Pregenerated sensors for API5 (Homo sapiens)
Ensembl gene IDs: ENSG00000166181Ensembl transcript IDs: ENST00000455725.6, ENST00000530300.1, ENST00000534600.5, ENST00000534695.5
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGTTTAATGTTGCATGTTCAATACAGTCAGCCCAGAAGGGTGAATaGGAGAGGAATGGGATAAATCATTTCCTCAACAGCCCTAGTTCT | + |
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Preference number: 1 (lower is better) Translates to: LFNVACSIQSAQKGE*ERNGINHFLNSPSS Trigger: AGAACTAGGGCTGTTGAGGAAATGATTTATCCCATTCCTCTCTCATTCACCCTTCTGGGCTGACTGTATTGAACATGCAACATTAAACAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534600.5 |
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| 3UTR-3UTR CAA 90 bp | TTTAAGTGCTTACTGTTTAATGTTGCATGTTCAATACAGTCAGCCCAGAAGGGTAATTCAGAAAAGTCATaGGATAGAACCATGACACTG | + |
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Preference number: 3 (lower is better) Translates to: FKCLLFNVACSIQSAQKGNSEKS*DRTMTL Trigger: CAGTGTCATGGTTCTATCCAATGACTTTTCTGAATT...ACCCTTCTGGGCTGACTGTATTGAACATGCAACATTAAACAGTAAGCACTTAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534600.5 |
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| CDS-3UTR GCA 90 bp | AAGTGCTTACTGTTTAATGTTGCATGTTCAATACAGTCAGCCCAGAAGGGTGAAGCAGAGTCATCTGTCTaGAAAAGTTGCGTTAGTATA | + |
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Preference number: 4 (lower is better) Translates to: KCLLFNVACSIQSAQKGEAESSV*KSCVSI Trigger: TATACTAACGCAACTTTTGCAGACAGATGACTCTGC...TTCACCCTTCTGGGCTGACTGTATTGAACATGCAACATTAAACAGTAAGCACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534600.5 |
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| CDS-3UTR CAA 90 bp | AAGTGCTTACTGTTTAATGTTGCATGTTCAATACAGTCAGCCCAGAAGGGTGAAAATTCAGAAAAGTCATaGGATAGAACCATGACACTG | + |
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Preference number: 5 (lower is better) Translates to: KCLLFNVACSIQSAQKGENSEKS*DRTMTL Trigger: CAGTGTCATGGTTCTATCCAATGACTTTTCTGAATT...TTCACCCTTCTGGGCTGACTGTATTGAACATGCAACATTAAACAGTAAGCACTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000534600.5 |
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| CDS TCA 90 bp | CTCCAATTGTATCAGCCACATACAGAAACATCTGAAAGATTGCTATaGAGTGTCATTCATAAACTTACAGATACATCTTCATCCTCACAG | + |
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Preference number: 5 (lower is better) Translates to: LQLYQPHTETSERLL*SVIHKLTDTSSSSQ Trigger: CTGTGAGGATGAAGATGTATCTGTAAGTTTATGAATGACACTTCATAGCAATCTTTCAGATGTTTCTGTATGTGGCTGATACAATTGGAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000530300.1 |
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| CDS GCA 90 bp | TGCTACTCCAATTGTATCAGCCACATACAGAAACATCTGAAAGATTaGTATGAAGTGTCATTCATAAACTTACAGATACATCTTCATCCT | + |
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Preference number: 5 (lower is better) Translates to: CYSNCISHIQKHLKD*YEVSFINLQIHLHP Trigger: AGGATGAAGATGTATCTGTAAGTTTATGAATGACACTTCATAGCAATCTTTCAGATGTTTCTGTATGTGGCTGATACAATTGGAGTAGCA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000530300.1 |
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| CDS GCA 72 bp | CACTACCCGCACTATTACACCTCCAGCTGCCGCCAGTaGAGCCGCCAGTCACCGCGCACAGCGCGGCTGCGC | + |
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Preference number: 6 (lower is better) Translates to: HYPHYYTSSCRQ*SRQSPRTARLR Trigger: GCGCAGCCGCGCTGTGCGCGGTGACTGGCGGCTGCACTGGCGGCAGCTGGAGGTGTAATAGTGCGGGTAGTG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534695.5 |
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| CDS CAA 90 bp | CTTTATGCTTCCCAATTCCGTTCTCCCTCCATCTTTGTTTCATTTTaGAGTTGGGGGAGATGGATGAGTCTGGCCCACTTGCTCCGTGGC | + |
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Preference number: 6 (lower is better) Translates to: LYASQFRSPSIFVSF*SWGRWMSLAHLLRG Trigger: GCCACGGAGCAAGTGGGCCAGACTCATCCATCTCCCCCAACTCAAAAATGAAACAAAGATGGAGGGAGAACGGAATTGGGAAGCATAAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000455725.6 |
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| CDS CCA 72 bp | TTCCGTTCTCCCTCCATCTTTGTTTCATTTTTGAGTTaGGGGAGATGGATGAGTCTGGCCCACTTGCTCCGT | + |
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Preference number: 6 (lower is better) Translates to: FRSPSIFVSFLS*GRWMSLAHLLR Trigger: ACGGAGCAAGTGGGCCAGACTCATCCATCTCCCCCAACTCAAAAATGAAACAAAGATGGAGGGAGAACGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000455725.6 |
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| CDS CAA 72 bp | ATTCCGTTCTCCCTCCATCTTTGTTTCATTTTTGAGTaGGGGGAGATGGATGAGTCTGGCCCACTTGCTCCG | + |
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Preference number: 6 (lower is better) Translates to: IPFSLHLCFIFE*GEMDESGPLAP Trigger: CGGAGCAAGTGGGCCAGACTCATCCATCTCCCCCAACTCAAAAATGAAACAAAGATGGAGGGAGAACGGAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000455725.6 |
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| CDS CAA 72 bp | TCCCAATTCCGTTCTCCCTCCATCTTTGTTTCATTTTaGAGTTGGGGGAGATGGATGAGTCTGGCCCACTTG | + |
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Preference number: 6 (lower is better) Translates to: SQFRSPSIFVSF*SWGRWMSLAHL Trigger: CAAGTGGGCCAGACTCATCCATCTCCCCCAACTCAAAAATGAAACAAAGATGGAGGGAGAACGGAATTGGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000455725.6 |
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