RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ATRAID (Homo sapiens)

Ensembl gene IDs: ENSG00000138085

Ensembl transcript IDs: ENST00000380171.8, ENST00000405489.7, ENST00000419744.1, ENST00000472515.1, ENST00000484646.1, ENST00000491220.1, ENST00000611786.4

Found 186 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTaGGGCGAATCCACTGGCGAAAGATGCCTTTCTAGGAAGCAGAGC +
Preference number: 1 (lower is better)
Translates to: TKGVQFFIFQWRPQP*GESTGERCLSRKQS
Trigger: GCTCTGCTTCCTAGAAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
3UTR GCA 90 bp GGCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTaGAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAAT +
Preference number: 1 (lower is better)
Translates to: GNNTNGNWYLSTPRE*NFSSSNGGLNLEAN
Trigger: ATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
3UTR-3UTR TCA 90 bp GCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTTGGCGGCCTCAACCTTaGGGCGAATCCACTGGCGAA +
Preference number: 2 (lower is better)
Translates to: ATTPMGTGICLHQGSAIFWRPQP*GESTGE
Trigger: TTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCA...AAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGC
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
3UTR-3UTR GCA 90 bp ATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTCCACTGGCGAAAGATaGCTTTCTAGGAAGCAGAGC +
Preference number: 2 (lower is better)
Translates to: ICLHQGSAIFHLPMAASTSTGER*LSRKQS
Trigger: GCTCTGCTTCCTAGAAAGGCATCTTTCGCCAGTGGA...GGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
3UTR-3UTR CCA 90 bp AATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGCAGAGCTCCCTGACTaGGCTAAGATAGTTCAGATT +
Preference number: 2 (lower is better)
Translates to: NFSSSNGGLNLEANPLAKAELPD*AKIVQI
Trigger: AATCTGAACTATCTTAGCCCAGTCAGGGAGCTCTGC...TTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
3UTR-3UTR CCA 90 bp TGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGGCAGAGCTCCCTGACTaGGCTAAGATAGTTCAGATT +
Preference number: 2 (lower is better)
Translates to: CLHQGSAIFHLPMAASTLAELPD*AKIVQI
Trigger: AATCTGAACTATCTTAGCCCAGTCAGGGAGCTCTGC...CAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
3UTR-3UTR CCA 90 bp TATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACGCAGAGCTCCCTGACTaGGCTAAGATAGTTCAGATT +
Preference number: 2 (lower is better)
Translates to: YLSTPRECNFSSSNGGLNAELPD*AKIVQI
Trigger: AATCTGAACTATCTTAGCCCAGTCAGGGAGCTCTGC...GTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
3UTR-3UTR CAA 90 bp GGCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTATGGCGGCCTCAACCTaGAGGCGAATCCACTGGCGA +
Preference number: 3 (lower is better)
Translates to: GNNTNGNWYLSTPRECNFMAAST*RRIHWR
Trigger: TCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCAT...AAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
3UTR GCA 72 bp ACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTaGAATTTTTCATCTTCCAATGGCGGCCTCAACCTT +
Preference number: 3 (lower is better)
Translates to: TNGNWYLSTPRE*NFSSSNGGLNL
Trigger: AAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
3UTR CCA 72 bp AAAGTGTTTATTATAGGCAACAACACCAATGGGAACTaGTATTTGTCTACACCAAGGGAGTGCAATTTTTCA +
Preference number: 3 (lower is better)
Translates to: KVFIIGNNTNGN*YLSTPRECNFS
Trigger: TGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGCCTATAATAAACACTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTAGAAGGGGGAGCCGCTaGCGAGCGCGACGCACGGCT +
Preference number: 4 (lower is better)
Translates to: SSNGGLNLEANPLAKDAFRRGSR*RARRTA
Trigger: AGCCGTGCGTCGCGCTCGCCAGCGGCTCCCCCTTCT...AAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000405489.7
CDS-3UTR CCA 90 bp AGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCCTCTTCCCCGGGCGTaGCCTAAGCGGCCCGGTCCA +
Preference number: 4 (lower is better)
Translates to: SAIFHLPMAASTLRRIHWPLPRA*PKRPGP
Trigger: TGGACCGGGCCGCTTAGGCCACGCCCGGGGAAGAGG...CCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR GCA 90 bp GGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTTTCCGTTCCCTTGGTaGTCCGCTGCTCGCGCGACC +
Preference number: 4 (lower is better)
Translates to: GSAIFHLPMAASTLRRIHFPFPW*SAARAT
Trigger: GGTCGCGCGAGCAGCGGAGCACCAAGGGAACGGAAA...GTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR CCA 90 bp CTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTCTAGGAAGCAGAGCTCGTGGAGCTCTGCGCTaGTCTTCATGCGCCCTAGCC +
Preference number: 4 (lower is better)
Translates to: LNLEANPLAKDAFLGSRARGALR*SSCALA
Trigger: GGCTAGGGCGCATGAAGACCAGCGCAGAGCTCCACG...AGCTCTGCTTCCTAGAAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR CCA 90 bp GAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGCCGGTCCAGTCGCCCTaGGGCTGCTTGGGGGCTTTT +
Preference number: 4 (lower is better)
Translates to: ECNFSSSNGGLNLEANPLPVQSP*GCLGAF
Trigger: AAAAGCCCCCAAGCAGCCCCAGGGCGACTGGACCGG...CAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR GCA 90 bp CTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTCTAGGAAGCAGAGCTCTTGGGGGCTTTTCCTaGTCGTGGAGCTCTGCGCTG +
Preference number: 4 (lower is better)
Translates to: LNLEANPLAKDAFLGSRALGGFS*SWSSAL
Trigger: CAGCGCAGAGCTCCACGAGCAGGAAAAGCCCCCAAG...AGCTCTGCTTCCTAGAAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR GCA 90 bp CAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCTTTCCGTTCCCTTGGTaGTCCGCTGCTCGCGCGACC +
Preference number: 4 (lower is better)
Translates to: QGSAIFHLPMAASTLRRIFPFPW*SAARAT
Trigger: GGTCGCGCGAGCAGCGGAGCACCAAGGGAACGGAAA...GATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR GCA 90 bp TCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTCTACCAGCCCCAAGATGGTaGCCTTCTGATTCAGGCAGC +
Preference number: 4 (lower is better)
Translates to: SNGGLNLEANPLAKDAFLPAPRW*PSDSGS
Trigger: GCTGCCTGAATCAGAAGGGCACCATCTTGGGGCTGG...TAGAAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGCCGGTCCAGTCGCCCTaGGGCTGCTTGGGGGCTTTT +
Preference number: 4 (lower is better)
Translates to: CLHQGSAIFHLPMAASTLPVQSP*GCLGAF
Trigger: AAAAGCCCCCAAGCAGCCCCAGGGCGACTGGACCGG...CAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR CCA 90 bp GGCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTCCTCTTCCCCGGGCGTaGCCTAAGCGGCCCGGTCCA +
Preference number: 4 (lower is better)
Translates to: GNNTNGNWYLSTPRECNFPLPRA*PKRPGP
Trigger: TGGACCGGGCCGCTTAGGCCACGCCCGGGGAAGAGG...AAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR CCA 90 bp AGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCAGGGTGCATATCTGGCTaGGCAGGGTCGGGAAGCGTC +
Preference number: 4 (lower is better)
Translates to: RECNFSSSNGGLNLEANPGCISG*AGSGSV
Trigger: GACGCTTCCCGACCCTGCCCAGCCAGATATGCACCC...TGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000405489.7
CDS-3UTR TCA 90 bp AGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGAGACTACCCGGGTCGTaGGGCGCCATTTTCCGTTCC +
Preference number: 4 (lower is better)
Translates to: SAIFHLPMAASTLRRIHWRLPGS*GAIFRS
Trigger: GGAACGGAAAATGGCGCCTCACGACCCGGGTAGTCT...CCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR TCA 90 bp CAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCTGGCGGCCTCAACCTTaGGGCGAATCCACTGGCGAA +
Preference number: 4 (lower is better)
Translates to: QGSAIFHLPMAASTLRRIWRPQP*GESTGE
Trigger: TTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCA...GATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp TCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTTCCCTGGACATTGGGTaGATATCTCGGGTAGCGCCA +
Preference number: 4 (lower is better)
Translates to: SSNGGLNLEANPLAKDAFSLDIG*ISRVAP
Trigger: TGGCGCTACCCGAGATATGCACCCAATGTCCAGGGA...AAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR GCA 90 bp GGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACCCAGCCCCAAGATGGTaGCCTTCTGATTCAGGCAGC +
Preference number: 4 (lower is better)
Translates to: GSAIFHLPMAASTLRRIHPAPRW*PSDSGS
Trigger: GCTGCCTGAATCAGAAGGGCACCATCTTGGGGCTGG...GTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp GGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCAGCGCGACGCACGGCTaGCCAGCGACCCTGCTTCAG +
Preference number: 4 (lower is better)
Translates to: GNWYLSTPRECNFSSSNGSATHG*PATLLQ
Trigger: CTGAAGCAGGGTCGCTGGCCAGCCGTGCGTCGCGCT...GCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000405489.7
CDS-3UTR TCA 90 bp AATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAAGACTACCCGGGTCGTaGGGCGCCATTTTCCGTTCC +
Preference number: 4 (lower is better)
Translates to: NFSSSNGGLNLEANPLAKRLPGS*GAIFRS
Trigger: GGAACGGAAAATGGCGCCTCACGACCCGGGTAGTCT...TTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR TCA 90 bp TCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTGAAGAACATAAGCAGTaGGAACGAGCCCTGGCGCAT +
Preference number: 4 (lower is better)
Translates to: SSNGGLNLEANPLAKDAFEEHKQ*ERALAH
Trigger: ATGCGCCAGGGCTCGTTCTCACTGCTTATGTTCTTC...AAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp ATAGGCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATCTTCCCGGAGCCGACTaGAGACTCCCTCAGCCCGGT +
Preference number: 4 (lower is better)
Translates to: IGNNTNGNWYLSTPRECNLPGAD*RLPQPG
Trigger: ACCGGGCTGAGGGAGTCTGCAGTCGGCTCCGGGAAG...ATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGCCTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR GCA 90 bp AATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAACTGCGCTGGTCTTCATaGGCCCTAGCCCTCTTTCGG +
Preference number: 4 (lower is better)
Translates to: NFSSSNGGLNLEANPLAKLRWSS*ALALFR
Trigger: CCGAAAGAGGGCTAGGGCGCATGAAGACCAGCGCAG...TTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR CCA 90 bp GAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGCATTGGGTGCATATCTaGCTGGGCAGGGTCGGGAAG +
Preference number: 4 (lower is better)
Translates to: ECNFSSSNGGLNLEANPLHWVHI*LGRVGK
Trigger: CTTCCCGACCCTGCCCAGCCAGATATGCACCCAATG...CAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000405489.7
CDS-3UTR CCA 90 bp AGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGACGCTCCCTGGACATTaGGTGCATATCTGGCTGGGC +
Preference number: 4 (lower is better)
Translates to: SAIFHLPMAASTLRRIHWTLPGH*VHIWLG
Trigger: GCCCAGCCAGATATGCACCCAATGTCCAGGGAGCGT...CCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000405489.7
CDS-3UTR GCA 90 bp CCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCACTTCCCGGAGCCGACTaGAGACTCCCTCAGCCCGGT +
Preference number: 4 (lower is better)
Translates to: PMGTGICLHQGSAIFHLPLPGAD*RLPQPG
Trigger: ACCGGGCTGAGGGAGTCTGCAGTCGGCTCCGGGAAG...TGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR GCA 90 bp CAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCAGGCAGCAACGGGCATaGAGCATTAGCTCTCGTGTC +
Preference number: 4 (lower is better)
Translates to: QGSAIFHLPMAASTLRRIRQQRA*SISSRV
Trigger: GACACGAGAGCTAATGCTGCATGCCCGTTGCTGCCT...GATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp TCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTCTATCCACTGGCGAAAGATaGCTTTCTAGGAAGCAGAGC +
Preference number: 4 (lower is better)
Translates to: SNGGLNLEANPLAKDAFLSTGER*LSRKQS
Trigger: GCTCTGCTTCCTAGAAAGGCATCTTTCGCCAGTGGA...TAGAAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp ATAGGCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATGCTGGCCAGCGACCCTaGTTCAGCCCGACCTCAAAC +
Preference number: 4 (lower is better)
Translates to: IGNNTNGNWYLSTPRECNAGQRP*FSPTSN
Trigger: GTTTGAGGTCGGGCTGAAGCAGGGTCGCTGGCCAGC...ATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGCCTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000405489.7
CDS-3UTR CCA 90 bp TTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATCTCTTTCGGGGATACTaGCCGACCCCCTCTTCCTTT +
Preference number: 4 (lower is better)
Translates to: FSSSNGGLNLEANPLAKDLFRGY*PTPSSF
Trigger: AAAGGAAGAGGGGGTCGGCCAGTATCCCCGAAAGAG...ATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR CCA 90 bp AGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTCTTTCGGGGATACTaGCCGACCCCCTCTTCCTTT +
Preference number: 4 (lower is better)
Translates to: RECNFSSSNGGLNLEANPLFRGY*PTPSSF
Trigger: AAAGGAAGAGGGGGTCGGCCAGTATCCCCGAAAGAG...TGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR CCA 90 bp TCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTTGCCTGATGAAAGTTTaGACCAGGGTCCTCCAGAGA +
Preference number: 4 (lower is better)
Translates to: SSNGGLNLEANPLAKDAFCLMKV*TRVLQR
Trigger: TCTCTGGAGGACCCTGGTCCAAACTTTCATCAGGCA...AAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTCTATGCCTGATGAAAGTTTaGACCAGGGTCCTCCAGAGA +
Preference number: 4 (lower is better)
Translates to: SNGGLNLEANPLAKDAFLCLMKV*TRVLQR
Trigger: TCTCTGGAGGACCCTGGTCCAAACTTTCATCAGGCA...TAGAAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTCTAAGTGAGAACGAGCCCTaGCGCATACACTTGTATCCA +
Preference number: 4 (lower is better)
Translates to: SNGGLNLEANPLAKDAFLSENEP*RIHLYP
Trigger: TGGATACAAGTGTATGCGCCAGGGCTCGTTCTCACT...TAGAAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATTGGAGACGGATAGAGTaGTGGCTCCCAGAATCCCGA +
Preference number: 4 (lower is better)
Translates to: FSSSNGGLNLEANPLAKDWRRIE*WLPESR
Trigger: TCGGGATTCTGGGAGCCACCACTCTATCCGTCTCCA...ATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp GAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGTTGGCTTTTCGGCGCTaGGTCGCCCAAAGCAGAATG +
Preference number: 4 (lower is better)
Translates to: ECNFSSSNGGLNLEANPLLAFRR*VAQSRM
Trigger: CATTCTGCTTTGGGCGACCCAGCGCCGAAAAGCCAA...CAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR TCA 90 bp TGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAAGATGGTGCCCTTCTaGTTCAGGCAGCAACGGGCA +
Preference number: 4 (lower is better)
Translates to: CLHQGSAIFHLPMAASTLKMVPF*FRQQRA
Trigger: TGCCCGTTGCTGCCTGAATCAGAAGGGCACCATCTT...CAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp AATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAATCCCTGGACATTGGGTaGATATCTCGGGTAGCGCCA +
Preference number: 4 (lower is better)
Translates to: NFSSSNGGLNLEANPLAKSLDIG*ISRVAP
Trigger: TGGCGCTACCCGAGATATGCACCCAATGTCCAGGGA...TTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR CCA 90 bp GCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCGTGGAGCTCTGCGCTaGTCTTCATGCGCCCTAGCC +
Preference number: 4 (lower is better)
Translates to: ATTPMGTGICLHQGSAIFRGALR*SSCALA
Trigger: GGCTAGGGCGCATGAAGACCAGCGCAGAGCTCCACG...AAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR CCA 90 bp TATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCATTTTCCGTTCCCTTaGTGCTCCGCTGCTCGCGCG +
Preference number: 4 (lower is better)
Translates to: YLSTPRECNFSSSNGGLNHFPFP*CSAARA
Trigger: CGCGCGAGCAGCGGAGCACCAAGGGAACGGAAAATG...GTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR CCA 90 bp TCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTCTAATTTTGCACGCTCCCTaGACATTGGGTGCATATCTC +
Preference number: 4 (lower is better)
Translates to: SNGGLNLEANPLAKDAFLILHAP*TLGAYL
Trigger: GAGATATGCACCCAATGTCCAGGGAGCGTGCAAAAT...TAGAAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR CCA 90 bp CTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTCTAGGAAGCAGAGCTTCCAGAGAACAGTTCTaGAGATCCAGCCCCAAGATG +
Preference number: 4 (lower is better)
Translates to: LNLEANPLAKDAFLGSRASREQF*RSSPKM
Trigger: CATCTTGGGGCTGGATCTCCAGAACTGTTCTCTGGA...AGCTCTGCTTCCTAGAAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTCTCAGGACACATTTCTaGGTCCCCAGTGTTATTGCA +
Preference number: 4 (lower is better)
Translates to: SSNGGLNLEANPLAKDAFLRTHF*VPSVIA
Trigger: TGCAATAACACTGGGGACCCAGAAATGTGTCCTGAG...AAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATAGACGGATAGAGTGGTaGCTCCCAGAATCCCGAAGA +
Preference number: 4 (lower is better)
Translates to: FSSSNGGLNLEANPLAKDRRIEW*LPESRR
Trigger: TCTTCGGGATTCTGGGAGCCACCACTCTATCCGTCT...ATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp AGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCAAGACGGATAGAGTGGTaGCTCCCAGAATCCCGAAGA +
Preference number: 4 (lower is better)
Translates to: RECNFSSSNGGLNLEANPRRIEW*LPESRR
Trigger: TCTTCGGGATTCTGGGAGCCACCACTCTATCCGTCT...TGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR TCA 90 bp AATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGAAGAACATAAGCAGTaGGAACGAGCCCTGGCGCAT +
Preference number: 4 (lower is better)
Translates to: NFSSSNGGLNLEANPLAKEEHKQ*ERALAH
Trigger: ATGCGCCAGGGCTCGTTCTCACTGCTTATGTTCTTC...TTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR TCA 90 bp CAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCTGGCGGCCTCAACCTTaGGGCGAATCCACTGGCGAA +
Preference number: 4 (lower is better)
Translates to: QQHQWELVFVYTKGVQFFWRPQP*GESTGE
Trigger: TTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCA...GAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp GCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCTGCGCTGGTCTTCATaGGCCCTAGCCCTCTTTCGG +
Preference number: 4 (lower is better)
Translates to: ATTPMGTGICLHQGSAIFLRWSS*ALALFR
Trigger: CCGAAAGAGGGCTAGGGCGCATGAAGACCAGCGCAG...AAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR GCA 90 bp TTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTAGGCAGCAACGGGCATaGAGCATTAGCTCTCGTGTC +
Preference number: 4 (lower is better)
Translates to: FVYTKGVQFFIFQWRPQPRQQRA*SISSRV
Trigger: GACACGAGAGCTAATGCTGCATGCCCGTTGCTGCCT...AGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp ATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCAGGCAGCAACGGGCATaGAGCATTAGCTCTCGTGTC +
Preference number: 4 (lower is better)
Translates to: ICLHQGSAIFHLPMAASTRQQRA*SISSRV
Trigger: GACACGAGAGCTAATGCTGCATGCCCGTTGCTGCCT...GGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp CTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTCTAGGAAGCAGAGCTTTGAGGGGGTTTGCTTaGAGGTCTATGATGACAGTG +
Preference number: 4 (lower is better)
Translates to: LNLEANPLAKDAFLGSRALRGFA*RSMMTV
Trigger: CACTGTCATCATAGACCTGCAAGCAAACCCCCTCAA...AGCTCTGCTTCCTAGAAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp GGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACACCTTTGAGGGGGTTTaGTTGCAGGTCTATGATGAC +
Preference number: 4 (lower is better)
Translates to: GSAIFHLPMAASTLRRIHTFEGV*LQVYDD
Trigger: GTCATCATAGACCTGCAAGCAAACCCCCTCAAAGGT...GTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp TCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTCTATCAGCACAAACACACTaGAAAAGACCTGGACCATCA +
Preference number: 4 (lower is better)
Translates to: SNGGLNLEANPLAKDAFLSAQTH*KRPGPS
Trigger: TGATGGTCCAGGTCTTTTGCAGTGTGTTTGTGCTGA...TAGAAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp AGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCATCCACTGGCGAAAGATaGCTTTCTAGGAAGCAGAGC +
Preference number: 4 (lower is better)
Translates to: RECNFSSSNGGLNLEANPSTGER*LSRKQS
Trigger: GCTCTGCTTCCTAGAAAGGCATCTTTCGCCAGTGGA...TGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp TTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTGCCCGACCTCAAACTTaGTTCTGTACCTCGGGTAGC +
Preference number: 4 (lower is better)
Translates to: FVYTKGVQFFIFQWRPQPARPQT*FCTSGS
Trigger: GCTACCCGAGGTACAGAAGCAAGTTTGAGGTCGGGC...AGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000405489.7
CDS-3UTR CCA 90 bp GGCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTGGCTTTTCCTGCTCGTaGAGCTCTGCGCTGGTCTTC +
Preference number: 4 (lower is better)
Translates to: GNNTNGNWYLSTPRECNFGFSCS*SSALVF
Trigger: GAAGACCAGCGCAGAGCTCCACGAGCAGGAAAAGCC...AAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR CCA 90 bp CAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCCATTTTCCGTTCCCTTaGTGCTCCGCTGCTCGCGCG +
Preference number: 4 (lower is better)
Translates to: QQHQWELVFVYTKGVQFFHFPFP*CSAARA
Trigger: CGCGCGAGCAGCGGAGCACCAAGGGAACGGAAAATG...GAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR CCA 90 bp TGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCACGCTCCCTGGACATTaGGTGCATATCTCGGGTAGC +
Preference number: 4 (lower is better)
Translates to: WYLSTPRECNFSSSNGGLTLPGH*VHISGS
Trigger: GCTACCCGAGATATGCACCCAATGTCCAGGGAGCGT...GAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR CCA 90 bp CTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTCTAGGAAGCAGAGCTCTCAGGACACATTTCTaGGTCCCCAGTGTTATTGCA +
Preference number: 4 (lower is better)
Translates to: LNLEANPLAKDAFLGSRALRTHF*VPSVIA
Trigger: TGCAATAACACTGGGGACCCAGAAATGTGTCCTGAG...AGCTCTGCTTCCTAGAAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTACACTGCAAAAGACCTaGACCATCAGGTACACAAGA +
Preference number: 4 (lower is better)
Translates to: SSNGGLNLEANPLAKDAFTLQKT*TIRYTR
Trigger: TCTTGTGTACCTGATGGTCCAGGTCTTTTGCAGTGT...AAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTTGGCTTTTCGGCGCTaGGTCGCCCAAAGCAGAATG +
Preference number: 4 (lower is better)
Translates to: FVYTKGVQFFIFQWRPQPLAFRR*VAQSRM
Trigger: CATTCTGCTTTGGGCGACCCAGCGCCGAAAAGCCAA...AGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR TCA 90 bp GAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGTTCCTCCAGGACAGTTaGCATGTTGTGGCAGTATCA +
Preference number: 4 (lower is better)
Translates to: ECNFSSSNGGLNLEANPLFLQDS*HVVAVS
Trigger: TGATACTGCCACAACATGTCAACTGTCCTGGAGGAA...CAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp TCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTCTAACTTTTGACAAATTTTaGACGCTCCCTGGACATTGG +
Preference number: 4 (lower is better)
Translates to: SNGGLNLEANPLAKDAFLTFDKF*TLPGHW
Trigger: CCAATGTCCAGGGAGCGTGCAAAATTTGTCAAAAGT...TAGAAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp GCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCCAGCCCCAAGATGGTaGCCTTCTGATTCAGGCAGC +
Preference number: 4 (lower is better)
Translates to: ATTPMGTGICLHQGSAIFPAPRW*PSDSGS
Trigger: GCTGCCTGAATCAGAAGGGCACCATCTTGGGGCTGG...AAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp GAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGTTGAGGGGGTTTGCTTaGAGGTCTATGATGACAGTG +
Preference number: 4 (lower is better)
Translates to: ECNFSSSNGGLNLEANPLLRGFA*RSMMTV
Trigger: CACTGTCATCATAGACCTGCAAGCAAACCCCCTCAA...CAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp CCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCATCCCTGGACATTGGGTaGATATCTGGCTGGGCAGGG +
Preference number: 4 (lower is better)
Translates to: PMGTGICLHQGSAIFHLPSLDIG*ISGWAG
Trigger: CCCTGCCCAGCCAGATATGCACCCAATGTCCAGGGA...TGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000405489.7
CDS-3UTR CCA 90 bp TATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACGATCCAGCCCCAAGATaGTGCCCTTCTGATTCAGGC +
Preference number: 4 (lower is better)
Translates to: YLSTPRECNFSSSNGGLNDPAPR*CPSDSG
Trigger: GCCTGAATCAGAAGGGCACCATCTTGGGGCTGGATC...GTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp ATAGGCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATGATCCAGCCCCAAGATaGTGCCCTTCTGATTCAGGC +
Preference number: 4 (lower is better)
Translates to: IGNNTNGNWYLSTPRECNDPAPR*CPSDSG
Trigger: GCCTGAATCAGAAGGGCACCATCTTGGGGCTGGATC...ATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGCCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAGACGGATAGAGTGGTaGCTCCCAGAATCCCGAAGA +
Preference number: 4 (lower is better)
Translates to: WYLSTPRECNFSSSNGGLRRIEW*LPESRR
Trigger: TCTTCGGGATTCTGGGAGCCACCACTCTATCCGTCT...GAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp GGCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTGGAGACGGATAGAGTaGTGGCTCCCAGAATCCCGA +
Preference number: 4 (lower is better)
Translates to: GNNTNGNWYLSTPRECNFWRRIE*WLPESR
Trigger: TCGGGATTCTGGGAGCCACCACTCTATCCGTCTCCA...AAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACTTGGCTTTTCGGCGCTaGGTCGCCCAAAGCAGAATG +
Preference number: 4 (lower is better)
Translates to: YLSTPRECNFSSSNGGLNLAFRR*VAQSRM
Trigger: CATTCTGCTTTGGGCGACCCAGCGCCGAAAAGCCAA...GTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp AGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCAGCAGAGCTCCCTGACTaGGCTAAGATAGTTCAGATT +
Preference number: 4 (lower is better)
Translates to: RECNFSSSNGGLNLEANPAELPD*AKIVQI
Trigger: AATCTGAACTATCTTAGCCCAGTCAGGGAGCTCTGC...TGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTAACACCAATGGGAACTaGTATTTGTCTACACCAAGG +
Preference number: 4 (lower is better)
Translates to: SSNGGLNLEANPLAKDAFNTNGN*YLSTPR
Trigger: CCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTT...AAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTAGGCAACAACACCAATaGGAACTGGTATTTGTCTAC +
Preference number: 4 (lower is better)
Translates to: SSNGGLNLEANPLAKDAFRQQHQ*ELVFVY
Trigger: GTAGACAAATACCAGTTCCCATTGGTGTTGTTGCCT...AAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR TCA 90 bp GCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTAAGATGGTGCCCTTCTaGTTCAGGCAGCAACGGGCA +
Preference number: 4 (lower is better)
Translates to: ATTPMGTGICLHQGSAIFKMVPF*FRQQRA
Trigger: TGCCCGTTGCTGCCTGAATCAGAAGGGCACCATCTT...AAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp AATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAACCTTTGAGGGGGTTTaGTTGCAGGTCTATGATGAC +
Preference number: 4 (lower is better)
Translates to: NFSSSNGGLNLEANPLAKTFEGV*LQVYDD
Trigger: GTCATCATAGACCTGCAAGCAAACCCCCTCAAAGGT...TTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp CCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAACGCTCCCTGGACATTaGGTGCATATCTCGGGTAGC +
Preference number: 4 (lower is better)
Translates to: PMGTGICLHQGSAIFHLPTLPGH*VHISGS
Trigger: GCTACCCGAGATATGCACCCAATGTCCAGGGAGCGT...TGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR CCA 90 bp TGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGATTTTGCACGCTCCCTaGACATTGGGTGCATATCTC +
Preference number: 4 (lower is better)
Translates to: CLHQGSAIFHLPMAASTLILHAP*TLGAYL
Trigger: GAGATATGCACCCAATGTCCAGGGAGCGTGCAAAAT...CAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR CCA 90 bp CCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAGATCCAGCCCCAAGATaGTGCCCTTCTGATTCAGGC +
Preference number: 4 (lower is better)
Translates to: PMGTGICLHQGSAIFHLPDPAPR*CPSDSG
Trigger: GCCTGAATCAGAAGGGCACCATCTTGGGGCTGGATC...TGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp AGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGACAGTTGACATGTTGTaGCAGTATCAGAGTCTGGAG +
Preference number: 4 (lower is better)
Translates to: SAIFHLPMAASTLRRIHWTVDML*QYQSLE
Trigger: CTCCAGACTCTGATACTGCCACAACATGTCAACTGT...CCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp CCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCATGGAGACGGATAGAGTaGTGGCTCCCAGAATCCCGA +
Preference number: 4 (lower is better)
Translates to: PMGTGICLHQGSAIFHLPWRRIE*WLPESR
Trigger: TCGGGATTCTGGGAGCCACCACTCTATCCGTCTCCA...TGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp CTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTCTAGGAAGCAGAGCTAGGCAACAACACCAATaGGAACTGGTATTTGTCTAC +
Preference number: 4 (lower is better)
Translates to: LNLEANPLAKDAFLGSRARQQHQ*ELVFVY
Trigger: GTAGACAAATACCAGTTCCCATTGGTGTTGTTGCCT...AGCTCTGCTTCCTAGAAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGATTTTGCACGCTCCCTaGACATTGGGTGCATATCTG +
Preference number: 4 (lower is better)
Translates to: CLHQGSAIFHLPMAASTLILHAP*TLGAYL
Trigger: CAGATATGCACCCAATGTCCAGGGAGCGTGCAAAAT...CAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000405489.7
CDS-3UTR TCA 90 bp CAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCGAAGAACATAAGCAGTaGGAACGAGCCCTGGCGCAT +
Preference number: 4 (lower is better)
Translates to: QQHQWELVFVYTKGVQFFEEHKQ*ERALAH
Trigger: ATGCGCCAGGGCTCGTTCTCACTGCTTATGTTCTTC...GAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp GGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCTCCACTGGCGAAAGATaGCTTTCTAGGAAGCAGAGC +
Preference number: 4 (lower is better)
Translates to: GNWYLSTPRECNFSSSNGSTGER*LSRKQS
Trigger: GCTCTGCTTCCTAGAAAGGCATCTTTCGCCAGTGGA...GCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp ATAGGCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTCCAGAGAACAGTTCTaGAGATCCAGCCCCAAGATG +
Preference number: 4 (lower is better)
Translates to: IGNNTNGNWYLSTPRECNSREQF*RSSPKM
Trigger: CATCTTGGGGCTGGATCTCCAGAACTGTTCTCTGGA...ATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGCCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACTGCCTGATGAAAGTTTaGACCAGGGTCCTCCAGAGA +
Preference number: 4 (lower is better)
Translates to: YLSTPRECNFSSSNGGLNCLMKV*TRVLQR
Trigger: TCTCTGGAGGACCCTGGTCCAAACTTTCATCAGGCA...GTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGACAGTTGACATGTTGTaGCAGTATCAGAGTCTGGAG +
Preference number: 4 (lower is better)
Translates to: CLHQGSAIFHLPMAASTLTVDML*QYQSLE
Trigger: CTCCAGACTCTGATACTGCCACAACATGTCAACTGT...CAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCCTCAGGACACATTTCTaGGTCCCCAGTGTTATTGCA +
Preference number: 4 (lower is better)
Translates to: WYLSTPRECNFSSSNGGLLRTHF*VPSVIA
Trigger: TGCAATAACACTGGGGACCCAGAAATGTGTCCTGAG...GAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACAGTGAGAACGAGCCCTaGCGCATACACTTGTATCCA +
Preference number: 4 (lower is better)
Translates to: YLSTPRECNFSSSNGGLNSENEP*RIHLYP
Trigger: TGGATACAAGTGTATGCGCCAGGGCTCGTTCTCACT...GTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp AGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGAGGCAACAACACCAATaGGAACTGGTATTTGTCTAC +
Preference number: 4 (lower is better)
Translates to: SAIFHLPMAASTLRRIHWRQQHQ*ELVFVY
Trigger: GTAGACAAATACCAGTTCCCATTGGTGTTGTTGCCT...CCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp GGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCACCTTTGAGGGGGTTTaGTTGCAGGTCTATGATGAC +
Preference number: 4 (lower is better)
Translates to: GNWYLSTPRECNFSSSNGTFEGV*LQVYDD
Trigger: GTCATCATAGACCTGCAAGCAAACCCCCTCAAAGGT...GCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp CAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCTCCAGAGAACAGTTCTaGAGATCCAGCCCCAAGATG +
Preference number: 4 (lower is better)
Translates to: QQHQWELVFVYTKGVQFFSREQF*RSSPKM
Trigger: CATCTTGGGGCTGGATCTCCAGAACTGTTCTCTGGA...GAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCACACTGCAAAAGACCTaGACCATCAGGTACACAAGA +
Preference number: 4 (lower is better)
Translates to: WYLSTPRECNFSSSNGGLTLQKT*TIRYTR
Trigger: TCTTGTGTACCTGATGGTCCAGGTCTTTTGCAGTGT...GAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp CTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTCTAGGAAGCAGAGCTATACACTTGTATCCATaGAAACCATCAGCACAAACA +
Preference number: 4 (lower is better)
Translates to: LNLEANPLAKDAFLGSRAIHLYP*KPSAQT
Trigger: TGTTTGTGCTGATGGTTTCCATGGATACAAGTGTAT...AGCTCTGCTTCCTAGAAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp GCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTAGTGAGAACGAGCCCTaGCGCATACACTTGTATCCA +
Preference number: 4 (lower is better)
Translates to: ATTPMGTGICLHQGSAIFSENEP*RIHLYP
Trigger: TGGATACAAGTGTATGCGCCAGGGCTCGTTCTCACT...AAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp TTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTACTTTTGACAAATTTTaGACGCTCCCTGGACATTGG +
Preference number: 4 (lower is better)
Translates to: FVYTKGVQFFIFQWRPQPTFDKF*TLPGHW
Trigger: CCAATGTCCAGGGAGCGTGCAAAATTTGTCAAAAGT...AGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp CCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCATTGAGGGGGTTTGCTTaGAGGTCTATGATGACAGTG +
Preference number: 4 (lower is better)
Translates to: PMGTGICLHQGSAIFHLPLRGFA*RSMMTV
Trigger: CACTGTCATCATAGACCTGCAAGCAAACCCCCTCAA...TGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp GGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCTCAGCACAAACACACTaGAAAAGACCTGGACCATCA +
Preference number: 4 (lower is better)
Translates to: GNWYLSTPRECNFSSSNGSAQTH*KRPGPS
Trigger: TGATGGTCCAGGTCTTTTGCAGTGTGTTTGTGCTGA...GCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp AGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGTCTACACCAAGGGAGTaGAATTTTTCATCTTCCAAT +
Preference number: 4 (lower is better)
Translates to: SAIFHLPMAASTLRRIHWSTPRE*NFSSSN
Trigger: ATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGA...CCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp GGCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTACAGTTGACATGTTGTaGCAGTATCAGAGTCTGGAG +
Preference number: 4 (lower is better)
Translates to: GNNTNGNWYLSTPRECNFTVDML*QYQSLE
Trigger: CTCCAGACTCTGATACTGCCACAACATGTCAACTGT...AAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp GAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGATACACTTGTATCCATaGAAACCATCAGCACAAACA +
Preference number: 4 (lower is better)
Translates to: ECNFSSSNGGLNLEANPLIHLYP*KPSAQT
Trigger: TGTTTGTGCTGATGGTTTCCATGGATACAAGTGTAT...CAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp CCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAGCAGAGCTCCCTGACTaGGCTAAGATAGTTCAGATT +
Preference number: 4 (lower is better)
Translates to: PMGTGICLHQGSAIFHLPAELPD*AKIVQI
Trigger: AATCTGAACTATCTTAGCCCAGTCAGGGAGCTCTGC...TGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp ATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCAACACCAATGGGAACTaGTATTTGTCTACACCAAGG +
Preference number: 4 (lower is better)
Translates to: ICLHQGSAIFHLPMAASTNTNGN*YLSTPR
Trigger: CCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTT...GGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACACCAATGGGAACTaGTATTTGTCTACACCAAGG +
Preference number: 4 (lower is better)
Translates to: WYLSTPRECNFSSSNGGLNTNGN*YLSTPR
Trigger: CCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTT...GAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR TCA 90 bp TGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAGGTTCTTTTGCCCTTaGCAGATTTGGTTGTCTATA +
Preference number: 4 (lower is better)
Translates to: WYLSTPRECNFSSSNGGLRFFCP*QIWLSI
Trigger: TATAGACAACCAAATCTGTCAAGGGCAAAAGAACCT...GAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp ATAGGCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATACTTTTGACAAATTTTaGACGCTCCCTGGACATTGG +
Preference number: 4 (lower is better)
Translates to: IGNNTNGNWYLSTPRECNTFDKF*TLPGHW
Trigger: CCAATGTCCAGGGAGCGTGCAAAATTTGTCAAAAGT...ATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGCCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp CAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCTCAGCACAAACACACTaGAAAAGACCTGGACCATCA +
Preference number: 4 (lower is better)
Translates to: QQHQWELVFVYTKGVQFFSAQTH*KRPGPS
Trigger: TGATGGTCCAGGTCTTTTGCAGTGTGTTTGTGCTGA...GAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp AATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAATCTACACCAAGGGAGTaGAATTTTTCATCTTCCAAT +
Preference number: 4 (lower is better)
Translates to: NFSSSNGGLNLEANPLAKSTPRE*NFSSSN
Trigger: ATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGA...TTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp GCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTACACTGCAAAAGACCTaGACCATCAGGTACACAAGA +
Preference number: 4 (lower is better)
Translates to: ATTPMGTGICLHQGSAIFTLQKT*TIRYTR
Trigger: TCTTGTGTACCTGATGGTCCAGGTCTTTTGCAGTGT...AAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CCA 90 bp TGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCATACACTTGTATCCATaGAAACCATCAGCACAAACA +
Preference number: 4 (lower is better)
Translates to: WYLSTPRECNFSSSNGGLIHLYP*KPSAQT
Trigger: TGTTTGTGCTGATGGTTTCCATGGATACAAGTGTAT...GAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR TCA 90 bp CCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAAGGTTCTTTTGCCCTTaGCAGATTTGGTTGTCTATA +
Preference number: 4 (lower is better)
Translates to: PMGTGICLHQGSAIFHLPRFFCP*QIWLSI
Trigger: TATAGACAACCAAATCTGTCAAGGGCAAAAGAACCT...TGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR TCA 90 bp CAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCAGGTTCTTTTGCCCTTaGCAGATTTGGTTGTCTATA +
Preference number: 4 (lower is better)
Translates to: QQHQWELVFVYTKGVQFFRFFCP*QIWLSI
Trigger: TATAGACAACCAAATCTGTCAAGGGCAAAAGAACCT...GAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR GCA 90 bp TATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACTCTACACCAAGGGAGTaGAATTTTTCATCTTCCAAT +
Preference number: 4 (lower is better)
Translates to: YLSTPRECNFSSSNGGLNSTPRE*NFSSSN
Trigger: ATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGA...GTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS GCA 90 bp TTAGTGAAGGCCTCCCCCGTCGCCGCGCGGCTTCCCGGAGCCGACTaGAGACTCCCTCAGCCCGGTGTTCCCCGCGTCCGGACGCCGAGG +
Preference number: 5 (lower is better)
Translates to: LVKASPVAARLPGAD*RLPQPGVPRVRTPR
Trigger: CCTCGGCGTCCGGACGCGGGGAACACCGGGCTGAGGGAGTCTGCAGTCGGCTCCGGGAAGCCGCGCGGCGACGGGGGAGGCCTTCACTAA
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS CCA 90 bp GACGAAATCAGAACCGCAGGCCCGCCGAGGAGAAGGGGGAGCCGCTaGCGAGCGCGACGCACGGCTGGCCAGCGACCCTGCTTCAGCCCG +
Preference number: 5 (lower is better)
Translates to: DEIRTAGPPRRRGSR*RARRTAGQRPCFSP
Trigger: CGGGCTGAAGCAGGGTCGCTGGCCAGCCGTGCGTCGCGCTCGCCAGCGGCTCCCCCTTCTCCTCGGCGGGCCTGCGGTTCTGATTTCGTC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000405489.7
CDS CCA 90 bp CCCGCCGAGGAGAAGGGGGAGCCGCTGGCGAGCGCGACGCACGGCTaGCCAGCGACCCTGCTTCAGCCCGACCTCAAACTTGCTTCTGTA +
Preference number: 5 (lower is better)
Translates to: PAEEKGEPLASATHG*PATLLQPDLKLASV
Trigger: TACAGAAGCAAGTTTGAGGTCGGGCTGAAGCAGGGTCGCTGGCCAGCCGTGCGTCGCGCTCGCCAGCGGCTCCCCCTTCTCCTCGGCGGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000405489.7
CDS TCA 90 bp AGGGCGGCAGCCCAGGGCACCAGGGTCGTAAGACTACCCGGGTCGTaGGGCGCCATTTTCCGTTCCCTTGGTGCTCCGCTGCTCGCGCGA +
Preference number: 5 (lower is better)
Translates to: RAAAQGTRVVRLPGS*GAIFRSLGAPLLAR
Trigger: TCGCGCGAGCAGCGGAGCACCAAGGGAACGGAAAATGGCGCCTCACGACCCGGGTAGTCTTACGACCCTGGTGCCCTGGGCTGCCGCCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000484646.1
ENST00000611786.4
CDS GCA 90 bp GACGCACGGCTGGCCAGCGACCCTGCTTCAGCCCGACCTCAAACTTaGTTCTGTACCTCGGGTAGCGCCAGAGCCCTTTCCACGCCCAGA +
Preference number: 5 (lower is better)
Translates to: DARLASDPASARPQT*FCTSGSARALSTPR
Trigger: TCTGGGCGTGGAAAGGGCTCTGGCGCTACCCGAGGTACAGAAGCAAGTTTGAGGTCGGGCTGAAGCAGGGTCGCTGGCCAGCCGTGCGTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000405489.7
CDS-3UTR CAA 90 bp AGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACCATTTTCCGTTCCCTaGGTGCTCCGCTGCTCGCGC +
Preference number: 5 (lower is better)
Translates to: RECNFSSSNGGLNLEANPPFSVP*VLRCSR
Trigger: GCGCGAGCAGCGGAGCACCAAGGGAACGGAAAATGG...TGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR CAA 90 bp TGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGCCATTTTCCGTTCCCTaGGTGCTCCGCTGCTCGCGC +
Preference number: 5 (lower is better)
Translates to: CLHQGSAIFHLPMAASTLPFSVP*VLRCSR
Trigger: GCGCGAGCAGCGGAGCACCAAGGGAACGGAAAATGG...CAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS-3UTR CAA 90 bp TTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATATGGCGGCCTCAACCTaGAGGCGAATCCACTGGCGA +
Preference number: 5 (lower is better)
Translates to: FSSSNGGLNLEANPLAKDMAAST*RRIHWR
Trigger: TCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCAT...ATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp AATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAACACGCTCCCTGGACATaGGGTGCATATCTGGCTGGG +
Preference number: 5 (lower is better)
Translates to: NFSSSNGGLNLEANPLAKHAPWT*GAYLAG
Trigger: CCCAGCCAGATATGCACCCAATGTCCAGGGAGCGTG...TTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000405489.7
CDS-3UTR CAA 90 bp TTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATGTGCCTGATGAAAGTTaGGACCAGGGTCCTCCAGAG +
Preference number: 5 (lower is better)
Translates to: FSSSNGGLNLEANPLAKDVPDES*DQGPPE
Trigger: CTCTGGAGGACCCTGGTCCAAACTTTCATCAGGCAC...ATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp AGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCAAAGCCACGGAAGGTGTaGGCCAAGTCACCTTTGAGG +
Preference number: 5 (lower is better)
Translates to: RECNFSSSNGGLNLEANPKPRKV*AKSPLR
Trigger: CCTCAAAGGTGACTTGGCCAACACCTTCCGTGGCTT...TGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp CTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTCTAGGAAGCAGAGCTGTAGTTCATGAAGTCTaGGCTTTTCGGCGCTGGGTC +
Preference number: 5 (lower is better)
Translates to: LNLEANPLAKDAFLGSRAVVHEV*AFRRWV
Trigger: GACCCAGCGCCGAAAAGCCAAGACTTCATGAACTAC...AGCTCTGCTTCCTAGAAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp TGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGGTGCCTGATGAAAGTTaGGACCAGGGTCCTCCAGAG +
Preference number: 5 (lower is better)
Translates to: CLHQGSAIFHLPMAASTLVPDES*DQGPPE
Trigger: CTCTGGAGGACCCTGGTCCAAACTTTCATCAGGCAC...CAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp AATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAATTGGCCAAGTCACCTTaGAGGGGGTTTGCTTGCAGG +
Preference number: 5 (lower is better)
Translates to: NFSSSNGGLNLEANPLAKLAKSP*RGFACR
Trigger: CCTGCAAGCAAACCCCCTCAAAGGTGACTTGGCCAA...TTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp TTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTTGGCCAAGTCACCTTaGAGGGGGTTTGCTTGCAGG +
Preference number: 5 (lower is better)
Translates to: FVYTKGVQFFIFQWRPQPLAKSP*RGFACR
Trigger: CCTGCAAGCAAACCCCCTCAAAGGTGACTTGGCCAA...AGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp TGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAAGCCACGGAAGGTGTaGGCCAAGTCACCTTTGAGG +
Preference number: 5 (lower is better)
Translates to: WYLSTPRECNFSSSNGGLKPRKV*AKSPLR
Trigger: CCTCAAAGGTGACTTGGCCAACACCTTCCGTGGCTT...GAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp AGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCAGGGTCCCCAGTGTTATaGCAAAGGTTCTTTTGCCCT +
Preference number: 5 (lower is better)
Translates to: RECNFSSSNGGLNLEANPGSPVL*QRFFCP
Trigger: AGGGCAAAAGAACCTTTGCAATAACACTGGGGACCC...TGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp TGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGGTAGTTCATGAAGTCTaGGCTTTTCGGCGCTGGGTC +
Preference number: 5 (lower is better)
Translates to: CLHQGSAIFHLPMAASTLVVHEV*AFRRWV
Trigger: GACCCAGCGCCGAAAAGCCAAGACTTCATGAACTAC...CAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp CCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTaGAGGCGAATCCACTGGCGA +
Preference number: 5 (lower is better)
Translates to: PMGTGICLHQGSAIFHLPMAAST*RRIHWR
Trigger: TCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCAT...TGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp TTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATTTTGAGGGGGTTTGCTaGCAGGTCTATGATGACAGT +
Preference number: 5 (lower is better)
Translates to: FSSSNGGLNLEANPLAKDFEGVC*QVYDDS
Trigger: ACTGTCATCATAGACCTGCAAGCAAACCCCCTCAAA...ATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp ATAGGCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATAAGCCACGGAAGGTGTaGGCCAAGTCACCTTTGAGG +
Preference number: 5 (lower is better)
Translates to: IGNNTNGNWYLSTPRECNKPRKV*AKSPLR
Trigger: CCTCAAAGGTGACTTGGCCAACACCTTCCGTGGCTT...ATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGCCTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp GAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGAGGACAGTTGACATGTaGTGGCAGTATCAGAGTCTG +
Preference number: 5 (lower is better)
Translates to: ECNFSSSNGGLNLEANPLRTVDM*WQYQSL
Trigger: CAGACTCTGATACTGCCACAACATGTCAACTGTCCT...CAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp TTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATAGGACAGTTGACATGTaGTGGCAGTATCAGAGTCTG +
Preference number: 5 (lower is better)
Translates to: FSSSNGGLNLEANPLAKDRTVDM*WQYQSL
Trigger: CAGACTCTGATACTGCCACAACATGTCAACTGTCCT...ATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp AGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCAAGGACAGTTGACATGTaGTGGCAGTATCAGAGTCTG +
Preference number: 5 (lower is better)
Translates to: RECNFSSSNGGLNLEANPRTVDM*WQYQSL
Trigger: CAGACTCTGATACTGCCACAACATGTCAACTGTCCT...TGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp AATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAACCCTGGCGCATACACTaGTATCCATGGAAACCATCA +
Preference number: 5 (lower is better)
Translates to: NFSSSNGGLNLEANPLAKPWRIH*YPWKPS
Trigger: TGATGGTTTCCATGGATACAAGTGTATGCGCCAGGG...TTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp TGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGCCCTGGCGCATACACTaGTATCCATGGAAACCATCA +
Preference number: 5 (lower is better)
Translates to: CLHQGSAIFHLPMAASTLPWRIH*YPWKPS
Trigger: TGATGGTTTCCATGGATACAAGTGTATGCGCCAGGG...CAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp TCCAATGGCGGCCTCAACCTTGAGGCGAATCCACTGGCGAAAGATGCCTTTCTAAATAAAAGGCCACTTTaGACAAATTTTGCACGCTCC +
Preference number: 5 (lower is better)
Translates to: SNGGLNLEANPLAKDAFLNKRPL*TNFARS
Trigger: GGAGCGTGCAAAATTTGTCAAAAGTGGCCTTTTATT...TAGAAAGGCATCTTTCGCCAGTGGATTCGCCTCAAGGTTGAGGCCGCCATTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp CCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAGTGCCTGATGAAAGTTaGGACCAGGGTCCTCCAGAG +
Preference number: 5 (lower is better)
Translates to: PMGTGICLHQGSAIFHLPVPDES*DQGPPE
Trigger: CTCTGGAGGACCCTGGTCCAAACTTTCATCAGGCAC...TGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp CAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCTTGGCCAAGTCACCTTaGAGGGGGTTTGCTTGCAGG +
Preference number: 5 (lower is better)
Translates to: QQHQWELVFVYTKGVQFFLAKSP*RGFACR
Trigger: CCTGCAAGCAAACCCCCTCAAAGGTGACTTGGCCAA...GAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp ATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCGGGTCCCCAGTGTTATaGCAAAGGTTCTTTTGCCCT +
Preference number: 5 (lower is better)
Translates to: ICLHQGSAIFHLPMAASTGSPVL*QRFFCP
Trigger: AGGGCAAAAGAACCTTTGCAATAACACTGGGGACCC...GGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp ATAGGCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATGTAGTTCATGAAGTCTaGGCTTTTCGGCGCTGGGTC +
Preference number: 5 (lower is better)
Translates to: IGNNTNGNWYLSTPRECNVVHEV*AFRRWV
Trigger: GACCCAGCGCCGAAAAGCCAAGACTTCATGAACTAC...ATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGCCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS GCA 90 bp TGGCGCATACACTTGTATCCATGGAAACCATCAGCACAAACACACTaGAAAAGACCTGGACCATCAGGTACACAAGATCCATTCTCAGGA +
Preference number: 5 (lower is better)
Translates to: WRIHLYPWKPSAQTH*KRPGPSGTQDPFSG
Trigger: TCCTGAGAATGGATCTTGTGTACCTGATGGTCCAGGTCTTTTGCAGTGTGTTTGTGCTGATGGTTTCCATGGATACAAGTGTATGCGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000472515.1
ENST00000611786.4
CDS-3UTR CAA 90 bp TTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTTTGAGGGGGTTTGCTaGCAGGTCTATGATGACAGT +
Preference number: 5 (lower is better)
Translates to: FVYTKGVQFFIFQWRPQPFEGVC*QVYDDS
Trigger: ACTGTCATCATAGACCTGCAAGCAAACCCCCTCAAA...AGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp ATAGGCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATGGGTCCCCAGTGTTATaGCAAAGGTTCTTTTGCCCT +
Preference number: 5 (lower is better)
Translates to: IGNNTNGNWYLSTPRECNGSPVL*QRFFCP
Trigger: AGGGCAAAAGAACCTTTGCAATAACACTGGGGACCC...ATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGCCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp AGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCCAAATAAAAGGCCACTTTaGACAAATTTTGCACGCTCC +
Preference number: 5 (lower is better)
Translates to: RECNFSSSNGGLNLEANPNKRPL*TNFARS
Trigger: GGAGCGTGCAAAATTTGTCAAAAGTGGCCTTTTATT...TGGATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp GGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCTTTGAGGGGGTTTGCTaGCAGGTCTATGATGACAGT +
Preference number: 5 (lower is better)
Translates to: GNWYLSTPRECNFSSSNGFEGVC*QVYDDS
Trigger: ACTGTCATCATAGACCTGCAAGCAAACCCCCTCAAA...GCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp CAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAGGCGAATCATTGCAAAGGTTCTTTaGCCCTTGACAGATTTGGTT +
Preference number: 5 (lower is better)
Translates to: QGSAIFHLPMAASTLRRIIAKVL*PLTDLV
Trigger: AACCAAATCTGTCAAGGGCAAAAGAACCTTTGCAAT...GATTCGCCTCAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp TGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGAATAAAAGGCCACTTTaGACAAATTTTGCACGCTCC +
Preference number: 5 (lower is better)
Translates to: CLHQGSAIFHLPMAASTLNKRPL*TNFARS
Trigger: GGAGCGTGCAAAATTTGTCAAAAGTGGCCTTTTATT...CAAGGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp ATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACCTTGCCCTTGACAGATTaGGTTGTCTATATAAGAGGT +
Preference number: 5 (lower is better)
Translates to: ICLHQGSAIFHLPMAASTLPLTD*VVYIRG
Trigger: ACCTCTTATATAGACAACCAAATCTGTCAAGGGCAA...GGTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp TGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAAGGTTCTTTTGCCCTaGACAGATTTGGTTGTCTAT +
Preference number: 5 (lower is better)
Translates to: WYLSTPRECNFSSSNGGLKVLLP*TDLVVY
Trigger: ATAGACAACCAAATCTGTCAAGGGCAAAAGAACCTT...GAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS CCA 90 bp ACCTGGACCATCAGGTACACAAGATCCATTCTCAGGACACATTTCTaGAGGCCAGAGAGAAATAGAGAACATCACTTTATCCATTTCATT +
Preference number: 5 (lower is better)
Translates to: TWTIRYTRSILRTHF*RPERNREHHFIHFI
Trigger: AATGAAATGGATAAAGTGATGTTCTCTATTTCTCTCTGGCCTCCAGAAATGTGTCCTGAGAATGGATCTTGTGTACCTGATGGTCCAGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000472515.1
CDS-3UTR CAA 90 bp GGCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTTGCCCTTGACAGATTaGGTTGTCTATATAAGAGGT +
Preference number: 5 (lower is better)
Translates to: GNNTNGNWYLSTPRECNFLPLTD*VVYIRG
Trigger: ACCTCTTATATAGACAACCAAATCTGTCAAGGGCAA...AAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGCC
42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp TATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAATGGCGGCCTCAACAAGGTTCTTTTGCCCTaGACAGATTTGGTTGTCTAT +
Preference number: 5 (lower is better)
Translates to: YLSTPRECNFSSSNGGLNKVLLP*TDLVVY
Trigger: ATAGACAACCAAATCTGTCAAGGGCAAAAGAACCTT...GTTGAGGCCGCCATTGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp GGCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTATTGCAAAGGTTCTTTaGCCCTTGACAGATTTGGTT +
Preference number: 5 (lower is better)
Translates to: GNNTNGNWYLSTPRECNFIAKVL*PLTDLV
Trigger: AACCAAATCTGTCAAGGGCAAAAGAACCTTTGCAAT...AAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp CCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCATTGCCCTTGACAGATTaGGTTGTCTATATAAGAGGT +
Preference number: 5 (lower is better)
Translates to: PMGTGICLHQGSAIFHLPLPLTD*VVYIRG
Trigger: ACCTCTTATATAGACAACCAAATCTGTCAAGGGCAA...TGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp CCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTCATCTTCCAAAGGTTCTTTTGCCCTaGACAGATTTGGTTGTCTAT +
Preference number: 5 (lower is better)
Translates to: PMGTGICLHQGSAIFHLPKVLLP*TDLVVY
Trigger: ATAGACAACCAAATCTGTCAAGGGCAAAAGAACCTT...TGGAAGATGAAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS-3UTR CAA 90 bp GCAACAACACCAATGGGAACTGGTATTTGTCTACACCAAGGGAGTGCAATTTTTATTGCAAAGGTTCTTTaGCCCTTGACAGATTTGGTT +
Preference number: 5 (lower is better)
Translates to: ATTPMGTGICLHQGSAIFIAKVL*PLTDLV
Trigger: AACCAAATCTGTCAAGGGCAAAAGAACCTTTGCAAT...AAAAATTGCACTCCCTTGGTGTAGACAAATACCAGTTCCCATTGGTGTTGTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS GCA 72 bp GCCTCCCCCGTCGCCGCGCGGCTTCCCGGAGCCGACTaGAGACTCCCTCAGCCCGGTGTTCCCCGCGTCCGG +
Preference number: 6 (lower is better)
Translates to: ASPVAARLPGAD*RLPQPGVPRVR
Trigger: CCGGACGCGGGGAACACCGGGCTGAGGGAGTCTGCAGTCGGCTCCGGGAAGCCGCGCGGCGACGGGGGAGGC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS CCA 72 bp AGAACCGCAGGCCCGCCGAGGAGAAGGGGGAGCCGCTaGCGAGCGCGACGCACGGCTGGCCAGCGACCCTGC +
Preference number: 6 (lower is better)
Translates to: RTAGPPRRRGSR*RARRTAGQRPC
Trigger: GCAGGGTCGCTGGCCAGCCGTGCGTCGCGCTCGCCAGCGGCTCCCCCTTCTCCTCGGCGGGCCTGCGGTTCT
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000405489.7
CDS CCA 72 bp GAGAAGGGGGAGCCGCTGGCGAGCGCGACGCACGGCTaGCCAGCGACCCTGCTTCAGCCCGACCTCAAACTT +
Preference number: 6 (lower is better)
Translates to: EKGEPLASATHG*PATLLQPDLKL
Trigger: AAGTTTGAGGTCGGGCTGAAGCAGGGTCGCTGGCCAGCCGTGCGTCGCGCTCGCCAGCGGCTCCCCCTTCTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000405489.7
CDS GCA 72 bp CGCTGGCGAGCGCGACGCACGGCTGGCCAGCGACCCTaGTTCAGCCCGACCTCAAACTTGCTTCTGTACCTC +
Preference number: 6 (lower is better)
Translates to: RWRARRTAGQRP*FSPTSNLLLYL
Trigger: GAGGTACAGAAGCAAGTTTGAGGTCGGGCTGAAGCAGGGTCGCTGGCCAGCCGTGCGTCGCGCTCGCCAGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000405489.7
CDS TCA 72 bp GCCCAGGGCACCAGGGTCGTAAGACTACCCGGGTCGTaGGGCGCCATTTTCCGTTCCCTTGGTGCTCCGCTG +
Preference number: 6 (lower is better)
Translates to: AQGTRVVRLPGS*GAIFRSLGAPL
Trigger: CAGCGGAGCACCAAGGGAACGGAAAATGGCGCCTCACGACCCGGGTAGTCTTACGACCCTGGTGCCCTGGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000484646.1
ENST00000611786.4
CDS GCA 72 bp GCTTTTCCTGCTCGTGGAGCTCTGCGCTGGTCTTCATaGGCCCTAGCCCTCTTTCGGGGATACTGGCCGACC +
Preference number: 6 (lower is better)
Translates to: AFPARGALRWSS*ALALFRGYWPT
Trigger: GGTCGGCCAGTATCCCCGAAAGAGGGCTAGGGCGCATGAAGACCAGCGCAGAGCTCCACGAGCAGGAAAAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000380171.8
ENST00000611786.4
CDS GCA 72 bp CTGGCCAGCGACCCTGCTTCAGCCCGACCTCAAACTTaGTTCTGTACCTCGGGTAGCGCCAGAGCCCTTTCC +
Preference number: 6 (lower is better)
Translates to: LASDPASARPQT*FCTSGSARALS
Trigger: GGAAAGGGCTCTGGCGCTACCCGAGGTACAGAAGCAAGTTTGAGGTCGGGCTGAAGCAGGGTCGCTGGCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000405489.7
CDS CCA 72 bp TCTTGGCTTTTCGGCGCTGGGTCGCCCAAAGCAGAATaGAGACGGATAGAGTGGTGGCTCCCAGAATCCCGA +
Preference number: 6 (lower is better)
Translates to: SWLFGAGSPKAE*RRIEWWLPESR
Trigger: TCGGGATTCTGGGAGCCACCACTCTATCCGTCTCCATTCTGCTTTGGGCGACCCAGCGCCGAAAAGCCAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000472515.1
ENST00000611786.4
CDS TCA 72 bp CAGTTCTGGAGATCCAGCCCCAAGATGGTGCCCTTCTaGTTCAGGCAGCAACGGGCATGCAGCATTAGCTCT +
Preference number: 6 (lower is better)
Translates to: QFWRSSPKMVPF*FRQQRACSISS
Trigger: AGAGCTAATGCTGCATGCCCGTTGCTGCCTGAATCAGAAGGGCACCATCTTGGGGCTGGATCTCCAGAACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000419744.1
ENST00000491220.1
ENST00000611786.4
CDS GCA 72 bp ACGGAAGGTGTTGGCCAAGTCACCTTTGAGGGGGTTTaGTTGCAGGTCTATGATGACAGTGGTATGTGCCTG +
Preference number: 6 (lower is better)
Translates to: TEGVGQVTFEGV*LQVYDDSGMCL
Trigger: CAGGCACATACCACTGTCATCATAGACCTGCAAGCAAACCCCCTCAAAGGTGACTTGGCCAACACCTTCCGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000419744.1
ENST00000611786.4
CDS GCA 72 bp GGGGTTTGCTTGCAGGTCTATGATGACAGTGGTATGTaGCTGATGAAAGTTTGGACCAGGGTCCTCCAGAGA +
Preference number: 6 (lower is better)
Translates to: GVCLQVYDDSGM*LMKVWTRVLQR
Trigger: TCTCTGGAGGACCCTGGTCCAAACTTTCATCAGGCACATACCACTGTCATCATAGACCTGCAAGCAAACCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000419744.1
ENST00000611786.4
CDS CCA 72 bp ACCTATGTAGTTCATGAAGTCTTGGCTTTTCGGCGCTaGGTCGCCCAAAGCAGAATGGAGACGGATAGAGTG +
Preference number: 6 (lower is better)
Translates to: TYVVHEVLAFRR*VAQSRMETDRV
Trigger: CACTCTATCCGTCTCCATTCTGCTTTGGGCGACCCAGCGCCGAAAAGCCAAGACTTCATGAACTACATAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000472515.1
ENST00000611786.4
CDS GCA 72 bp GAGGTACCTAACTACTTACATGATGACAGTGGTATGTaGCTGATGAAAGTTTGGACCAGGGTCCTCCAGAGA +
Preference number: 6 (lower is better)
Translates to: EVPNYLHDDSGM*LMKVWTRVLQR
Trigger: TCTCTGGAGGACCCTGGTCCAAACTTTCATCAGGCACATACCACTGTCATCATGTAAGTAGTTAGGTACCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000491220.1
CDS CAA 72 bp ATTCCAGGCATTAATTCCTCCAGGACAGTTGACATGTaGTGGCAGTATCAGAGTCTGGAGCTGAGTAAAGCC +
Preference number: 6 (lower is better)
Translates to: IPGINSSRTVDM*WQYQSLELSKA
Trigger: GGCTTTACTCAGCTCCAGACTCTGATACTGCCACAACATGTCAACTGTCCTGGAGGAATTAATGCCTGGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS CCA 72 bp GCCACTTTTGACAAATTTTGCACGCTCCCTGGACATTaGGTGCATATCTGCAGAAGAGAAAGAAACATTAGA +
Preference number: 6 (lower is better)
Translates to: ATFDKFCTLPGH*VHICRRERNIR
Trigger: TCTAATGTTTCTTTCTCTTCTGCAGATATGCACCCAATGTCCAGGGAGCGTGCAAAATTTGTCAAAAGTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000419744.1
CDS CAA 90 bp ACACATTTCTGGGTCCCCAGTGTTATTGCAAAGGTTCTTTTGCCCTaGACAGATTTGGTTGTCTATATAAGAGGTGATAGTATTCCAGGC +
Preference number: 6 (lower is better)
Translates to: THFWVPSVIAKVLLP*TDLVVYIRGDSIPG
Trigger: GCCTGGAATACTATCACCTCTTATATAGACAACCAAATCTGTCAAGGGCAAAAGAACCTTTGCAATAACACTGGGGACCCAGAAATGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS CAA 90 bp CTCAGGACACATTTCTGGGTCCCCAGTGTTATTGCAAAGGTTCTTTaGCCCTTGACAGATTTGGTTGTCTATATAAGAGGTGATAGTATT +
Preference number: 6 (lower is better)
Translates to: LRTHFWVPSVIAKVL*PLTDLVVYIRGDSI
Trigger: AATACTATCACCTCTTATATAGACAACCAAATCTGTCAAGGGCAAAAGAACCTTTGCAATAACACTGGGGACCCAGAAATGTGTCCTGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000380171.8
ENST00000405489.7
ENST00000611786.4
CDS TCA 72 bp CAGTACCAGATATCGCACAGGGAAGGTCCTCATCTCTaGAGATCACTATTCGAACTTATTTATTATGCTTTC +
Preference number: 6 (lower is better)
Translates to: QYQISHREGPHL*RSLFELIYYAF
Trigger: GAAAGCATAATAAATAAGTTCGAATAGTGATCTTCAGAGATGAGGACCTTCCCTGTGCGATATCTGGTACTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000419744.1