Pregenerated sensors for APOA1 (Homo sapiens)
Ensembl gene IDs: ENSG00000118137Ensembl transcript IDs: ENST00000236850.5, ENST00000359492.6, ENST00000375320.5, ENST00000375323.5, ENST00000375329.6
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGGCCAAGCGCTGGCGCAGCTCGTCGCTGTAGGGGGCCAGATGCGTaGGCAGCGCGTCCACATGGGCGCGCGCGCGGTCGCGCATCTCCT | + |
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Preference number: 5 (lower is better) Translates to: RPSAGAARRCRGPDA*AARPHGRARGRASP Trigger: AGGAGATGCGCGACCGCGCGCGCGCCCATGTGGACGCGCTGCGCACGCATCTGGCCCCCTACAGCGACGAGCTGCGCCAGCGCTTGGCCG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS GCA 90 bp | AGGTCCTCGAGCGCGGGCTTGGCCTTCTCGCTGAGCGTGCTCAGATaGTCGGTGGCCTTGGCGTGGTACTCGGCCAGTCTGGCGCCGCCG | + |
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Preference number: 5 (lower is better) Translates to: RSSSAGLAFSLSVLR*SVALAWYSASLAPP Trigger: CGGCGGCGCCAGACTGGCCGAGTACCACGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAGCCCGCGCTCGAGGACCT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS TCA 90 bp | GCAGGCCTTGGCGGAGGTCCTCGAGCGCGGGCTTGGCCTTCTCGCTaGGCGTGCTCAGATGCTCGGTGGCCTTGGCGTGGTACTCGGCCA | + |
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Preference number: 5 (lower is better) Translates to: AGLGGGPRARAWPSR*ACSDARWPWRGTRP Trigger: TGGCCGAGTACCACGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAGCCCGCGCTCGAGGACCTCCGCCAAGGCCTGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS GCA 90 bp | CTCTTGCAGCTCGTGCAGCTTCTGGCGCGCGCCCTCTTGGAGCTCTaGGCGCAGCGGCTCCACCTTCTGGCGGTAGAGCTCCATCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: LLQLVQLLARALLEL*AQRLHLLAVELHLL Trigger: GAGGAGATGGAGCTCTACCGCCAGAAGGTGGAGCCGCTGCGCGCAGAGCTCCAAGAGGGCGCGCGCCAGAAGCTGCACGAGCTGCAAGAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS CCA 90 bp | CTCAGGAAGCTGACCTTGAAGCTCTCCAGCACGGGCAGCAGGCCTTaGCGGAGGTCCTCGAGCGCGGGCTTGGCCTTCTCGCTGAGCGTG | + |
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Preference number: 5 (lower is better) Translates to: LRKLTLKLSSTGSRP*RRSSSAGLAFSLSV Trigger: CACGCTCAGCGAGAAGGCCAAGCCCGCGCTCGAGGACCTCCGCCAAGGCCTGCTGCCCGTGCTGGAGAGCTTCAAGGTCAGCTTCCTGAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS CCA 90 bp | TTGGCCTTCTCGCTGAGCGTGCTCAGATGCTCGGTGGCCTTGGCGTaGTACTCGGCCAGTCTGGCGCCGCCGTTCTCCTTGAGAGCCTCA | + |
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Preference number: 5 (lower is better) Translates to: LAFSLSVLRCSVALA*YSASLAPPFSLRAS Trigger: TGAGGCTCTCAAGGAGAACGGCGGCGCCAGACTGGCCGAGTACCACGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAA 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS CCA 90 bp | CAAGGTCAGCACCGCAGCTTTCATCCTGAAGGGCCGTGGGGGACCTaGAGGAGAAGAAGGGCCTGGCTGAGTGGGGTGCCTTCAGCATGC | + |
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Preference number: 5 (lower is better) Translates to: QGQHRSFHPEGPWGT*RRRRAWLSGVPSAC Trigger: GCATGCTGAAGGCACCCCACTCAGCCAGGCCCTTCTTCTCCTCCAGGTCCCCCACGGCCCTTCAGGATGAAAGCTGCGGTGCTGACCTTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000375323.5 ENST00000375329.6 |
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| CDS TCA 90 bp | AGGCGGAGCCTTCAAACTGGGACACATAGTCTCTGCCGCTGTCTTTaGGCACATCCACGTACACAGTGGCCAGGTCCTTCACTCGATCCC | + |
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Preference number: 5 (lower is better) Translates to: RRSLQTGTHSLCRCL*AHPRTQWPGPSLDP Trigger: GGGATCGAGTGAAGGACCTGGCCACTGTGTACGTGGATGTGCTCAAAGACAGCGGCAGAGACTATGTGTCCCAGTTTGAAGGCTCCGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 |
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| CDS GCA 72 bp | GCTGGCGCAGCTCGTCGCTGTAGGGGGCCAGATGCGTaGGCAGCGCGTCCACATGGGCGCGCGCGCGGTCGC | + |
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Preference number: 6 (lower is better) Translates to: AGAARRCRGPDA*AARPHGRARGR Trigger: GCGACCGCGCGCGCGCCCATGTGGACGCGCTGCGCACGCATCTGGCCCCCTACAGCGACGAGCTGCGCCAGC 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS CAA 72 bp | GCGTGGTACTCGGCCAGTCTGGCGCCGCCGTTCTCCTaGAGAGCCTCAAGGCGCGCGGCCAAGCGCTGGCGC | + |
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Preference number: 6 (lower is better) Translates to: AWYSASLAPPFS*RASRRAAKRWR Trigger: GCGCCAGCGCTTGGCCGCGCGCCTTGAGGCTCTCAAGGAGAACGGCGGCGCCAGACTGGCCGAGTACCACGC 72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS TCA 72 bp | CGTGGTACTCGGCCAGTCTGGCGCCGCCGTTCTCCTTaGGAGCCTCAAGGCGCGCGGCCAAGCGCTGGCGCA | + |
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Preference number: 6 (lower is better) Translates to: RGTRPVWRRRSP*EPQGARPSAGA Trigger: TGCGCCAGCGCTTGGCCGCGCGCCTTGAGGCTCTCAAGGAGAACGGCGGCGCCAGACTGGCCGAGTACCACG 71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS CAA 90 bp | TCCAGCACGGGCAGCAGGCCTTGGCGGAGGTCCTCGAGCGCGGGCTaGGCCTTCTCGCTGAGCGTGCTCAGATGCTCGGTGGCCTTGGCG | + |
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Preference number: 6 (lower is better) Translates to: SSTGSRPWRRSSSAG*AFSLSVLRCSVALA Trigger: CGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAGCCCGCGCTCGAGGACCTCCGCCAAGGCCTGCTGCCCGTGCTGGA 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS TCA 72 bp | GGCGGAGGTCCTCGAGCGCGGGCTTGGCCTTCTCGCTaGGCGTGCTCAGATGCTCGGTGGCCTTGGCGTGGT | + |
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Preference number: 6 (lower is better) Translates to: GGGPRARAWPSR*ACSDARWPWRG Trigger: ACCACGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAGCCCGCGCTCGAGGACCTCCGCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS GCA 72 bp | CTCGTGCAGCTTCTGGCGCGCGCCCTCTTGGAGCTCTaGGCGCAGCGGCTCCACCTTCTGGCGGTAGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: LVQLLARALLEL*AQRLHLLAVEL Trigger: GAGCTCTACCGCCAGAAGGTGGAGCCGCTGCGCGCAGAGCTCCAAGAGGGCGCGCGCCAGAAGCTGCACGAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS CCA 72 bp | TCTTGCAGCTCGTGCAGCTTCTGGCGCGCGCCCTCTTaGAGCTCTGCGCGCAGCGGCTCCACCTTCTGGCGG | + |
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Preference number: 6 (lower is better) Translates to: SCSSCSFWRAPS*SSARSGSTFWR Trigger: CCGCCAGAAGGTGGAGCCGCTGCGCGCAGAGCTCCAAGAGGGCGCGCGCCAGAAGCTGCACGAGCTGCAAGA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS CAA 72 bp | CTCTTGCAGCTCGTGCAGCTTCTGGCGCGCGCCCTCTaGGAGCTCTGCGCGCAGCGGCTCCACCTTCTGGCG | + |
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Preference number: 6 (lower is better) Translates to: LLQLVQLLARAL*ELCAQRLHLLA Trigger: CGCCAGAAGGTGGAGCCGCTGCGCGCAGAGCTCCAAGAGGGCGCGCGCCAGAAGCTGCACGAGCTGCAAGAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS CAA 72 bp | GGCAGCAGGCCTTGGCGGAGGTCCTCGAGCGCGGGCTaGGCCTTCTCGCTGAGCGTGCTCAGATGCTCGGTG | + |
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Preference number: 6 (lower is better) Translates to: GSRPWRRSSSAG*AFSLSVLRCSV Trigger: CACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAGCCCGCGCTCGAGGACCTCCGCCAAGGCCTGCTGCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS CCA 72 bp | CTGACCTTGAAGCTCTCCAGCACGGGCAGCAGGCCTTaGCGGAGGTCCTCGAGCGCGGGCTTGGCCTTCTCG | + |
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Preference number: 6 (lower is better) Translates to: LTLKLSSTGSRP*RRSSSAGLAFS Trigger: CGAGAAGGCCAAGCCCGCGCTCGAGGACCTCCGCCAAGGCCTGCTGCCCGTGCTGGAGAGCTTCAAGGTCAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS CAA 90 bp | GCGGGCTTGGCCTTCTCGCTGAGCGTGCTCAGATGCTCGGTGGCCTaGGCGTGGTACTCGGCCAGTCTGGCGCCGCCGTTCTCCTTGAGA | + |
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Preference number: 6 (lower is better) Translates to: AGLAFSLSVLRCSVA*AWYSASLAPPFSLR Trigger: TCTCAAGGAGAACGGCGGCGCCAGACTGGCCGAGTACCACGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAGCCCGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS CAA 90 bp | GCTCAGGAAGCTGACCTTGAAGCTCTCCAGCACGGGCAGCAGGCCTaGGCGGAGGTCCTCGAGCGCGGGCTTGGCCTTCTCGCTGAGCGT | + |
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Preference number: 6 (lower is better) Translates to: AQEADLEALQHGQQA*AEVLERGLGLLAER Trigger: ACGCTCAGCGAGAAGGCCAAGCCCGCGCTCGAGGACCTCCGCCAAGGCCTGCTGCCCGTGCTGGAGAGCTTCAAGGTCAGCTTCCTGAGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS GCA 72 bp | AGCGCGGGCTTGGCCTTCTCGCTGAGCGTGCTCAGATaGTCGGTGGCCTTGGCGTGGTACTCGGCCAGTCTG | + |
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Preference number: 6 (lower is better) Translates to: SAGLAFSLSVLR*SVALAWYSASL Trigger: CAGACTGGCCGAGTACCACGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAGCCCGCGCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS CCA 72 bp | TCGCTGAGCGTGCTCAGATGCTCGGTGGCCTTGGCGTaGTACTCGGCCAGTCTGGCGCCGCCGTTCTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: SLSVLRCSVALA*YSASLAPPFSL Trigger: CAAGGAGAACGGCGGCGCCAGACTGGCCGAGTACCACGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGA 67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS TCA 72 bp | CCTGGGTCACAGGGCCGAGCTGTTCGCGCAGCTTGCTaGAGGTGGAGGTCACGCTGTCCCAGTTGTCAAGGA | + |
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Preference number: 6 (lower is better) Translates to: PGSQGRAVRAAC*RWRSRCPSCQG Trigger: TCCTTGACAACTGGGACAGCGTGACCTCCACCTTCAGCAAGCTGCGCGAACAGCTCGGCCCTGTGACCCAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS CAA 90 bp | TTGAGCTTCTTAGTGTACTCCTCGAGAGCGCTCAGGAAGCTGACCTaGAAGCTCTCCAGCACGGGCAGCAGGCCTTGGCGGAGGTCCTCG | + |
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Preference number: 6 (lower is better) Translates to: LSFLVYSSRALRKLT*KLSSTGSRPWRRSS Trigger: CGAGGACCTCCGCCAAGGCCTGCTGCCCGTGCTGGAGAGCTTCAAGGTCAGCTTCCTGAGCGCTCTCGAGGAGTACACTAAGAAGCTCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 ENST00000375329.6 |
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| CDS TCA 72 bp | CTTCAAACTGGGACACATAGTCTCTGCCGCTGTCTTTaGGCACATCCACGTACACAGTGGCCAGGTCCTTCA | + |
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Preference number: 6 (lower is better) Translates to: LQTGTHSLCRCL*AHPRTQWPGPS Trigger: TGAAGGACCTGGCCACTGTGTACGTGGATGTGCTCAAAGACAGCGGCAGAGACTATGTGTCCCAGTTTGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000236850.5 ENST00000359492.6 ENST00000375320.5 ENST00000375323.5 |
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