Pregenerated sensors for ALYREF (Homo sapiens)
Ensembl gene IDs: ENSG00000183684Ensembl transcript IDs: ENST00000504015.2, ENST00000505490.3, ENST00000511412.1, ENST00000512673.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGTCGGGAAGTTGTTTTGGCCTGCTGTAGGGCGCCGGTCGGTTCCTaGCGCCTCCGCCGGCCGCGCCGCGGGCGATGGCCGGCCGGTTCC | + |
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Preference number: 5 (lower is better) Translates to: CREVVLACCRAPVGS*RLRRPRRGRWPAGS Trigger: GGAACCGGCCGGCCATCGCCCGCGGCGCGGCCGGCGGAGGCGGCAGGAACCGACCGGCGCCCTACAGCAGGCCAAAACAACTTCCCGACA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000505490.3 ENST00000512673.1 |
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| CDS TCA 90 bp | TTTCCTGACCCTCACGGCTACTCCGGACCCTTCCTCTTCCCGGCCTaGGAGGATCCGGCCGAAACGGGGCCGCCAGCGCTCCCTCCGGCG | + |
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Preference number: 5 (lower is better) Translates to: FPDPHGYSGPFLFPA*EDPAETGPPALPPA Trigger: CGCCGGAGGGAGCGCTGGCGGCCCCGTTTCGGCCGGATCCTCTCAGGCCGGGAAGAGGAAGGGTCCGGAGTAGCCGTGAGGGTCAGGAAA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000511412.1 |
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| CDS TCA 90 bp | CACTCAGAGGTGTACTATGGCGGTTCTGAGAAGGCTTCACAGAAGTaGATCTTCCGGAAGGAGCTGAAGGAGGGGAGGGATGTAGCTTGC | + |
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Preference number: 5 (lower is better) Translates to: HSEVYYGGSEKASQK*IFRKELKEGRDVAC Trigger: GCAAGCTACATCCCTCCCCTCCTTCAGCTCCTTCCGGAAGATTCACTTCTGTGAAGCCTTCTCAGAACCGCCATAGTACACCTCTGAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512673.1 |
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| CDS TCA 90 bp | CTTTACGACTACAGCCCCGCACTCAGAGGTGTACTATGGCGGTTCTaGGAAGGCTTCACAGAAGTGAATCTTCCGGAAGGAGCTGAAGGA | + |
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Preference number: 5 (lower is better) Translates to: LYDYSPALRGVLWRF*EGFTEVNLPEGAEG Trigger: TCCTTCAGCTCCTTCCGGAAGATTCACTTCTGTGAAGCCTTCTCAGAACCGCCATAGTACACCTCTGAGTGCGGGGCTGTAGTCGTAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504015.2 |
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| CDS GCA 72 bp | GTTGTTTTGGCCTGCTGTAGGGCGCCGGTCGGTTCCTaGCGCCTCCGCCGGCCGCGCCGCGGGCGATGGCCG | + |
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Preference number: 6 (lower is better) Translates to: VVLACCRAPVGS*RLRRPRRGRWP Trigger: CGGCCATCGCCCGCGGCGCGGCCGGCGGAGGCGGCAGGAACCGACCGGCGCCCTACAGCAGGCCAAAACAAC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000505490.3 ENST00000512673.1 |
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| CDS TCA 72 bp | CCTCACGGCTACTCCGGACCCTTCCTCTTCCCGGCCTaGGAGGATCCGGCCGAAACGGGGCCGCCAGCGCTC | + |
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Preference number: 6 (lower is better) Translates to: PHGYSGPFLFPA*EDPAETGPPAL Trigger: GAGCGCTGGCGGCCCCGTTTCGGCCGGATCCTCTCAGGCCGGGAAGAGGAAGGGTCCGGAGTAGCCGTGAGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000511412.1 |
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| CDS GCA 72 bp | CGGCACCTCTGCCTCTTCCACGGGCGCCTCCGCGGGTaGCTCTCCGGGTGCCTCCACCACCACCAAAACCTC | + |
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Preference number: 6 (lower is better) Translates to: RHLCLFHGRLRG*LSGCLHHHQNL Trigger: GAGGTTTTGGTGGTGGTGGAGGCACCCGGAGAGGCACCCGCGGAGGCGCCCGTGGAAGAGGCAGAGGTGCCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505490.3 |
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| CDS CCA 72 bp | CAGGCAGGCTGGGAGTTGGAGAGGGAACCCAGAGTGTaGGGATACTCCGGCCGCAGGCACACAGCGGGAACT | + |
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Preference number: 6 (lower is better) Translates to: QAGWELEREPRV*GYSGRRHTAGT Trigger: AGTTCCCGCTGTGTGCCTGCGGCCGGAGTATCCCCACACTCTGGGTTCCCTCTCCAACTCCCAGCCTGCCTG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511412.1 |
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| CDS GCA 72 bp | CCGGCACCACCGCCGAAGCCACTGTCGAAAAGATCGTaGTGCCACTTGTCGGGAAGTTGTTTTGGCCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: PAPPPKPLSKRS*CHLSGSCFGLL Trigger: CAGCAGGCCAAAACAACTTCCCGACAAGTGGCAGCACGATCTTTTCGACAGTGGCTTCGGCGGTGGTGCCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000505490.3 ENST00000512673.1 |
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| CDS CAA 72 bp | TTCAGTTTAATGATGTCGTCCAGAGACATGTCCATTTaGTCGGCCATGGCGGGCGCGGAATCGGGCATCGGC | + |
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Preference number: 6 (lower is better) Translates to: FSLMMSSRDMSI*SAMAGAESGIG Trigger: GCCGATGCCCGATTCCGCGCCCGCCATGGCCGACAAAATGGACATGTCTCTGGACGACATCATTAAACTGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000505490.3 |
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| CDS TCA 72 bp | GTGTACTATGGCGGTTCTGAGAAGGCTTCACAGAAGTaGATCTTCCGGAAGGAGCTGAAGGAGGGGAGGGAT | + |
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Preference number: 6 (lower is better) Translates to: VYYGGSEKASQK*IFRKELKEGRD Trigger: ATCCCTCCCCTCCTTCAGCTCCTTCCGGAAGATTCACTTCTGTGAAGCCTTCTCAGAACCGCCATAGTACAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000504015.2 ENST00000512673.1 |
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