAAGAATATGGATGCATAAGGAAAGACAAGA...TGAGTACTTCCTTCTTGCATTTCTGCCTATGTTTTTGAAGTTGTTGCTGTTTGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CCA 90 bp GCAAACAGCAACAACTTCAAAAACATAGGCAGAAATGCAAGAAGGAAGTACTCACATTTAGAGTGTGGTTaGCAAGAAAAGTTATTTCTC +
Preference number: 4 (lower is better)
Translates to: ANSNNFKNIGRNARRKYSHLECG*QEKLFL
Trigger: GAGAAATAACTTTTCTTGCCAACCACACTCTAAATG...TGAGTACTTCCTTCTTGCATTTCTGCCTATGTTTTTGAAGTTGTTGCTGTTTGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CCA 90 bp GCAAACAGCAACAACTTCAAAAACATAGGCAGAAATGCAAGAAGGAAGTACTCATCTCCATTTAGAGTGTaGTTGGCAAGAAAAGTTATT +
Preference number: 4 (lower is better)
Translates to: ANSNNFKNIGRNARRKYSSPFRV*LARKVI
Trigger: AATAACTTTTCTTGCCAACCACACTCTAAATGGAGA...TGAGTACTTCCTTCTTGCATTTCTGCCTATGTTTTTGAAGTTGTTGCTGTTTGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CCA 90 bp AAGCAACTAGTAAAGGAACTAACATGTAGGCACTCAACAAATACTGGCTATTTCACTAAACTCCACTGCTaGATGGAAAAAGATCAGTAT +
Preference number: 4 (lower is better)
Translates to: KQLVKELTCRHSTNTGYFTKLHC*MEKDQY
Trigger: ATACTGATCTTTTTCCATCCAGCAGTGGAGTTTAGT...GAAATAGCCAGTATTTGTTGAGTGCCTACATGTTAGTTCCTTTACTAGTTGCTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR TCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTATGGGAAAGCTATTATaGCCTTTCACATTCGAACAT +
Preference number: 4 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGMGKLL*PFTFEH
Trigger: ATGTTCGAATGTGAAAGGTCATAATAGCTTTCCCAT...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR GCA 90 bp ATTTTAAAGCTCAGCATGGGCCAAATTCAACCTCTGGATGAAATATGTGATTCTTCTTGTCTTTCCTTATaGATCCATATTCTTCCTTTC +
Preference number: 4 (lower is better)
Translates to: ILKLSMGQIQPLDEICDSSCLSL*IHILPF
Trigger: GAAAGGAAGAATATGGATGCATAAGGAAAGACAAGA...AGAATCACATATTTCATCCAGAGGTTGAATTTGGCCCATGCTGAGCTTTAAAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR GCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTCTTATTTACTTTCTCTaGACTGCTACCTACTACAAC +
Preference number: 4 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGLIYFL*TATYYN
Trigger: GTTGTAGTAGGTAGCAGTGCAGAGAAAGTAAATAAG...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR GCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTTCTTGTCTTTCCTTATaGATCCATATTCTTCCTTTC +
Preference number: 4 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGSCLSL*IHILPF
Trigger: GAAAGGAAGAATATGGATGCATAAGGAAAGACAAGA...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CCA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTCATTTAGAGTGTGGTTaGCAAGAAAAGTTATTTCTC +
Preference number: 4 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGHLECG*QEKLFL
Trigger: GAGAAATAACTTTTCTTGCCAACCACACTCTAAATG...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CAA 90 bp CATGTGGTTCCAGCAAGCTCCACTTCAAGGGGCCCACCCTCCAGGGCATGTTCCTCCTCTTGCCTTGTCTaGGTGAAGAGTGCCTGGCCA +
Preference number: 5 (lower is better)
Translates to: HVVPASSTSRGPPSRACSSSCLV*VKSAWP
Trigger: TGGCCAGGCACTCTTCACCAAGACAAGGCAAGAGGA...GGAACATGCCCTGGAGGGTGGGCCCCTTGAAGTGGAGCTTGCTGGAACCACATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CAA 90 bp GCAAGCTCCACTTCAAGGGGCCCACCCTCCAGGGCATGTTCCAAGCATCACCAACAAGTAACGGCACACTaGCCACGACCTCTACTGTCT +
Preference number: 5 (lower is better)
Translates to: ASSTSRGPPSRACSKHHQQVTAH*PRPLLS
Trigger: AGACAGTAGAGGTCGTGGCAAGTGTGCCGTTACTTG...TTGGTGATGCTTGGAACATGCCCTGGAGGGTGGGCCCCTTGAAGTGGAGCTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CAA 90 bp CATGTGGTTCCAGCAAGCTCCACTTCAAGGGGCCCACCCTCCAGGGCATGTTCCAGCACAATGAAGATCTaGAAGGGCACACAGAGAGAG +
Preference number: 5 (lower is better)
Translates to: HVVPASSTSRGPPSRACSSTMKI*KGTQRE
Trigger: CTCTCTCTGTGTGCCCTTCAAGATCTTCATTGTGCT...GGAACATGCCCTGGAGGGTGGGCCCCTTGAAGTGGAGCTTGCTGGAACCACATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS GCA 90 bp CTTGGCAACAGCTGGAGATGGCGGTGGGCAAAGAGTCGACATCACTaGATTCCAACTGTCACATTATCCAAATGCTCCGGAGATATCCAC +
Preference number: 5 (lower is better)
Translates to: LGNSWRWRWAKSRHH*IPTVTLSKCSGDIH
Trigger: GTGGATATCTCCGGAGCATTTGGATAATGTGACAGTTGGAATGCAGTGATGTCGACTCTTTGCCCACCGCCATCTCCAGCTGTTGCCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000488117.5
ENST00000644136.1
ENST00000673600.1
CDS GCA 90 bp CTTGGCAACAGCTGGAGATGGCGGTGGGCAAAGAGTCGACATCACTaGATTCCAACTGTCACATTATCCAAATGCTCCGGAGATATCTGC +
Preference number: 5 (lower is better)
Translates to: LGNSWRWRWAKSRHH*IPTVTLSKCSGDIC
Trigger: GCAGATATCTCCGGAGCATTTGGATAATGTGACAGTTGGAATGCAGTGATGTCGACTCTTTGCCCACCGCCATCTCCAGCTGTTGCCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379995.1
CDS GCA 90 bp CTTGGCAACAGCTGGAGATGGCGGTGGGCAAAGAGTCGACATCACTaGATTCCAACTGTCACATTATCCAAATGCTCCGGAGATATCTCC +
Preference number: 5 (lower is better)
Translates to: LGNSWRWRWAKSRHH*IPTVTLSKCSGDIS
Trigger: GGAGATATCTCCGGAGCATTTGGATAATGTGACAGTTGGAATGCAGTGATGTCGACTCTTTGCCCACCGCCATCTCCAGCTGTTGCCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000619707.5
CDS GCA 90 bp CTTGGCAACAGCTGGAGATGGCGGTGGGCAAAGAGTCGACATCACTaGATTCCAACTGTCACATTATCCAAATGCTCCGGAGATATCAAG +
Preference number: 5 (lower is better)
Translates to: LGNSWRWRWAKSRHH*IPTVTLSKCSGDIK
Trigger: CTTGATATCTCCGGAGCATTTGGATAATGTGACAGTTGGAATGCAGTGATGTCGACTCTTTGCCCACCGCCATCTCCAGCTGTTGCCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR CAA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTATTACGTGGGCGGAACTaGTCGCTGTTTGACGCACCT +
Preference number: 5 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLLRGRN*SLFDAP
Trigger: AGGTGCGTCAAACAGCGACAAGTTCCGCCCACGTAA...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000619707.5
CDS-3UTR CAA 90 bp ATTTATACATGGACCTTGAGGTCAGCAAGCAAGGATGATATAAGCCAGAGTTCTTCTGGCCCTAGCGCCTaGCTCCAGCCCATGTGGTTC +
Preference number: 5 (lower is better)
Translates to: IYTWTLRSASKDDISQSSSGPSA*LQPMWF
Trigger: GAACCACATGGGCTGGAGCAAGGCGCTAGGGCCAGA...AGAACTCTGGCTTATATCATCCTTGCTTGCTGACCTCAAGGTCCATGTATAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CAA 90 bp CCACAGGTAGCAAGTAACGGCACACTTGCCACGACCTCTACTGTCTGCTTTCTGGTGATTCTTGTGGCATaGTCAGAAGTGGCAAATGGA +
Preference number: 5 (lower is better)
Translates to: PQVASNGTLATTSTVCFLVILVA*SEVANG
Trigger: TCCATTTGCCACTTCTGACAATGCCACAAGAATCAC...CAGAAAGCAGACAGTAGAGGTCGTGGCAAGTGTGCCGTTACTTGCTACCTGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS TCA 90 bp GCTTTCGTCAGTGTAGATGATCGTATCCTGAGCCATGTCTTCTTCTaGAGTGGCTCTCCAGAAGGCTGTCAGCTCGGATCTCATGTATCT +
Preference number: 5 (lower is better)
Translates to: AFVSVDDRILSHVFF*SGSPEGCQLGSHVS
Trigger: AGATACATGAGATCCGAGCTGACAGCCTTCTGGAGAGCCACTTCAGAAGAAGACATGGCTCAGGATACGATCATCTACACTGACGAAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000380003.8
ENST00000488117.5
ENST00000619707.5
ENST00000644136.1
ENST00000647196.1
ENST00000673600.1
CDS GCA 90 bp CTTGGCAACAGCTGGAGATGGCGGTGGGCAAAGAGTCGACATCACTaGATTCCAACTGTCACATTATCCAAATGCTCCGGAGATATATGT +
Preference number: 5 (lower is better)
Translates to: LGNSWRWRWAKSRHH*IPTVTLSKCSGDIC
Trigger: ACATATATCTCCGGAGCATTTGGATAATGTGACAGTTGGAATGCAGTGATGTCGACTCTTTGCCCACCGCCATCTCCAGCTGTTGCCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000647196.1
CDS GCA 90 bp ACATCCACATCTATGTGTGTGGTGGGATATGGAGCATACATGACTTaGCGGAAAGGCAGCACAAAGCTTCCAGTTGAATCCTTTAGCAGG +
Preference number: 5 (lower is better)
Translates to: TSTSMCVVGYGAYMT*RKGSTKLPVESFSR
Trigger: CCTGCTAAAGGATTCAACTGGAAGCTTTGTGCTGCCTTTCCGGCAAGTCATGTATGCTCCATATCCCACCACACACATAGATGTGGATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000380003.8
ENST00000488117.5
ENST00000619707.5
ENST00000644136.1
ENST00000647196.1
ENST00000673600.1
CDS CCA 90 bp CTGCTTCACAGTATTGACATCCACATCTATGTGTGTGGTGGGATATaGAGCATACATGACTTGCCGGAAAGGCAGCACAAAGCTTCCAGT +
Preference number: 5 (lower is better)
Translates to: LLHSIDIHIYVCGGI*SIHDLPERQHKASS
Trigger: ACTGGAAGCTTTGTGCTGCCTTTCCGGCAAGTCATGTATGCTCCATATCCCACCACACACATAGATGTGGATGTCAATACTGTGAAGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000380003.8
ENST00000488117.5
ENST00000619707.5
ENST00000644136.1
ENST00000647196.1
ENST00000673600.1
CDS-3UTR CAA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTATGGAGCATACATGACTaGCCGGAAAGGCAGCACAAA +
Preference number: 5 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLWSIHD*PERQHK
Trigger: TTTGTGCTGCCTTTCCGGCAAGTCATGTATGCTCCA...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR CAA 90 bp CCACAGGTAGCAAGTAACGGCACACTTGCCACGACCTCTACTGTCTGCTTTCTGATCTGCTTCACAGTATaGACATCCACATCTATGTGT +
Preference number: 5 (lower is better)
Translates to: PQVASNGTLATTSTVCFLICFTV*TSTSMC
Trigger: ACACATAGATGTGGATGTCAATACTGTGAAGCAGAT...CAGAAAGCAGACAGTAGAGGTCGTGGCAAGTGTGCCGTTACTTGCTACCTGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS TCA 90 bp CCAAGATTCAAATTGAGTGAGACGGTGGCTTGCTCACAGGGTTCATaGGAGGTTTCCCAATACACTTTCAAGCGTCATCTTTTACGTGGG +
Preference number: 5 (lower is better)
Translates to: PRFKLSETVACSQGS*EVSQYTFKRHLLRG
Trigger: CCCACGTAAAAGATGACGCTTGAAAGTGTATTGGGAAACCTCTCATGAACCCTGTGAGCAAGCCACCGTCTCACTCAATTTGAATCTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000647196.1
CDS TCA 90 bp TTACCAAACATTAGCCAGTCTTTTGAGGGAAGCCAAGATTCAAATTaGGTGAGACGGTGGCTTGCTCACAGGGTTCATGAGAGGTTTCCC +
Preference number: 5 (lower is better)
Translates to: LPNISQSFEGSQDSN*VRRWLAHRVHERFP
Trigger: GGGAAACCTCTCATGAACCCTGTGAGCAAGCCACCGTCTCACTCAATTTGAATCTTGGCTTCCCTCAAAAGACTGGCTAATGTTTGGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000647196.1
CDS-3UTR CAA 90 bp TACTCTTTTCCTGAGTCCAGGACACATGGGGTGAGCTACCCTGATATGACATTTGCACAAAGCTTCCAGTaGAATCCTTTAGCAGGCCTT +
Preference number: 5 (lower is better)
Translates to: YSFPESRTHGVSYPDMTFAQSFQ*NPLAGL
Trigger: AAGGCCTGCTAAAGGATTCAACTGGAAGCTTTGTGC...AAATGTCATATCAGGGTAGCTCACCCCATGTGTCCTGGACTCAGGAAAAGAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CAA 90 bp TTTCTTCCAAATCTTGTCATAGGTGAGCATAAGATGGTATCTGCTTCATCCAGCTTACGTGGGCGGAACTaGTCGCTGTTTGACGCACCT +
Preference number: 5 (lower is better)
Translates to: FLPNLVIGEHKMVSASSSLRGRN*SLFDAP
Trigger: AGGTGCGTCAAACAGCGACAAGTTCCGCCCACGTAA...GCTGGATGAAGCAGATACCATCTTATGCTCACCTATGACAAGATTTGGAAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS TCA 90 bp CAAACATTAGCCAGTCTTTTGAGGGAAGCCAAGATTCAAATTGAGTaGGACGGTGGCTTGCTCACAGGGTTCATGAGAGGTTTCCCAATA +
Preference number: 5 (lower is better)
Translates to: QTLASLLREAKIQIE*DGGLLTGFMRGFPI
Trigger: TATTGGGAAACCTCTCATGAACCCTGTGAGCAAGCCACCGTCTCACTCAATTTGAATCTTGGCTTCCCTCAAAAGACTGGCTAATGTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000647196.1
CDS-3UTR CAA 90 bp TATGATCCAGGGGAACGTTTCCCCACACCACTGAGCTACTTTACCAGCGATCATATCTGCTTCACAGTATaGACATCCACATCTATGTGT +
Preference number: 5 (lower is better)
Translates to: YDPGERFPTPLSYFTSDHICFTV*TSTSMC
Trigger: ACACATAGATGTGGATGTCAATACTGTGAAGCAGAT...ATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGGGAAACGTTCCCCTGGATCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR CAA 90 bp CTGATTCAAGCCATTAAGGCTCTTAGGTTAAACACACTCATGCCTCTGATACTCGGAACTTGTCGCTGTTaGACGCACCTCTCTTTCCTA +
Preference number: 5 (lower is better)
Translates to: LIQAIKALRLNTLMPLILGTCRC*THLSFL
Trigger: TAGGAAAGAGAGGTGCGTCAAACAGCGACAAGTTCC...GAGTATCAGAGGCATGAGTGTGTTTAACCTAAGAGCCTTAATGGCTTGAATCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR CAA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTAACCCACACCTGCTCTaGCTAGACCCCGCCCCCAAA +
Preference number: 5 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGNPHLL*LDPAPK
Trigger: TTTGGGGGCGGGGTCTAGCAAGAGCAGGTGTGGGTT...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000619707.5
CDS-3UTR CAA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTAGAATGTACTGAGCCATaGTTCCAAGACAGCTCTGTA +
Preference number: 5 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLECTEP*FQDSSV
Trigger: TACAGAGCTGTCTTGGAACAATGGCTCAGTACATTC...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS TCA 90 bp CTTTTCTGTGAAGGACAAGTAGAAACTGTGCAAGGAAAGTACTTCTaGGAGATAAGCCAGGTTTCAGCTGAAAGACCTGATCCAGGAAGG +
Preference number: 5 (lower is better)
Translates to: LFCEGQVETVQGKYF*EISQVSAERPDPGR
Trigger: CCTTCCTGGATCAGGTCTTTCAGCTGAAACCTGGCTTATCTCTCAGAAGTACTTTCCTTGCACAGTTTCTACTTGTCCTTCACAGAAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000380003.8
ENST00000488117.5
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS-3UTR CAA 90 bp CAGAGTTGCAATGATTGCCAAAGCAGGTACATGGTAAGACTTAGCAAGAAGAAATGGAGCATACATGACTaGCCGGAAAGGCAGCACAAA +
Preference number: 5 (lower is better)
Translates to: QSCNDCQSRYMVRLSKKKWSIHD*PERQHK
Trigger: TTTGTGCTGCCTTTCCGGCAAGTCATGTATGCTCCA...TTTCTTCTTGCTAAGTCTTACCATGTACCTGCTTTGGCAATCATTGCAACTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CAA 90 bp ATTGTTCCAAGACAGCTCTGTATTTTAAAGCTCAGCATGGGCCAAATTCAACCTTGGAGCATACATGACTaGCCGGAAAGGCAGCACAAA +
Preference number: 5 (lower is better)
Translates to: IVPRQLCILKLSMGQIQPWSIHD*PERQHK
Trigger: TTTGTGCTGCCTTTCCGGCAAGTCATGTATGCTCCA...AGGTTGAATTTGGCCCATGCTGAGCTTTAAAATACAGAGCTGTCTTGGAACAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CAA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTAATTCCTTATAGCCTATaGCAGGCAAACAGCAACAAC +
Preference number: 5 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLIPYSL*QANSNN
Trigger: GTTGTTGCTGTTTGCCTGCAATAGGCTATAAGGAAT...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CAA 90 bp AACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTAAAGCAATCTCTGTCTaGGCAACAGCTGGAGATGGC +
Preference number: 5 (lower is better)
Translates to: NSHLVQWLSKTSSCPHLSKAISV*ATAGDG
Trigger: GCCATCTCCAGCTGTTGCCAAGACAGAGATTGCTTT...AGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR CAA 90 bp ACTGAGCTACAGTACAACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCGCACAAAGCTTCCAGTaGAATCCTTTAGCAGGCCTT +
Preference number: 5 (lower is better)
Translates to: TELQYNSHLVQWLSKTSSAQSFQ*NPLAGL
Trigger: AAGGCCTGCTAAAGGATTCAACTGGAAGCTTTGTGC...GCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTTGTACTGTAGCTCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR CAA 90 bp CAGAGTTGCAATGATTGCCAAAGCAGGTACATGGTAAGACTTAGCAAGAAGAAAGCACAAAGCTTCCAGTaGAATCCTTTAGCAGGCCTT +
Preference number: 5 (lower is better)
Translates to: QSCNDCQSRYMVRLSKKKAQSFQ*NPLAGL
Trigger: AAGGCCTGCTAAAGGATTCAACTGGAAGCTTTGTGC...TTTCTTCTTGCTAAGTCTTACCATGTACCTGCTTTGGCAATCATTGCAACTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CAA 90 bp CCCACACCACTGAGCTACTTTACCAGCGATCATGATTGTGATGGAATAGGCTTAGGCTCTAGTTTTCAGTaGATTGCAGAAGTATTACAG +
Preference number: 5 (lower is better)
Translates to: PTPLSYFTSDHDCDGIGLGSSFQ*IAEVLQ
Trigger: CTGTAATACTTCTGCAATCAACTGAAAACTAGAGCC...TAAGCCTATTCCATCACAATCATGATCGCTGGTAAAGTAGCTCAGTGGTGTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CAA 90 bp AACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTGGAACTTGTCGCTGTTaGACGCACCTCTCTTTCCTA +
Preference number: 5 (lower is better)
Translates to: NSHLVQWLSKTSSCPHLSGTCRC*THLSFL
Trigger: TAGGAAAGAGAGGTGCGTCAAACAGCGACAAGTTCC...AGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000619707.5
CDS-3UTR CAA 90 bp AAGCAACTAGTAAAGGAACTAACATGTAGGCACTCAACAAATACTGGCTATTTCAGGGGCCATGATTTCTaGTCTGGGATGGAAACTCGG +
Preference number: 5 (lower is better)
Translates to: KQLVKELTCRHSTNTGYFRGHDF*SGMETR
Trigger: CCGAGTTTCCATCCCAGACAAGAAATCATGGCCCCT...GAAATAGCCAGTATTTGTTGAGTGCCTACATGTTAGTTCCTTTACTAGTTGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR CAA 90 bp GCCTGGTTTAATTTTCTCAGCCAGAGCCATTATTATGTTAAGATCGCCCTCTGCATTTATACATGGACCTaGAGGTCAGCAAGCAAGGAT +
Preference number: 5 (lower is better)
Translates to: AWFNFLSQSHYYVKIALCIYTWT*RSASKD
Trigger: ATCCTTGCTTGCTGACCTCAAGGTCCATGTATAAAT...GCAGAGGGCGATCTTAACATAATAATGGCTCTGGCTGAGAAAATTAAACCAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CAA 90 bp AAGCAACTAGTAAAGGAACTAACATGTAGGCACTCAACAAATACTGGCTATTTCAAAGCAATCTCTGTCTaGGCAACAGCTGGAGATGGC +
Preference number: 5 (lower is better)
Translates to: KQLVKELTCRHSTNTGYFKAISV*ATAGDG
Trigger: GCCATCTCCAGCTGTTGCCAAGACAGAGATTGCTTT...GAAATAGCCAGTATTTGTTGAGTGCCTACATGTTAGTTCCTTTACTAGTTGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR CAA 90 bp TTAATTTTCTCAGCCAGAGCCATTATTATGTTAAGATCGCCCTCTGCTGTTAAAAAAGCAATCTCTGTCTaGGCAACAGCTGGAGATGGC +
Preference number: 5 (lower is better)
Translates to: LIFSARAIIMLRSPSAVKKAISV*ATAGDG
Trigger: GCCATCTCCAGCTGTTGCCAAGACAGAGATTGCTTT...TTTAACAGCAGAGGGCGATCTTAACATAATAATGGCTCTGGCTGAGAAAATTAA
42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS-3UTR CAA 90 bp ATAAAAGAGTGTAGGCCTGGTTTAATTTTCTCAGCCAGAGCCATTATTATGTTAATCATGCCCCTCCTCTaGCCTTGTCTTGGTGAAGAG +
Preference number: 5 (lower is better)
Translates to: IKECRPGLIFSARAIIMLIMPLL*PCLGEE
Trigger: CTCTTCACCAAGACAAGGCAAGAGGAGGGGCATGAT...TAACATAATAATGGCTCTGGCTGAGAAAATTAAACCAGGCCTACACTCTTTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS CCA 90 bp ATAGCACCACTCTCTGCATTTCGAAGGATTTCTCCATTTAGAGTGTaGTTGGCAAGAAAAGTTATTTCTCCATCACTGAGAAGTACCTGT +
Preference number: 5 (lower is better)
Translates to: IAPLSAFRRISPFRV*LARKVISPSLRSTC
Trigger: ACAGGTACTTCTCAGTGATGGAGAAATAACTTTTCTTGCCAACCACACTCTAAATGGAGAAATCCTTCGAAATGCAGAGAGTGGTGCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENST00000379995.1
ENST00000379997.7
ENST00000380003.8
ENST00000488117.5
ENST00000619707.5
ENST00000644136.1
ENST00000647196.1
ENST00000673600.1
CDS CCA 90 bp GGATCTCATGTATCTACGCTGATTATAAATATGTTCATGACAGGGTaGCATCTGCTTCACAGTATTGACATCCACATCTATGTGTGTGGT +
Preference number: 5 (lower is better)
Translates to: GSHVSTLIINMFMTG*HLLHSIDIHIYVCG
Trigger: ACCACACACATAGATGTGGATGTCAATACTGTGAAGCAGATGCCACCCTGTCATGAACATATTTATAATCAGCGTAGATACATGAGATCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000380003.8
ENST00000488117.5
ENST00000619707.5
ENST00000644136.1
ENST00000647196.1
ENST00000673600.1
CDS-3UTR CAA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTAAAGCAATCTCTGTCTaGGCAACAGCTGGAGATGGC +
Preference number: 5 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGKAISV*ATAGDG
Trigger: GCCATCTCCAGCTGTTGCCAAGACAGAGATTGCTTT...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CAA 90 bp GCCATTAAGGCTCTTAGGTTAAACACACTCATGCCTCTGATACTCCATCATGAGGCTAATAAAGGTGATTaGCCACTTAAAGCAATCTCT +
Preference number: 5 (lower is better)
Translates to: AIKALRLNTLMPLILHHEANKGD*PLKAIS
Trigger: AGAGATTGCTTTAAGTGGCAAATCACCTTTATTAGC...CTCATGATGGAGTATCAGAGGCATGAGTGTGTTTAACCTAAGAGCCTTAATGGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379997.7
CDS-3UTR CAA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTTGGAGCATACATGACTaGCCGGAAAGGCAGCACAAA +
Preference number: 5 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGWSIHD*PERQHK
Trigger: TTTGTGCTGCCTTTCCGGCAAGTCATGTATGCTCCA...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CAA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTGCACAAAGCTTCCAGTaGAATCCTTTAGCAGGCCTT +
Preference number: 5 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGAQSFQ*NPLAGL
Trigger: AAGGCCTGCTAAAGGATTCAACTGGAAGCTTTGTGC...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CAA 90 bp ACTGAGCTACAGTACAACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCGGCTCTAGTTTTCAGTaGATTGCAGAAGTATTACAG +
Preference number: 5 (lower is better)
Translates to: TELQYNSHLVQWLSKTSSGSSFQ*IAEVLQ
Trigger: CTGTAATACTTCTGCAATCAACTGAAAACTAGAGCC...GCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTTGTACTGTAGCTCAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR CAA 90 bp GCAAACAGCAACAACTTCAAAAACATAGGCAGAAATGCAAGAAGGAAGTACTCAATTCCTTATAGCCTATaGCAGGCAAACAGCAACAAC +
Preference number: 5 (lower is better)
Translates to: ANSNNFKNIGRNARRKYSIPYSL*QANSNN
Trigger: GTTGTTGCTGTTTGCCTGCAATAGGCTATAAGGAAT...TGAGTACTTCCTTCTTGCATTTCTGCCTATGTTTTTGAAGTTGTTGCTGTTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CAA 90 bp AACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTATCTGCTTCACAGTATaGACATCCACATCTATGTGT +
Preference number: 5 (lower is better)
Translates to: NSHLVQWLSKTSSCPHLSICFTV*TSTSMC
Trigger: ACACATAGATGTGGATGTCAATACTGTGAAGCAGAT...AGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR CAA 90 bp ATATTCTCTAAGGCATTTTATAATCTCAGAGTTGCAATGATTGCCAAAGCAGGTATTCCTTATAGCCTATaGCAGGCAAACAGCAACAAC +
Preference number: 5 (lower is better)
Translates to: IFSKAFYNLRVAMIAKAGIPYSL*QANSNN
Trigger: GTTGTTGCTGTTTGCCTGCAATAGGCTATAAGGAAT...ACCTGCTTTGGCAATCATTGCAACTCTGAGATTATAAAATGCCTTAGAGAATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380003.8
ENST00000619707.5
ENST00000644136.1
CDS-3UTR CAA 90 bp AACAGTCATCTAGTTCAGTGGTTGTCTAAAACATCAAGCTGTCCACATCTTTCTTTCGAACATGTCATTTaGTTGTGTAAATTTGGTGGG +
Preference number: 5 (lower is better)
Translates to: NSHLVQWLSKTSSCPHLSFEHVI*LCKFGG
Trigger: CCCACCAAATTTACACAACAAAATGACATGTTCGAA...AGAAAGATGTGGACAGCTTGATGTTTTAGACAACCACTGAACTAGATGACTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS-3UTR CAA 90 bp GCAAACAGCAACAACTTCAAAAACATAGGCAGAAATGCAAGAAGGAAGTACTCATTCGAACATGTCATTTaGTTGTGTAAATTTGGTGGG +
Preference number: 5 (lower is better)
Translates to: ANSNNFKNIGRNARRKYSFEHVI*LCKFGG
Trigger: CCCACCAAATTTACACAACAAAATGACATGTTCGAA...TGAGTACTTCCTTCTTGCATTTCTGCCTATGTTTTTGAAGTTGTTGCTGTTTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000380003.8
ENST00000619707.5
CDS TCA 90 bp TGCGTATCGTCTTCTATATATTTTATTAGTGTCAAGGCTTTTCTGTaGAGGACAAGTAGAAACTGTGCAAGGAAAGTACTTCTGAGAGAT +
Preference number: 5 (lower is better)
Translates to: CVSSSIYFISVKAFL*RTSRNCARKVLLRD
Trigger: ATCTCTCAGAAGTACTTTCCTTGCACAGTTTCTACTTGTCCTTCACAGAAAAGCCTTGACACTAATAAAATATATAGAAGACGATACGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000380003.8
ENST00000488117.5
ENST00000619707.5
ENST00000644136.1
CDS TCA 90 bp CTTGTATCGTCTTCTATATATTTTATTAGTGTCAAGGCTTTTCTGTaGAGGACAAGTAGAAACTGTGCAAGGAAAGTACTTCTGAGAGAT +
Preference number: 5 (lower is better)
Translates to: LVSSSIYFISVKAFL*RTSRNCARKVLLRD
Trigger: ATCTCTCAGAAGTACTTTCCTTGCACAGTTTCTACTTGTCCTTCACAGAAAAGCCTTGACACTAATAAAATATATAGAAGACGATACAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000673600.1
CDS CCA 90 bp ATGCTTGGTAAATTTACTGTATGGCATCTCAAAACCTTTAACATTTaGCTACATACTGTGACTCTTCAGGTGAATTATATCATCTGCAGA +
Preference number: 5 (lower is better)
Translates to: MLGKFTVWHLKTFNI*LHTVTLQVNYIICR
Trigger: TCTGCAGATGATATAATTCACCTGAAGAGTCACAGTATGTAGCCAAATGTTAAAGGTTTTGAGATGCCATACAGTAAATTTACCAAGCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488117.5
CDS CAA 72 bp AGCGTCATCTTTTACGTGGGCGGAACTTGTCGCTGTTaGACGCACCTCTCTTTCCTAGCGGGACACCGTAGG +
Preference number: 6 (lower is better)
Translates to: SVIFYVGGTCRC*THLSFLAGHRR
Trigger: CCTACGGTGTCCCGCTAGGAAAGAGAGGTGCGTCAAACAGCGACAAGTTCCGCCCACGTAAAAGATGACGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379997.7
ENST00000619707.5
CDS CCA 72 bp AGCAATCTCTGTCTTGGCAACAGCTGGAGATGGCGGTaGGCAAAGAGTCGACATCACTGCATTCCAACTGTC +
Preference number: 6 (lower is better)
Translates to: SNLCLGNSWRWR*AKSRHHCIPTV
Trigger: GACAGTTGGAATGCAGTGATGTCGACTCTTTGCCCACCGCCATCTCCAGCTGTTGCCAAGACAGAGATTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENST00000379995.1
ENST00000379997.7
ENST00000380003.8
ENST00000488117.5
ENST00000619707.5
ENST00000644136.1
ENST00000647196.1
ENST00000673600.1
CDS GCA 72 bp AGCTGGAGATGGCGGTGGGCAAAGAGTCGACATCACTaGATTCCAACTGTCACATTATCCAAATGCTCCGGA +
Preference number: 6 (lower is better)
Translates to: SWRWRWAKSRHH*IPTVTLSKCSG
Trigger: TCCGGAGCATTTGGATAATGTGACAGTTGGAATGCAGTGATGTCGACTCTTTGCCCACCGCCATCTCCAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENST00000379995.1
ENST00000379997.7
ENST00000380003.8
ENST00000488117.5
ENST00000619707.5
ENST00000644136.1
ENST00000647196.1
ENST00000673600.1
CDS TCA 72 bp CCACATCTATGTGTGTGGTGGGATATGGAGCATACATaGCTTGCCGGAAAGGCAGCACAAAGCTTCCAGTTG +
Preference number: 6 (lower is better)
Translates to: PHLCVWWDMEHT*LAGKAAQSFQL
Trigger: CAACTGGAAGCTTTGTGCTGCCTTTCCGGCAAGTCATGTATGCTCCATATCCCACCACACACATAGATGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000380003.8
ENST00000488117.5
ENST00000619707.5
ENST00000644136.1
ENST00000647196.1
ENST00000673600.1
CDS TCA 72 bp AGTGTAGATGATCGTATCCTGAGCCATGTCTTCTTCTaGAGTGGCTCTCCAGAAGGCTGTCAGCTCGGATCT +
Preference number: 6 (lower is better)
Translates to: SVDDRILSHVFF*SGSPEGCQLGS
Trigger: AGATCCGAGCTGACAGCCTTCTGGAGAGCCACTTCAGAAGAAGACATGGCTCAGGATACGATCATCTACACT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000380003.8
ENST00000488117.5
ENST00000619707.5
ENST00000644136.1
ENST00000647196.1
ENST00000673600.1
CDS TCA 72 bp GCCAGTCTTTTGAGGGAAGCCAAGATTCAAATTGAGTaGGACGGTGGCTTGCTCACAGGGTTCATGAGAGGT +
Preference number: 6 (lower is better)
Translates to: ASLLREAKIQIE*DGGLLTGFMRG
Trigger: ACCTCTCATGAACCCTGTGAGCAAGCCACCGTCTCACTCAATTTGAATCTTGGCTTCCCTCAAAAGACTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000647196.1
CDS GCA 72 bp GCACTGCTACCTACTACAACGGAACAGCCACAGGTTTaGAAGTGTGAGCTGATGGCATTGAGAAGAAAGCCT +
Preference number: 6 (lower is better)
Translates to: ALLPTTTEQPQV*KCELMALRRKP
Trigger: AGGCTTTCTTCTCAATGCCATCAGCTCACACTTGCAAACCTGTGGCTGTTCCGTTGTAGTAGGTAGCAGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000380003.8
ENST00000488117.5
ENST00000619707.5
ENST00000644136.1
ENST00000647196.1
ENST00000673600.1
CDS GCA 72 bp TCTATGTGTGTGGTGGGATATGGAGCATACATGACTTaGCGGAAAGGCAGCACAAAGCTTCCAGTTGAATCC +
Preference number: 6 (lower is better)
Translates to: SMCVVGYGAYMT*RKGSTKLPVES
Trigger: GGATTCAACTGGAAGCTTTGTGCTGCCTTTCCGGCAAGTCATGTATGCTCCATATCCCACCACACACATAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000380003.8
ENST00000488117.5
ENST00000619707.5
ENST00000644136.1
ENST00000647196.1
ENST00000673600.1
CDS TCA 72 bp TATGTTCATGACAGGGTGGCATCTGCTTCACAGTATTaGCATCCACATCTATGTGTGTGGTGGGATATGGAG +
Preference number: 6 (lower is better)
Translates to: YVHDRVASASQY*HPHLCVWWDME
Trigger: CTCCATATCCCACCACACACATAGATGTGGATGTCAATACTGTGAAGCAGATGCCACCCTGTCATGAACATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000380003.8
ENST00000488117.5
ENST00000619707.5
ENST00000644136.1
ENST00000647196.1
ENST00000673600.1
CDS TCA 72 bp GAAGGACAAGTAGAAACTGTGCAAGGAAAGTACTTCTaGGAGATAAGCCAGGTTTCAGCTGAAAGACCTGAT +
Preference number: 6 (lower is better)
Translates to: EGQVETVQGKYF*EISQVSAERPD
Trigger: ATCAGGTCTTTCAGCTGAAACCTGGCTTATCTCTCAGAAGTACTTTCCTTGCACAGTTTCTACTTGTCCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000380003.8
ENST00000488117.5
ENST00000619707.5
ENST00000644136.1
ENST00000673600.1
CDS CCA 72 bp CAGTTCCATTACAGGAATCACTTCTCCAGTAAGCATTaGAATAATACTCTGACCCTGATCTTCCATTCTCTC +
Preference number: 6 (lower is better)
Translates to: QFHYRNHFSSKH*NNTLTLIFHSL
Trigger: GAGAGAATGGAAGATCAGGGTCAGAGTATTATTCCAATGCTTACTGGAGAAGTGATTCCTGTAATGGAACTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENST00000379995.1
ENST00000379997.7
ENST00000380003.8
ENST00000488117.5
ENST00000619707.5
ENST00000644136.1
ENST00000647196.1
ENST00000673600.1
CDS CCA 72 bp CTCTCTGCATTTCGAAGGATTTCTCCATTTAGAGTGTaGTTGGCAAGAAAAGTTATTTCTCCATCACTGAGA +
Preference number: 6 (lower is better)
Translates to: LSAFRRISPFRV*LARKVISPSLR
Trigger: TCTCAGTGATGGAGAAATAACTTTTCTTGCCAACCACACTCTAAATGGAGAAATCCTTCGAAATGCAGAGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENST00000379995.1
ENST00000379997.7
ENST00000380003.8
ENST00000488117.5
ENST00000619707.5
ENST00000644136.1
ENST00000647196.1
ENST00000673600.1
CDS CCA 72 bp GTATCTACGCTGATTATAAATATGTTCATGACAGGGTaGCATCTGCTTCACAGTATTGACATCCACATCTAT +
Preference number: 6 (lower is better)
Translates to: VSTLIINMFMTG*HLLHSIDIHIY
Trigger: ATAGATGTGGATGTCAATACTGTGAAGCAGATGCCACCCTGTCATGAACATATTTATAATCAGCGTAGATAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000380003.8
ENST00000488117.5
ENST00000619707.5
ENST00000644136.1
ENST00000647196.1
ENST00000673600.1
CDS GCA 72 bp CTACATACTGTGACTCTTCAGGTGAATTATATCATCTaGAGACTTTCTCAGACTTATTTGACCATGCAACTT +
Preference number: 6 (lower is better)
Translates to: LHTVTLQVNYII*RLSQTYLTMQL
Trigger: AAGTTGCATGGTCAAATAAGTCTGAGAAAGTCTGCAGATGATATAATTCACCTGAAGAGTCACAGTATGTAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488117.5
CDS CAA 72 bp TTCAAACTCACTGTTGCCACAAGGTGTCTTAGCAATTaGATGAGATTACATTGCCTCCTTATACTACTAGAT +
Preference number: 6 (lower is better)
Translates to: FKLTVATRCLSN*MRLHCLLILLD
Trigger: ATCTAGTAGTATAAGGAGGCAATGTAATCTCATCAAATTGCTAAGACACCTTGTGGCAACAGTGAGTTTGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488117.5