RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ABITRAM (Homo sapiens)

Ensembl gene IDs: ENSG00000119328

Ensembl transcript IDs: ENST00000322940.11, ENST00000374624.7, ENST00000466200.1

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AAAGTCACCAGAAAGACTGAAAAGATGAGCATCCACCTCCTTTTATaGGATGGGATAGGTGAGGCAGCAGACAGAAGTGAGGGATCCTGT +
Preference number: 1 (lower is better)
Translates to: KVTRKTEKMSIHLLL*DGIGEAADRSEGSC
Trigger: ACAGGATCCCTCACTTCTGTCTGCTGCCTCACCTATCCCATCCCATAAAAGGAGGTGGATGCTCATCTTTTCAGTCTTTCTGGTGACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374624.7
3UTR CCA 72 bp AGAAAGACTGAAAAGATGAGCATCCACCTCCTTTTATaGGATGGGATAGGTGAGGCAGCAGACAGAAGTGAG +
Preference number: 3 (lower is better)
Translates to: RKTEKMSIHLLL*DGIGEAADRSE
Trigger: CTCACTTCTGTCTGCTGCCTCACCTATCCCATCCCATAAAAGGAGGTGGATGCTCATCTTTTCAGTCTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374624.7
3UTR TCA 72 bp GTGTTCAATTTATTTTTGCAAAGTCACCAGAAAGACTaGAAAGATGAGCATCCACCTCCTTTTATGGGATGG +
Preference number: 3 (lower is better)
Translates to: VFNLFLQSHQKD*KDEHPPPFMGW
Trigger: CCATCCCATAAAAGGAGGTGGATGCTCATCTTTTCAGTCTTTCTGGTGACTTTGCAAAAATAAATTGAACAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000374624.7
3UTR CCA 72 bp CCTTTGGAACCTGAGTATATGAACCTGCTCTATAAGTaGGTTTCGTGTTTGGTTAATGATATATTTTTGACT +
Preference number: 3 (lower is better)
Translates to: PLEPEYMNLLYK*VSCLVNDIFLT
Trigger: AGTCAAAAATATATCATTAACCAAACACGAAACCCACTTATAGAGCAGGTTCATATACTCAGGTTCCAAAGG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000322940.11
3UTR GCA 72 bp TATATTTTTGACTCGTTTATAGTTGAAAATAGTCCATaGATAAGTGGACCCTTGCAGTTCAAACCTATGTTG +
Preference number: 3 (lower is better)
Translates to: YIFDSFIVENSP*ISGPLQFKPML
Trigger: CAACATAGGTTTGAACTGCAAGGGTCCACTTATGCATGGACTATTTTCAACTATAAACGAGTCAAAAATATA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000322940.11
CDS-3UTR TCA 90 bp GGTGAGGCAGCAGACAGAAGTGAGGGATCCTGTGCTCGTGAAGATTCCTTCCTAAGTCACCAGAAAGACTaGAAAGATGAGCATCCACCT +
Preference number: 4 (lower is better)
Translates to: GEAADRSEGSCAREDSFLSHQKD*KDEHPP
Trigger: AGGTGGATGCTCATCTTTTCAGTCTTTCTGGTGACT...TAGGAAGGAATCTTCACGAGCACAGGATCCCTCACTTCTGTCTGCTGCCTCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374624.7
3UTR CAA 72 bp TCCATACGTGAGAACTCAAGTCCTGCAGTTGGCCCTTaGGAACCTGAGTATATGAACCTGCTCTATAAGTGG +
Preference number: 4 (lower is better)
Translates to: SIRENSSPAVGP*EPEYMNLLYKW
Trigger: CCACTTATAGAGCAGGTTCATATACTCAGGTTCCAAAGGGCCAACTGCAGGACTTGAGTTCTCACGTATGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000322940.11
CDS-3UTR TCA 90 bp AGGCAGCAGACAGAAGTGAGGGATCCTGTGCTCGTGAAGATTCCTTCCTATAGAGAAAGACTGAAAAGATaGGCATCCACCTCCTTTTAT +
Preference number: 4 (lower is better)
Translates to: RQQTEVRDPVLVKIPSYRERLKR*ASTSFY
Trigger: ATAAAAGGAGGTGGATGCTCATCTTTTCAGTCTTTC...TCTATAGGAAGGAATCTTCACGAGCACAGGATCCCTCACTTCTGTCTGCTGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374624.7
CDS-3UTR CCA 90 bp TCAATTTATTTTTGCAAAGTCACCAGAAAGACTGAAAAGATGAGCATCCACCTCATCCACCTCCTTTTATaGGATGGGATAGGTGAGGCA +
Preference number: 4 (lower is better)
Translates to: SIYFCKVTRKTEKMSIHLIHLLL*DGIGEA
Trigger: TGCCTCACCTATCCCATCCCATAAAAGGAGGTGGAT...GAGGTGGATGCTCATCTTTTCAGTCTTTCTGGTGACTTTGCAAAAATAAATTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000374624.7
3UTR CAA 72 bp TTTATAGTTGAAAATAGTCCATGCATAAGTGGACCCTaGCAGTTCAAACCTATGTTGCTCAAGGGTCAAATG +
Preference number: 4 (lower is better)
Translates to: FIVENSPCISGP*QFKPMLLKGQM
Trigger: CATTTGACCCTTGAGCAACATAGGTTTGAACTGCAAGGGTCCACTTATGCATGGACTATTTTCAACTATAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000322940.11
CDS-3UTR CAA 90 bp ATAGGTGAGGCAGCAGACAGAAGTGAGGGATCCTGTGCTCGTGAAGATTCCTTCTCACAAAATTTTCCTTaGACATCCGGTTTGTACCAG +
Preference number: 5 (lower is better)
Translates to: IGEAADRSEGSCAREDSFSQNFP*TSGLYQ
Trigger: CTGGTACAAACCGGATGTCAAAGGAAAATTTTGTGA...GAAGGAATCTTCACGAGCACAGGATCCCTCACTTCTGTCTGCTGCCTCACCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374624.7
CDS TCA 90 bp CCACTTCAAGTAGCAGCTGATGATGTGGTCCTCCATTTGGATGTTTaGGTAATCAAATTTATATGTTCAGAGTGGCCAGGCACTGGAATA +
Preference number: 5 (lower is better)
Translates to: PLQVAADDVVLHLDV*VIKFICSEWPGTGI
Trigger: TATTCCAGTGCCTGGCCACTCTGAACATATAAATTTGATTACTCAAACATCCAAATGGAGGACCACATCATCAGCTGCTACTTGAAGTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000466200.1